Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004820

Physical Location & Seq

Genomic Coordinates Forward (+)

31581054 .. 31600833

Gene Structure 19780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG322400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3312 bp

ATGGAGATCGACCCCCCGCCTTTCAGAGAAAGCACCGCCACGACCGAGGACTGGCGGAAGGCGCTTGCCAAGGTCGTCCCCGCCGTCGTCGTTTTGAGGACCACGGCGTGTCGTGCCTTCGATACTGAAGCCGCCGGTGCTAGCTATGCCACCGGCTTTGTCATCGATAAGCGCCGCGGGATCATCCTCACCAACCGCCATGTTGTCAAGCCTGGACCTGTGGTTGCGGAAGCTATGTTTGTGAATCGCGAAGAAGTTCCAGTATATCCTATCTATAGGGATCCGGTTCATGATTTTGGCTTCTTTTGTTATGATCCTGGTGCAATACAGTTTCTGAAGTATGAAGAGATTCCTCTTGCCCCTGAGGCTGCTTCTGTTGGATTAGAAATCAGGGTTGTTGGTAACGATAGTGGTGAGAAGGTCTCCATTTTGGCTGGTACTCTTGCTCGTTTAGATAGAGATGCTCCTTATTACAAAAAGGATGGCTATAATGATTTCAATACATTCTACATGCAAGCTGCATCTGGTACCAAAGGTGGGTCTAGTGGCTCTCCGGTGATTGATTGGCTAGGTAGGGCGGTGGCTTTGAATGCTGGTAGCAAGTCATCAAGTGCATCAGCATTTTTTTTACCATTGGAACGAGTTGTGAGGGCATTGAAGTTTCTCCAAAATGGCAGAGATTCTTTTGTCAAAAAATGGGAGGCAGTTTCTATACTGCGTGGTACGCTTCAGGTAACTTTTGTCCACAAAGGATTTGATGAGACACGGCGACTTGGTCTTCGAAGTGAGACGGAGCAGAGGGTTCGACATGAGTCTTCGCAGGGTGAAACTGGAATGCTTGTTGTTGAATCTGTGGTGCCAGGCGGTCCAGCTCATAAGTGTTTGGAGCCAGGTGATGTTCTTGTTTGCATGAATGGGGAAGTAATTACCCAATTTCTAAAAATGGAGACATTACTTGATGATAGTGTGAATCAAAAAATTGAAATACAGATCGAAAGGGGTGGCACACCATTAACTGTGAACTTGCTGGTGCAGGATTTGCACTCAATAACCCCTAATTACTTCTTAGAAGTAAGTGGTGCAGTGATACACCCTCTCTCGTATCAACAGGCTAGAAATTTTCGCTTCCAGTGTGGCCTTGTGTATGTGGCAGAGCCAGGATATATGCTCTTTAGAGCTGGAGTTCCTCGTCATGCTATCATTAAGAAGTTTGCTGGTCAGGAAATATCACTACTTGAGGATCTAATTTCAGTGCTATGCAAGCTATCTCGGGGTGCTCGAGTGCCGTTAGAGTATATAAGCTATGCAGATCGTCATCGGAGGAAGTCAGTCCTGGTCACCGTTGATCGCCATGAATGGTATGCCCCTCCACAGATATACACTCGTGATGATAGTACTGGTCTTTGGACTGTGAAGCCTGCTTTTCAGCCTGATGCTGGTCTATTTTCATCTGGTATCAATGATCTTGGTGGTATAAGAAGTGATGCAGTTCCTCTATGTACTGAGGCCTCTTCTGTTGGGCACATGCATCATAATAGCCATGCAGAATTGAATGAAGGGGTCACCAGTATGGAAACCAGTTATGAACATTCTTCTGAAGGAGGACATCCTCGGGCTGAATCTGATGTTGAAACAAAGAAACACCGAGTGAAGGAGGATTTTTCTTCTGATGGAAATGTCGTAGCCGACAGTTCCTTTCTTGAAACAGATGAAGGTGATCCGGAGGATGCAAATACTGTGGAGAATTCTGTTATGAGAGATCTTCAAGGTGAAAATGTAGCAGCAGCTAATTCTTCACTAGCTGAACGTATTATCGAGCCAACTCTTGTTATGCTTGAGGTTCATGTGCCACCATCATGTATGCTCGATGGTGTACATTCACAACATTTTTTTGGGACTGGTGTTATTATATACCACTCTCAAAATATGGGACTGATTGCTGTTGACAAGAATACAGTTGCGGTATCTGCATCTGATGTGATGCTTTCATTCGCCGCATTTCCAATTGAAATTCCAGGGGAGGTGGTTTTTCTCCATCCCGTTCACAATTATGCTCTCATTTCATATGATCCATTGGCCCTGGGCGCTGTTGGTATCTCGCTTGTTCGTGCTGCGAAACTACTTCCTGAGCCTGCAATACGTCGTGGGGATTCTGTGCATCTTGTTGGGCTAAGTAGAAGCCTACAAGCAACATCTAGAAAGTCTATTGTGACCAACCCATGCGCTGCAGTAAATATTAGCTCTGCTGATTGTCCACGTTACAGAGCAACTAATATGGAAGTGATCGAGCTTGATACTGATTTTGGCAGTACATTCTCTGGAGTGCTAACTGATGAGCATGGAAGGGTCCGAGCTATTTGGGGTAGCTTTTCAACTCAGGTGCATACTTTTCTCCTCGGCAAAAAAAAGAAAAAGAGAAGTAAGAAAAAATTCAGTAGCTCCGAAGATCATCAATTTGTAAGAGGTATCCCAATATATACAATCAGTCAAGTCCTTGAACAAATCATATGTGGTGCTCAAGGCCCTCCTCTTCTCATAAATTGTGTCAAAAGGCTGATGCCTCTAGTTAGAATTTTGGAGGTTGAACTATATCCTACACTGCTTTCAAAAGCCCGCAGTTTTGGACTGAGTGATGATTGGGTCCAAGCACTTGTCAAGAAAGATCCGATTAGACGACAGGTTTTACGTGTGAAAGGATGTTTAGCTGGATCTAAAGCCGAAAATCTGTTAGAACAAGGAGACATGGTCTTGGCAATCAATAAGGAACCAGTTACATGCTTCCGTGATGTAGAAAATGCCTGTCAAGAATTGGGAAAACATGAAAACAAAGATGGAAAGCTTAACATGACCATATTCCGTCAGGGGCGTGAGATTGATCTTCTCGTCGAAACAGATATTAGAGATGGGAGTGGTACTACACGTGTAATAAATTGGTGTGGATGTATTGTTCAGGATCCCCATCCTGCAGTGCGTGCTCTTGGATTTCTTCCAGAAGAAGGTCATGGTGTTTATGTGGCAAGGTGGTGTCATGGTAGCCCGGCGCATAGATATGGACTGTATGCTCTTCAGTGGATTGTTGAAGTTAATGGAAAACAGATTCCTGATTTAGATGTTTTTTTGAATGTCACAAAGGAAATAGAACATGGAGAGTTTGTTCGTGTACGGACCATCCACCTAAATGGAAAACCTAAAGTTTTAACGTTGAAGCAGGACTTGCACTACTGGCCTACATGGGAGGTCAGATTTGATCCTGATTCTGCTTTATGGCGTCGAAACACAATTAAGGCACTAGACTATAGTTCTAATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0010109 GO:0010205 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0042548 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_1 PDZ_2 Trypsin_2

Protein Analysis

1103

Amino Acids

122.11

Weight (kDa)

6.28

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin_2	PF13365	50 - 196	1.2e-20	Trypsin-like peptidase domain
PDZ_2	PF13180	273 - 343	4.3e-06	PDZ domain
PDZ_6	PF17820	281 - 333	2.1e-07	PDZ domain
PDZ_1	PF12812	349 - 422	1.4e-14	PDZ-like domain
PDZ_1	PF12812	972 - 1047	8.8e-07	PDZ-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03380 AT3G03380
fragaria_vesca	FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890
malus_domestica	MD17G1256700.v1.1
prunus_persica	Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1
pyrus_communis	pycom17g25890
rosa_chinensis	RchiOBHm_Chr7g0220101
rosa_laevigata	RLG00000002258
rosa_multiflora	Rmu_sc0007553.1_g000006 Rmu_sc0018981.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239790
rosa_rugosa	Rorug07G0188800 Rorug07G0188900 Rorug07G0188900 Rorug07G0189000
rosa_samantha	Rh7AG332500 Rh7BG322400 Rh7CG350000 Rh7DG328200
rosa_wichuraiana	Rw7G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	527
AccB1I	GGYRCC	2 cut(s)	527, 856
AccII	CGCG	2 cut(s)	177, 249
AccIII	TCCGGA	1 cut(s)	1720
AclI	AACGTT	1 cut(s)	3200
AcsI	RAATTY	5 cut(s)	1117, 1744, 2010, 2429, 2571
AcuI	CTGAAG	5 cut(s)	147, 356, 713, 1617, 3050
AcvI	CACGTG	1 cut(s)	2921
AcyI	GRCGYC	1 cut(s)	3268
AdeI	CACNNNGTG	2 cut(s)	108, 1648
AfaI	GTAC	9 cut(s)	439, 529, 724, 1396, 1501, 1875, 2311, 2914, 3162
AfiI	CCNNNNNNNGG	5 cut(s)	51, 537, 1436, 1651, 2996
AflIII	ACRYGT	3 cut(s)	2686, 2918, 2920
AjnI	CCWGG	8 cut(s)	211, 316, 859, 889, 1156, 1332, 2014, 2079
AloI	GAACNNNNNNTCC	4 cut(s)	2931, 2963, 3138, 3170
Alw21I	GWGCWC	3 cut(s)	1279, 2518, 2977
Alw26I	GTCTC	5 cut(s)	427, 755, 782, 941, 2733
AlwNI	CAGNNNCTG	1 cut(s)	334
Ama87I	CYCGRG	3 cut(s)	1269, 1278, 1611
Aor13HI	TCCGGA	1 cut(s)	1720
AoxI	GGCC	5 cut(s)	1135, 1506, 2076, 2521, 3224
ApeKI	GCWGC	6 cut(s)	368, 518, 1781, 1784, 2111, 2225
ApoI	RAATTY	5 cut(s)	1117, 1744, 2010, 2429, 2571
ArsI	GACNNNNNNTTYG	2 cut(s)	762, 794
Asp700I	GAANNNNTTC	3 cut(s)	255, 348, 2429
Asp718I	GGTACC	1 cut(s)	527
AspLEI	GCGC	5 cut(s)	64, 174, 2087, 2225, 3043
AspS9I	GGNCC	8 cut(s)	99, 215, 866, 2077, 2347, 2522, 2641, 3165
AsuC2I	CCSGG	1 cut(s)	3038
AsuHPI	GGTGA	9 cut(s)	181, 425, 568, 836, 905, 1330, 1555, 1727, 1781
AsuII	TTCGAA	1 cut(s)	781
AsuNHI	GCTAGC	1 cut(s)	140
AvaI	CYCGRG	3 cut(s)	1269, 1278, 1611
AvaII	GGWCC	6 cut(s)	99, 215, 866, 2347, 2641, 3165
AxyI	CCTNAGG	1 cut(s)	363
BaeGI	GKGCMC	1 cut(s)	1524
BamHI	GGATCC	2 cut(s)	280, 2953
BanI	GGYRCC	2 cut(s)	527, 856
BauI	CACGAG	1 cut(s)	1383
BbrPI	CACGTG	1 cut(s)	2921
BbsI	GAAGAC	2 cut(s)	770, 807
Bbv12I	GWGCWC	3 cut(s)	1279, 2518, 2977
BbvI	GCAGC	6 cut(s)	355, 505, 1793, 1796, 2098, 2212
BccI	CCATC	9 cut(s)	476, 1664, 1861, 1862, 2043, 2825, 2897, 2967, 3176
BceAI	ACGGC	4 cut(s)	68, 120, 782, 1270
BcgI	CGANNNNNNTGC	2 cut(s)	785, 819
BciT130I	CCWGG	8 cut(s)	213, 318, 861, 891, 1158, 1334, 2016, 2081
BciVI	GTATCC	1 cut(s)	2477
BcnI	CCSGG	1 cut(s)	3038
BcoDI	GTCTC	5 cut(s)	427, 755, 782, 941, 2733
BfaI	CTAG	8 cut(s)	141, 543, 569, 1113, 1799, 2196, 2564, 3290
BfmI	CTRYAG	4 cut(s)	274, 2226, 2964, 3295
BfoI	RGCGCY	3 cut(s)	65, 175, 2088
BfuI	GTATCC	1 cut(s)	2477
BglI	GCCNNNNNGGC	1 cut(s)	365
BglII	AGATCT	1 cut(s)	1759
BisI	GCNGC	9 cut(s)	132, 175, 369, 519, 1782, 1785, 1995, 2112, 2226
BlsI	GCNGC	9 cut(s)	133, 176, 370, 520, 1783, 1786, 1996, 2113, 2227
BmcAI	AGTACT	1 cut(s)	1396
Bme1390I	CCNGG	9 cut(s)	213, 318, 861, 891, 1158, 1334, 2016, 2081, 3038
Bme18I	GGWCC	6 cut(s)	99, 215, 866, 2347, 2641, 3165
BmeT110I	CYCGRG	3 cut(s)	1269, 1278, 1611
BmgT120I	GGNCC	8 cut(s)	99, 215, 866, 2077, 2347, 2522, 2641, 3165
BmiI	GGNNCC	8 cut(s)	282, 529, 858, 888, 2348, 2642, 2766, 2955
BmrFI	CCNGG	9 cut(s)	213, 318, 861, 891, 1158, 1334, 2016, 2081, 3038
BmtI	GCTAGC	1 cut(s)	144
BoxI	GACNNNNGTC	1 cut(s)	811
BpiI	GAAGAC	2 cut(s)	770, 807
BplI	GAGNNNNNCTC	2 cut(s)	407, 439
BpmI	CTGGAG	2 cut(s)	1200, 2340
Bpu10I	CCTNAGC	1 cut(s)	2127
Bpu14I	TTCGAA	1 cut(s)	781
BpuEI	CTTGAG	3 cut(s)	1256, 1856, 2502
BpuMI	CCSGG	1 cut(s)	3038
Bsa29I	ATCGAT	1 cut(s)	165
BsaAI	YACGTR	2 cut(s)	2687, 2921
BsaBI	GATNNNNATC	2 cut(s)	1314, 2958
BsaHI	GRCGYC	1 cut(s)	3268
BsaI	GGTCTC	1 cut(s)	427
BsaJI	CCNNGG	9 cut(s)	45, 69, 102, 175, 1610, 2015, 2079, 2080, 2395
BsaWI	WCCGGW	3 cut(s)	283, 553, 1720
BsaXI	ACNNNNNCTCC	4 cut(s)	2730, 2760, 3138, 3168
Bsc4I	CCNNNNNNNGG	5 cut(s)	51, 537, 1436, 1651, 2996
Bse118I	RCCGGY	2 cut(s)	134, 152
Bse21I	CCTNAGG	1 cut(s)	363
Bse8I	GATNNNNATC	2 cut(s)	1314, 2958
BseAI	TCCGGA	1 cut(s)	1720
BseBI	CCWGG	8 cut(s)	213, 318, 861, 891, 1158, 1334, 2016, 2081
BseCI	ATCGAT	1 cut(s)	165
BseDI	CCNNGG	9 cut(s)	45, 69, 102, 175, 1610, 2015, 2079, 2080, 2395
BseGI	GGATG	9 cut(s)	183, 487, 1606, 1732, 2035, 2702, 2945, 2959, 3168
BseJI	GATNNNNATC	2 cut(s)	1314, 2958
BseLI	CCNNNNNNNGG	5 cut(s)	51, 537, 1436, 1651, 2996
BseMII	CTCAG	5 cut(s)	354, 1494, 2118, 2390, 2618
BseRI	GAGGAG	2 cut(s)	2384, 2517
BseSI	GKGCMC	1 cut(s)	1524
BseXI	GCAGC	6 cut(s)	355, 505, 1793, 1796, 2098, 2212
BsgI	GTGCAG	2 cut(s)	1052, 1101
Bsh1236I	CGCG	2 cut(s)	177, 249
Bsh1285I	CGRYCG	1 cut(s)	45
BshFI	GGCC	5 cut(s)	1137, 1508, 2078, 2523, 3226
BshNI	GGYRCC	2 cut(s)	527, 856
BshVI	ATCGAT	1 cut(s)	165
BsiEI	CGRYCG	1 cut(s)	45
BsiHKAI	GWGCWC	3 cut(s)	1279, 2518, 2977
BsiHKCI	CYCGRG	3 cut(s)	1269, 1278, 1611
BsiSI	CCGG	6 cut(s)	135, 153, 284, 554, 1721, 3038
BslFI	GGGAC	3 cut(s)	62, 1909, 1944
BslI	CCNNNNNNNGG	5 cut(s)	51, 537, 1436, 1651, 2996
BsmAI	GTCTC	5 cut(s)	427, 755, 782, 941, 2733
BsmBI	CGTCTC	1 cut(s)	782
BsmFI	GGGAC	3 cut(s)	62, 1909, 1944
BsmI	GAATGC	2 cut(s)	595, 840
BsnI	GGCC	5 cut(s)	1137, 1508, 2078, 2523, 3226
Bso31I	GGTCTC	1 cut(s)	427
BsoBI	CYCGRG	3 cut(s)	1269, 1278, 1611
Bsp119I	TTCGAA	1 cut(s)	781
Bsp1286I	GDGCHC	4 cut(s)	1279, 1524, 2518, 2977
Bsp13I	TCCGGA	1 cut(s)	1720
Bsp1407I	TGTACA	1 cut(s)	1873
Bsp68I	TCGCGA	1 cut(s)	249
BspANI	GGCC	5 cut(s)	1137, 1508, 2078, 2523, 3226
BspCNI	CTCAG	5 cut(s)	355, 1495, 2119, 2389, 2619
BspDI	ATCGAT	1 cut(s)	165
BspEI	TCCGGA	1 cut(s)	1720
BspFNI	CGCG	2 cut(s)	177, 249
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	8 cut(s)	282, 529, 858, 888, 2348, 2642, 2766, 2955
BspMAI	CTGCAG	2 cut(s)	2230, 2968
BspOI	GCTAGC	1 cut(s)	144
BspQI	GCTCTTC	1 cut(s)	3069
BspT104I	TTCGAA	1 cut(s)	781
BspT107I	GGYRCC	2 cut(s)	527, 856
BspTNI	GGTCTC	1 cut(s)	427
BsrFI	RCCGGY	2 cut(s)	134, 152
BsrGI	TGTACA	1 cut(s)	1873
BssAI	RCCGGY	2 cut(s)	134, 152
BssECI	CCNNGG	9 cut(s)	45, 69, 102, 175, 1610, 2015, 2079, 2080, 2395
BssNI	GRCGYC	1 cut(s)	3268
BssSI	CACGAG	1 cut(s)	1383
BssT1I	CCWWGG	1 cut(s)	69
Bst2BI	CACGAG	1 cut(s)	1383
Bst2UI	CCWGG	8 cut(s)	213, 318, 861, 891, 1158, 1334, 2016, 2081
Bst4CI	ACNGT	8 cut(s)	330, 1018, 1342, 1411, 1691, 1738, 1957, 3057
Bst6I	CTCTTC	4 cut(s)	339, 1516, 2535, 3069
BstACI	GRCGYC	1 cut(s)	3268
BstAPI	GCANNNNNTGC	3 cut(s)	1039, 2972, 3214
BstAUI	TGTACA	1 cut(s)	1873
BstBAI	YACGTR	2 cut(s)	2687, 2921
BstBI	TTCGAA	1 cut(s)	781
BstC8I	GCNNGC	8 cut(s)	66, 142, 516, 1262, 1419, 2133, 2614, 2973
BstDEI	CTNAG	7 cut(s)	363, 1066, 1503, 2127, 2171, 2376, 2627
BstDSI	CCRYGG	2 cut(s)	102, 175
BstEII	GGTNACC	2 cut(s)	1336, 1561
BstF5I	GGATG	9 cut(s)	183, 487, 1606, 1732, 2035, 2702, 2945, 2959, 3168
BstFNI	CGCG	2 cut(s)	177, 249
BstH2I	RGCGCY	3 cut(s)	65, 175, 2088
BstHHI	GCGC	5 cut(s)	64, 174, 2087, 2225, 3043
BstMAI	GTCTC	5 cut(s)	427, 755, 782, 941, 2733
BstMCI	CGRYCG	1 cut(s)	45
BstNI	CCWGG	8 cut(s)	213, 318, 861, 891, 1158, 1334, 2016, 2081
BstNSI	RCATGY	3 cut(s)	514, 1528, 2778
BstPAI	GACNNNNGTC	1 cut(s)	811
BstPI	GGTNACC	2 cut(s)	1336, 1561
BstSCI	CCNGG	9 cut(s)	211, 316, 859, 889, 1156, 1332, 2014, 2079, 3036
BstSFI	CTRYAG	4 cut(s)	274, 2226, 2964, 3295
BstSLI	GKGCMC	1 cut(s)	1524
BstUI	CGCG	2 cut(s)	177, 249
BstV1I	GCAGC	6 cut(s)	355, 505, 1793, 1796, 2098, 2212
BstV2I	GAAGAC	2 cut(s)	770, 807
BstX2I	RGATCY	6 cut(s)	280, 1240, 1759, 2662, 2708, 2953
BstXI	CCANNNNNNTGG	1 cut(s)	3179
BstYI	RGATCY	6 cut(s)	280, 1240, 1759, 2662, 2708, 2953
Bsu15I	ATCGAT	1 cut(s)	165
Bsu36I	CCTNAGG	1 cut(s)	363
BsuI	GTATCC	1 cut(s)	2477
BsuRI	GGCC	5 cut(s)	1137, 1508, 2078, 2523, 3226
BsuTUI	ATCGAT	1 cut(s)	165
BtgI	CCRYGG	2 cut(s)	102, 175
BtsCI	GGATG	9 cut(s)	183, 487, 1606, 1732, 2035, 2702, 2945, 2959, 3168
BtsI	GCAGTG	3 cut(s)	1089, 2597, 2973
BtsIMutI	CAGTG	6 cut(s)	1089, 1136, 1257, 2597, 2973, 3074
BtuMI	TCGCGA	1 cut(s)	249
Cac8I	GCNNGC	8 cut(s)	66, 142, 516, 1262, 1419, 2133, 2614, 2973
CaiI	CAGNNNCTG	1 cut(s)	334
CciI	TCATGA	1 cut(s)	289
CfoI	GCGC	5 cut(s)	64, 174, 2087, 2225, 3043
Cfr10I	RCCGGY	2 cut(s)	134, 152
Cfr13I	GGNCC	8 cut(s)	99, 215, 866, 2077, 2347, 2522, 2641, 3165
Cfr42I	CCGCGG	1 cut(s)	178
ClaI	ATCGAT	1 cut(s)	165
CseI	GACGC	1 cut(s)	3257
Csp6I	GTAC	9 cut(s)	438, 528, 723, 1395, 1500, 1874, 2310, 2913, 3161
CspCI	CAANNNNNGTGG	4 cut(s)	139, 174, 1719, 1754
CviQI	GTAC	9 cut(s)	438, 528, 723, 1395, 1500, 1874, 2310, 2913, 3161
DdeI	CTNAG	7 cut(s)	363, 1066, 1503, 2127, 2171, 2376, 2627
DraIII	CACNNNGTG	2 cut(s)	108, 1648
Eam1104I	CTCTTC	4 cut(s)	339, 1516, 2535, 3069
EarI	CTCTTC	4 cut(s)	339, 1516, 2535, 3069
EciI	GGCGGA	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	69
Eco147I	AGGCCT	1 cut(s)	1508
Eco31I	GGTCTC	1 cut(s)	427
Eco47I	GGWCC	6 cut(s)	99, 215, 866, 2347, 2641, 3165
Eco57I	CTGAAG	5 cut(s)	147, 356, 713, 1617, 3050
Eco72I	CACGTG	1 cut(s)	2921
Eco81I	CCTNAGG	1 cut(s)	363
Eco88I	CYCGRG	3 cut(s)	1269, 1278, 1611
Eco91I	GGTNACC	2 cut(s)	1336, 1561
EcoO109I	RGGNCCY	1 cut(s)	2522
EcoO65I	GGTNACC	2 cut(s)	1336, 1561
EcoRI	GAATTC	1 cut(s)	1744
EcoRII	CCWGG	8 cut(s)	211, 316, 859, 889, 1156, 1332, 2014, 2079
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	1530
ErhI	CCWWGG	1 cut(s)	69
Esp3I	CGTCTC	1 cut(s)	782
FalI	AAGNNNNNCTT	2 cut(s)	3197, 3229
FaqI	GGGAC	3 cut(s)	62, 1909, 1944
FauI	CCCGC	4 cut(s)	24, 88, 170, 2621
FauNDI	CATATG	2 cut(s)	2065, 2507
Fnu4HI	GCNGC	9 cut(s)	132, 175, 369, 519, 1782, 1785, 1995, 2112, 2226
FokI	GGATG	9 cut(s)	170, 494, 1593, 1739, 2022, 2709, 2946, 2952, 3155
Fsp4HI	GCNGC	9 cut(s)	132, 175, 369, 519, 1782, 1785, 1995, 2112, 2226
FspBI	CTAG	8 cut(s)	141, 543, 569, 1113, 1799, 2196, 2564, 3290
GlaI	GCGC	5 cut(s)	63, 173, 2086, 2224, 3042
GluI	GCNGC	9 cut(s)	132, 175, 369, 519, 1782, 1785, 1995, 2112, 2226
GsuI	CTGGAG	2 cut(s)	1200, 2340
HaeII	RGCGCY	3 cut(s)	65, 175, 2088
HaeIII	GGCC	5 cut(s)	1137, 1508, 2078, 2523, 3226
HapII	CCGG	6 cut(s)	135, 153, 284, 554, 1721, 3038
HgaI	GACGC	1 cut(s)	3257
HhaI	GCGC	5 cut(s)	64, 174, 2087, 2225, 3043
Hin1I	GRCGYC	1 cut(s)	3268
Hin6I	GCGC	5 cut(s)	62, 172, 2085, 2223, 3041
HinP1I	GCGC	5 cut(s)	62, 172, 2085, 2223, 3041
HincII	GTYRAC	1 cut(s)	1945
HindII	GTYRAC	1 cut(s)	1945
HindIII	AAGCTT	1 cut(s)	2837
HpaII	CCGG	6 cut(s)	135, 153, 284, 554, 1721, 3038
HphI	GGTGA	9 cut(s)	181, 425, 568, 836, 905, 1330, 1555, 1727, 1781
Hpy166II	GTNNAC	7 cut(s)	745, 1021, 1874, 1945, 2044, 2255, 3161
Hpy8I	GTNNAC	7 cut(s)	745, 1021, 1874, 1945, 2044, 2255, 3161
Hpy99I	CGWCG	5 cut(s)	89, 92, 2145, 2888, 3273
HpyAV	CCTTC	9 cut(s)	52, 127, 412, 1550, 1592, 1645, 1706, 2337, 2990
HpyCH4III	ACNGT	8 cut(s)	330, 1018, 1342, 1411, 1691, 1738, 1957, 3057
HpyCH4IV	ACGT	6 cut(s)	1807, 2140, 2257, 2686, 2920, 3200
HpyF3I	CTNAG	7 cut(s)	363, 1066, 1503, 2127, 2171, 2376, 2627
HpySE526I	ACGT	6 cut(s)	1807, 2140, 2257, 2686, 2920, 3200
Hsp92I	GRCGYC	1 cut(s)	3268
HspAI	GCGC	5 cut(s)	62, 172, 2085, 2223, 3041
Kpn2I	TCCGGA	1 cut(s)	1720
KpnI	GGTACC	1 cut(s)	531
KspI	CCGCGG	1 cut(s)	178
LguI	GCTCTTC	1 cut(s)	3069
LmnI	GCTCC	4 cut(s)	469, 793, 886, 2444
Lsp1109I	GCAGC	6 cut(s)	355, 505, 1793, 1796, 2098, 2212
MaeI	CTAG	8 cut(s)	141, 543, 569, 1113, 1799, 2196, 2564, 3290
MaeII	ACGT	6 cut(s)	1807, 2140, 2257, 2686, 2920, 3200
MaeIII	GTNAC	8 cut(s)	401, 733, 1336, 1561, 2209, 2258, 2770, 3124
MfeI	CAATTG	1 cut(s)	2004
MflI	RGATCY	6 cut(s)	280, 1240, 1759, 2662, 2708, 2953
MhlI	GDGCHC	4 cut(s)	1279, 1524, 2518, 2977
MlyI	GAGTC	1 cut(s)	821
MmeI	TCCRAC	1 cut(s)	358
Mph1103I	ATGCAT	1 cut(s)	1530
MroI	TCCGGA	1 cut(s)	1720
MroXI	GAANNNNTTC	3 cut(s)	255, 348, 2429
MseI	TTAA	6 cut(s)	1013, 1203, 2841, 3084, 3197, 3282
MslI	CAYNNNNRTG	5 cut(s)	1568, 1855, 2049, 3048, 3177
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	6 cut(s)	135, 153, 284, 554, 1721, 3038
MspR9I	CCNGG	9 cut(s)	213, 318, 861, 891, 1158, 1334, 2016, 2081, 3038
MunI	CAATTG	1 cut(s)	2004
Mva1269I	GAATGC	2 cut(s)	595, 840
MvaI	CCWGG	8 cut(s)	213, 318, 861, 891, 1158, 1334, 2016, 2081
MvnI	CGCG	2 cut(s)	177, 249
NciI	CCSGG	1 cut(s)	3038
NdeI	CATATG	2 cut(s)	2065, 2507
NheI	GCTAGC	1 cut(s)	140
NlaIV	GGNNCC	8 cut(s)	282, 529, 858, 888, 2348, 2642, 2766, 2955
NmeAIII	GCCGAG	1 cut(s)	2376
NmuCI	GTSAC	4 cut(s)	1336, 1561, 2209, 3124
NruI	TCGCGA	1 cut(s)	249
NsiI	ATGCAT	1 cut(s)	1530
NspI	RCATGY	3 cut(s)	514, 1528, 2778
NspV	TTCGAA	1 cut(s)	781
PaeR7I	CTCGAG	1 cut(s)	1278
PagI	TCATGA	1 cut(s)	289
PasI	CCCWGGG	1 cut(s)	2080
PceI	AGGCCT	1 cut(s)	1508
PciSI	GCTCTTC	1 cut(s)	3069
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 1276
PctI	GAATGC	2 cut(s)	595, 840
PdmI	GAANNNNTTC	3 cut(s)	255, 348, 2429
PfeI	GAWTC	9 cut(s)	244, 349, 680, 848, 970, 1619, 2150, 3097, 3254
PflFI	GACNNNGTC	2 cut(s)	774, 2744
PkrI	GCNGC	9 cut(s)	133, 176, 370, 520, 1783, 1786, 1996, 2113, 2227
PleI	GAGTC	1 cut(s)	820
PmaCI	CACGTG	1 cut(s)	2921
PmlI	CACGTG	1 cut(s)	2921
PpsI	GAGTC	1 cut(s)	820
Ppu21I	YACGTR	2 cut(s)	2687, 2921
PshAI	GACNNNNGTC	1 cut(s)	811
Psp1406I	AACGTT	1 cut(s)	3200
Psp6I	CCWGG	8 cut(s)	211, 316, 859, 889, 1156, 1332, 2014, 2079
PspCI	CACGTG	1 cut(s)	2921
PspEI	GGTNACC	2 cut(s)	1336, 1561
PspGI	CCWGG	8 cut(s)	211, 316, 859, 889, 1156, 1332, 2014, 2079
PspN4I	GGNNCC	8 cut(s)	282, 529, 858, 888, 2348, 2642, 2766, 2955
PspPI	GGNCC	8 cut(s)	99, 215, 866, 2077, 2347, 2522, 2641, 3165
PspXI	VCTCGAGB	1 cut(s)	1278
PstI	CTGCAG	2 cut(s)	2230, 2968
PstNI	CAGNNNCTG	1 cut(s)	334
PsuI	RGATCY	6 cut(s)	280, 1240, 1759, 2662, 2708, 2953
PsyI	GACNNNGTC	2 cut(s)	774, 2744
RruI	TCGCGA	1 cut(s)	249
RsaI	GTAC	9 cut(s)	439, 529, 724, 1396, 1501, 1875, 2311, 2914, 3162
RsaNI	GTAC	9 cut(s)	438, 528, 723, 1395, 1500, 1874, 2310, 2913, 3161
RseI	CAYNNNNRTG	5 cut(s)	1568, 1855, 2049, 3048, 3177
SacII	CCGCGG	1 cut(s)	178
SapI	GCTCTTC	1 cut(s)	3069
SaqAI	TTAA	6 cut(s)	1013, 1203, 2841, 3084, 3197, 3282
SatI	GCNGC	9 cut(s)	132, 175, 369, 519, 1782, 1785, 1995, 2112, 2226
Sau96I	GGNCC	8 cut(s)	99, 215, 866, 2077, 2347, 2522, 2641, 3165
ScaI	AGTACT	1 cut(s)	1396
SchI	GAGTC	1 cut(s)	821
ScrFI	CCNGG	9 cut(s)	213, 318, 861, 891, 1158, 1334, 2016, 2081, 3038
SduI	GDGCHC	4 cut(s)	1279, 1524, 2518, 2977
SfcI	CTRYAG	4 cut(s)	274, 2226, 2964, 3295
Sfr274I	CTCGAG	1 cut(s)	1278
Sfr303I	CCGCGG	1 cut(s)	178
SfuI	TTCGAA	1 cut(s)	781
SgrAI	CRCCGGYG	1 cut(s)	134
SgrBI	CCGCGG	1 cut(s)	178
SinI	GGWCC	6 cut(s)	99, 215, 866, 2347, 2641, 3165
SlaI	CTCGAG	1 cut(s)	1278
SmiMI	CAYNNNNRTG	5 cut(s)	1568, 1855, 2049, 3048, 3177
SmlI	CTYRAG	4 cut(s)	1235, 1278, 1835, 2517
SmoI	CTYRAG	4 cut(s)	1235, 1278, 1835, 2517
SseBI	AGGCCT	1 cut(s)	1508
SspI	AATATT	1 cut(s)	2236
SspMI	CTAG	8 cut(s)	141, 543, 569, 1113, 1799, 2196, 2564, 3290
StuI	AGGCCT	1 cut(s)	1508
StyD4I	CCNGG	9 cut(s)	211, 316, 859, 889, 1156, 1332, 2014, 2079, 3036
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	8 cut(s)	330, 1018, 1342, 1411, 1691, 1738, 1957, 3057
TaiI	ACGT	6 cut(s)	1810, 2143, 2260, 2689, 2923, 3203
TaqII	GACCGA	1 cut(s)	59
TatI	WGTACW	4 cut(s)	1394, 1499, 1873, 2309
TauI	GCSGC	3 cut(s)	134, 177, 1997
TfiI	GAWTC	9 cut(s)	244, 349, 680, 848, 970, 1619, 2150, 3097, 3254
Tru1I	TTAA	6 cut(s)	1013, 1203, 2841, 3084, 3197, 3282
Tru9I	TTAA	6 cut(s)	1013, 1203, 2841, 3084, 3197, 3282
TscAI	CASTG	6 cut(s)	1089, 1136, 1257, 2604, 2973, 3074
TseFI	GTSAC	4 cut(s)	1336, 1561, 2209, 3124
TseI	GCWGC	6 cut(s)	368, 518, 1781, 1784, 2111, 2225
Tsp45I	GTSAC	4 cut(s)	1336, 1561, 2209, 3124
TspGWI	ACGGA	4 cut(s)	806, 2771, 2846, 3178
TspRI	CASTG	6 cut(s)	1089, 1136, 1257, 2604, 2973, 3074
Tth111I	GACNNNGTC	2 cut(s)	774, 2744
VpaK11BI	GGWCC	6 cut(s)	99, 215, 866, 2347, 2641, 3165
XapI	RAATTY	5 cut(s)	1117, 1744, 2010, 2429, 2571
XbaI	TCTAGA	1 cut(s)	2195
XceI	RCATGY	3 cut(s)	514, 1528, 2778
XhoI	CTCGAG	1 cut(s)	1278
XmnI	GAANNNNTTC	3 cut(s)	255, 348, 2429
XspI	CTAG	8 cut(s)	141, 543, 569, 1113, 1799, 2196, 2564, 3290
ZrmI	AGTACT	1 cut(s)	1396
Zsp2I	ATGCAT	1 cut(s)	1530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.