protease Do-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G03380 AT3G03380 |
| fragaria_vesca | FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 |
| malus_domestica | MD17G1256700.v1.1 |
| prunus_persica | Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 |
| pyrus_communis | pycom17g25890 |
| rosa_chinensis | RchiOBHm_Chr7g0220101 |
| rosa_laevigata | RLG00000002258 |
| rosa_multiflora | Rmu_sc0007553.1_g000006 Rmu_sc0018981.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00239790 |
| rosa_rugosa | Rorug07G0188800 Rorug07G0188900 Rorug07G0188900 Rorug07G0189000 |
| rosa_samantha | Rh7AG332500 Rh7BG322400 Rh7CG350000 Rh7DG328200 |
| rosa_wichuraiana | Rw7G028000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1547 |
| Acc65I | GGTACC | 2 cut(s) | 925, 2162 |
| AccB1I | GGYRCC | 3 cut(s) | 925, 2162, 3297 |
| AccI | GTMKAC | 1 cut(s) | 333 |
| AccII | CGCG | 4 cut(s) | 176, 246, 835, 1602 |
| AciI | CCGC | 6 cut(s) | 174, 201, 244, 246, 1711, 2313 |
| AcoI | YGGCCR | 1 cut(s) | 105 |
| AcsI | RAATTY | 6 cut(s) | 1186, 1688, 1726, 2079, 2453, 2601 |
| AcuI | CTGAAG | 6 cut(s) | 669, 782, 833, 1686, 2493, 3080 |
| AcvI | CACGTG | 1 cut(s) | 1454 |
| AcyI | GRCGYC | 1 cut(s) | 1629 |
| AfeI | AGCGCT | 1 cut(s) | 682 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 73, 120, 1012, 1408, 2818, 2886, 3026 |
| AflIII | ACRYGT | 2 cut(s) | 1451, 2716 |
| AjiI | CACGTC | 2 cut(s) | 2047, 2897 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3168, 3200 |
| Alw21I | GWGCWC | 3 cut(s) | 1348, 2548, 3007 |
| Alw26I | GTCTC | 5 cut(s) | 781, 824, 1010, 1538, 2763 |
| Ama87I | CYCGRG | 3 cut(s) | 1338, 1347, 1680 |
| Aor51HI | AGCGCT | 1 cut(s) | 682 |
| ApeKI | GCWGC | 5 cut(s) | 587, 1838, 2063, 2180, 2294 |
| ApoI | RAATTY | 6 cut(s) | 1186, 1688, 1726, 2079, 2453, 2601 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2638, 2670, 3168, 3200 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 324, 417, 2190 |
| Asp718I | GGTACC | 2 cut(s) | 925, 2162 |
| AspLEI | GCGC | 5 cut(s) | 133, 243, 683, 837, 3319 |
| AsuHPI | GGTGA | 7 cut(s) | 250, 494, 814, 905, 1298, 1796, 3194 |
| AsuNHI | GCTAGC | 1 cut(s) | 209 |
| AvaI | CYCGRG | 3 cut(s) | 1338, 1347, 1680 |
| AvaII | GGWCC | 5 cut(s) | 284, 935, 1559, 2416, 2671 |
| AxyI | CCTNAGG | 1 cut(s) | 432 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2154, 2187 |
| BamHI | GGATCC | 3 cut(s) | 349, 1795, 2983 |
| BanI | GGYRCC | 3 cut(s) | 925, 2162, 3297 |
| BauI | CACGAG | 4 cut(s) | 786, 1610, 2912, 2949 |
| BbrPI | CACGTG | 1 cut(s) | 1454 |
| BbsI | GAAGAC | 1 cut(s) | 2710 |
| Bbv12I | GWGCWC | 3 cut(s) | 1348, 2548, 3007 |
| BbvI | GCAGC | 5 cut(s) | 574, 1825, 2050, 2167, 2281 |
| BccI | CCATC | 7 cut(s) | 545, 1619, 1733, 1931, 2432, 2855, 2927 |
| BceAI | ACGGC | 2 cut(s) | 120, 137 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 854, 888 |
| BcoDI | GTCTC | 5 cut(s) | 781, 824, 1010, 1538, 2763 |
| BfaI | CTAG | 9 cut(s) | 210, 452, 1182, 1635, 2265, 2525, 2594, 3219, 3320 |
| BfmI | CTRYAG | 3 cut(s) | 288, 1086, 1881 |
| BfoI | RGCGCY | 4 cut(s) | 134, 244, 684, 3320 |
| BfuAI | ACCTGC | 1 cut(s) | 1547 |
| BisI | GCNGC | 8 cut(s) | 201, 244, 588, 1712, 1839, 2064, 2181, 2295 |
| BlpI | GCTNAGC | 1 cut(s) | 134 |
| BlsI | GCNGC | 8 cut(s) | 202, 245, 589, 1713, 1840, 2065, 2182, 2296 |
| Bme18I | GGWCC | 5 cut(s) | 284, 935, 1559, 2416, 2671 |
| BmeT110I | CYCGRG | 3 cut(s) | 1338, 1347, 1680 |
| BmgBI | CACGTC | 2 cut(s) | 2047, 2897 |
| BmrI | ACTGGG | 1 cut(s) | 909 |
| BmsI | GCATC | 9 cut(s) | 63, 520, 890, 894, 1492, 1684, 2040, 2505, 3130 |
| BmtI | GCTAGC | 1 cut(s) | 213 |
| BmuI | ACTGGG | 1 cut(s) | 909 |
| BoxI | GACNNNNGTC | 1 cut(s) | 809 |
| BpiI | GAAGAC | 1 cut(s) | 2710 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 761, 793 |
| BpmI | CTGGAG | 6 cut(s) | 35, 142, 719, 1034, 1269, 1811 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 134 |
| BpuEI | CTTGAG | 3 cut(s) | 1325, 1925, 2532 |
| Bsa29I | ATCGAT | 1 cut(s) | 81 |
| BsaAI | YACGTR | 2 cut(s) | 1454, 2717 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1383, 2988 |
| BsaHI | GRCGYC | 1 cut(s) | 1629 |
| BsaI | GGTCTC | 2 cut(s) | 1010, 1538 |
| BsaJI | CCNNGG | 9 cut(s) | 72, 244, 888, 889, 959, 1806, 2148, 2149, 2324 |
| BsaWI | WCCGGW | 1 cut(s) | 352 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 53, 83, 1151, 1181, 2760, 2790 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 73, 120, 1012, 1408, 2818, 2886, 3026 |
| Bse118I | RCCGGY | 1 cut(s) | 3329 |
| Bse21I | CCTNAGG | 1 cut(s) | 432 |
| Bse3DI | GCAATG | 1 cut(s) | 2627 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1383, 2988 |
| BseCI | ATCGAT | 1 cut(s) | 81 |
| BseDI | CCNNGG | 9 cut(s) | 72, 244, 888, 889, 959, 1806, 2148, 2149, 2324 |
| BseJI | GATNNNNATC | 2 cut(s) | 1383, 2988 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 73, 120, 1012, 1408, 2818, 2886, 3026 |
| BseMI | GCAATG | 1 cut(s) | 2627 |
| BseMII | CTCAG | 6 cut(s) | 148, 186, 423, 2459, 2648, 3260 |
| BseRI | GAGGAG | 2 cut(s) | 525, 2547 |
| BseXI | GCAGC | 5 cut(s) | 574, 1825, 2050, 2167, 2281 |
| BseYI | CCCAGC | 2 cut(s) | 22, 148 |
| BsgI | GTGCAG | 1 cut(s) | 1121 |
| Bsh1236I | CGCG | 4 cut(s) | 176, 246, 835, 1602 |
| BshNI | GGYRCC | 3 cut(s) | 925, 2162, 3297 |
| BshVI | ATCGAT | 1 cut(s) | 81 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1348, 2548, 3007 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1338, 1347, 1680 |
| BsiSI | CCGG | 3 cut(s) | 353, 2993, 3330 |
| BslFI | GGGAC | 4 cut(s) | 131, 1602, 1978, 2907 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 73, 120, 1012, 1408, 2818, 2886, 3026 |
| BsmAI | GTCTC | 5 cut(s) | 781, 824, 1010, 1538, 2763 |
| BsmBI | CGTCTC | 1 cut(s) | 824 |
| BsmFI | GGGAC | 4 cut(s) | 131, 1602, 1978, 2907 |
| BsmI | GAATGC | 2 cut(s) | 664, 1819 |
| Bso31I | GGTCTC | 2 cut(s) | 1010, 1538 |
| BsoBI | CYCGRG | 3 cut(s) | 1338, 1347, 1680 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1348, 2548, 3007 |
| Bsp1407I | TGTACA | 1 cut(s) | 1942 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 134 |
| Bsp19I | CCATGG | 2 cut(s) | 72, 1806 |
| Bsp68I | TCGCGA | 1 cut(s) | 1602 |
| BspACI | CCGC | 6 cut(s) | 174, 201, 244, 246, 1711, 2313 |
| BspCNI | CTCAG | 6 cut(s) | 147, 187, 424, 2458, 2649, 3261 |
| BspDI | ATCGAT | 1 cut(s) | 81 |
| BspFNI | CGCG | 4 cut(s) | 176, 246, 835, 1602 |
| BspMI | ACCTGC | 1 cut(s) | 1547 |
| BspOI | GCTAGC | 1 cut(s) | 213 |
| BspQI | GCTCTTC | 1 cut(s) | 3099 |
| BspT107I | GGYRCC | 3 cut(s) | 925, 2162, 3297 |
| BspTNI | GGTCTC | 2 cut(s) | 1010, 1538 |
| BsrDI | GCAATG | 1 cut(s) | 2627 |
| BsrFI | RCCGGY | 1 cut(s) | 3329 |
| BsrGI | TGTACA | 1 cut(s) | 1942 |
| BssAI | RCCGGY | 1 cut(s) | 3329 |
| BssECI | CCNNGG | 9 cut(s) | 72, 244, 888, 889, 959, 1806, 2148, 2149, 2324 |
| BssNAI | GTATAC | 1 cut(s) | 334 |
| BssNI | GRCGYC | 1 cut(s) | 1629 |
| BssSI | CACGAG | 4 cut(s) | 786, 1610, 2912, 2949 |
| BssT1I | CCWWGG | 2 cut(s) | 72, 1806 |
| Bst1107I | GTATAC | 1 cut(s) | 334 |
| Bst2BI | CACGAG | 4 cut(s) | 786, 1610, 2912, 2949 |
| Bst6I | CTCTTC | 3 cut(s) | 408, 2565, 3099 |
| BstACI | GRCGYC | 1 cut(s) | 1629 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 2036, 3002, 3244 |
| BstAUI | TGTACA | 1 cut(s) | 1942 |
| BstBAI | YACGTR | 2 cut(s) | 1454, 2717 |
| BstC8I | GCNNGC | 7 cut(s) | 211, 585, 1331, 1488, 1659, 2867, 3003 |
| BstDEI | CTNAG | 9 cut(s) | 134, 195, 432, 703, 1135, 1565, 2445, 2657, 3269 |
| BstDSI | CCRYGG | 4 cut(s) | 72, 244, 1806, 2324 |
| BstEII | GGTNACC | 1 cut(s) | 1784 |
| BstFNI | CGCG | 4 cut(s) | 176, 246, 835, 1602 |
| BstH2I | RGCGCY | 4 cut(s) | 134, 244, 684, 3320 |
| BstHHI | GCGC | 5 cut(s) | 133, 243, 683, 837, 3319 |
| BstMAI | GTCTC | 5 cut(s) | 781, 824, 1010, 1538, 2763 |
| BstNSI | RCATGY | 3 cut(s) | 583, 1661, 2808 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 809 |
| BstPI | GGTNACC | 1 cut(s) | 1784 |
| BstSFI | CTRYAG | 3 cut(s) | 288, 1086, 1881 |
| BstUI | CGCG | 4 cut(s) | 176, 246, 835, 1602 |
| BstV1I | GCAGC | 5 cut(s) | 574, 1825, 2050, 2167, 2281 |
| BstV2I | GAAGAC | 1 cut(s) | 2710 |
| BstX2I | RGATCY | 7 cut(s) | 349, 617, 1309, 1795, 2692, 2738, 2983 |
| BstYI | RGATCY | 7 cut(s) | 349, 617, 1309, 1795, 2692, 2738, 2983 |
| BstZ17I | GTATAC | 1 cut(s) | 334 |
| Bsu15I | ATCGAT | 1 cut(s) | 81 |
| Bsu36I | CCTNAGG | 1 cut(s) | 432 |
| BsuTUI | ATCGAT | 1 cut(s) | 81 |
| BtgI | CCRYGG | 4 cut(s) | 72, 244, 1806, 2324 |
| BtgZI | GCGATG | 1 cut(s) | 1583 |
| BtrI | CACGTC | 2 cut(s) | 2047, 2897 |
| BtsI | GCAGTG | 3 cut(s) | 654, 1158, 3003 |
| BtuMI | TCGCGA | 1 cut(s) | 1602 |
| BveI | ACCTGC | 1 cut(s) | 1547 |
| Cac8I | GCNNGC | 7 cut(s) | 211, 585, 1331, 1488, 1659, 2867, 3003 |
| CfoI | GCGC | 5 cut(s) | 133, 243, 683, 837, 3319 |
| Cfr10I | RCCGGY | 1 cut(s) | 3329 |
| Cfr42I | CCGCGG | 1 cut(s) | 247 |
| ClaI | ATCGAT | 1 cut(s) | 81 |
| CseI | GACGC | 2 cut(s) | 841, 1618 |
| CsiI | ACCWGGT | 1 cut(s) | 928 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 208, 243 |
| DdeI | CTNAG | 9 cut(s) | 134, 195, 432, 703, 1135, 1565, 2445, 2657, 3269 |
| EaeI | YGGCCR | 1 cut(s) | 105 |
| Eam1104I | CTCTTC | 3 cut(s) | 408, 2565, 3099 |
| EarI | CTCTTC | 3 cut(s) | 408, 2565, 3099 |
| Eco130I | CCWWGG | 2 cut(s) | 72, 1806 |
| Eco31I | GGTCTC | 2 cut(s) | 1010, 1538 |
| Eco47I | GGWCC | 5 cut(s) | 284, 935, 1559, 2416, 2671 |
| Eco47III | AGCGCT | 1 cut(s) | 682 |
| Eco57I | CTGAAG | 6 cut(s) | 669, 782, 833, 1686, 2493, 3080 |
| Eco72I | CACGTG | 1 cut(s) | 1454 |
| Eco81I | CCTNAGG | 1 cut(s) | 432 |
| Eco88I | CYCGRG | 3 cut(s) | 1338, 1347, 1680 |
| Eco91I | GGTNACC | 1 cut(s) | 1784 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1559, 2552 |
| EcoO65I | GGTNACC | 1 cut(s) | 1784 |
| EcoT14I | CCWWGG | 2 cut(s) | 72, 1806 |
| EcoT22I | ATGCAT | 1 cut(s) | 883 |
| ErhI | CCWWGG | 2 cut(s) | 72, 1806 |
| Esp3I | CGTCTC | 1 cut(s) | 824 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1475, 1507, 3227, 3259 |
| FaqI | GGGAC | 4 cut(s) | 131, 1602, 1978, 2907 |
| FauI | CCCGC | 1 cut(s) | 239 |
| FauNDI | CATATG | 1 cut(s) | 2134 |
| FblI | GTMKAC | 1 cut(s) | 333 |
| Fnu4HI | GCNGC | 8 cut(s) | 201, 244, 588, 1712, 1839, 2064, 2181, 2295 |
| Fsp4HI | GCNGC | 8 cut(s) | 201, 244, 588, 1712, 1839, 2064, 2181, 2295 |
| FspBI | CTAG | 9 cut(s) | 210, 452, 1182, 1635, 2265, 2525, 2594, 3219, 3320 |
| GlaI | GCGC | 5 cut(s) | 132, 242, 682, 836, 3318 |
| GluI | GCNGC | 8 cut(s) | 201, 244, 588, 1712, 1839, 2064, 2181, 2295 |
| GsaI | CCCAGC | 2 cut(s) | 26, 152 |
| GsuI | CTGGAG | 6 cut(s) | 35, 142, 719, 1034, 1269, 1811 |
| HaeII | RGCGCY | 4 cut(s) | 134, 244, 684, 3320 |
| HapII | CCGG | 3 cut(s) | 353, 2993, 3330 |
| HgaI | GACGC | 2 cut(s) | 841, 1618 |
| HhaI | GCGC | 5 cut(s) | 133, 243, 683, 837, 3319 |
| Hin1I | GRCGYC | 1 cut(s) | 1629 |
| Hin6I | GCGC | 5 cut(s) | 131, 241, 681, 835, 3317 |
| HinP1I | GCGC | 5 cut(s) | 131, 241, 681, 835, 3317 |
| HincII | GTYRAC | 1 cut(s) | 2014 |
| HindII | GTYRAC | 1 cut(s) | 2014 |
| HindIII | AAGCTT | 1 cut(s) | 2867 |
| HinfI | GANTC | 7 cut(s) | 47, 418, 749, 1891, 2219, 3127, 3284 |
| HpaII | CCGG | 3 cut(s) | 353, 2993, 3330 |
| HphI | GGTGA | 7 cut(s) | 250, 494, 814, 905, 1298, 1796, 3194 |
| Hpy166II | GTNNAC | 8 cut(s) | 313, 334, 1943, 2014, 2113, 2274, 2324, 3202 |
| Hpy188I | TCNGA | 9 cut(s) | 31, 852, 1222, 1538, 1666, 1738, 2044, 2473, 2658 |
| Hpy8I | GTNNAC | 8 cut(s) | 313, 334, 1943, 2014, 2113, 2274, 2324, 3202 |
| Hpy99I | CGWCG | 6 cut(s) | 119, 158, 161, 236, 1634, 2214 |
| HpyAV | CCTTC | 7 cut(s) | 196, 857, 1383, 1714, 1775, 2406, 3020 |
| HpyCH4IV | ACGT | 6 cut(s) | 1453, 1876, 2046, 2209, 2716, 2896 |
| HpyF3I | CTNAG | 9 cut(s) | 134, 195, 432, 703, 1135, 1565, 2445, 2657, 3269 |
| HpySE526I | ACGT | 6 cut(s) | 1453, 1876, 2046, 2209, 2716, 2896 |
| Hsp92I | GRCGYC | 1 cut(s) | 1629 |
| HspAI | GCGC | 5 cut(s) | 131, 241, 681, 835, 3317 |
| KpnI | GGTACC | 2 cut(s) | 929, 2166 |
| KspI | CCGCGG | 1 cut(s) | 247 |
| LguI | GCTCTTC | 1 cut(s) | 3099 |
| LmnI | GCTCC | 6 cut(s) | 538, 955, 2153, 2315, 2794, 3265 |
| Lsp1109I | GCAGC | 5 cut(s) | 574, 1825, 2050, 2167, 2281 |
| LweI | GCATC | 9 cut(s) | 63, 520, 890, 894, 1492, 1684, 2040, 2505, 3130 |
| MabI | ACCWGGT | 1 cut(s) | 928 |
| MaeI | CTAG | 9 cut(s) | 210, 452, 1182, 1635, 2265, 2525, 2594, 3219, 3320 |
| MaeII | ACGT | 6 cut(s) | 1453, 1876, 2046, 2209, 2716, 2896 |
| MaeIII | GTNAC | 9 cut(s) | 470, 554, 802, 1405, 1784, 2205, 2278, 2800, 3154 |
| MfeI | CAATTG | 1 cut(s) | 2073 |
| MflI | RGATCY | 7 cut(s) | 349, 617, 1309, 1795, 2692, 2738, 2983 |
| MhlI | GDGCHC | 3 cut(s) | 1348, 2548, 3007 |
| MlyI | GAGTC | 2 cut(s) | 1885, 3121 |
| Mph1103I | ATGCAT | 1 cut(s) | 883 |
| MroXI | GAANNNNTTC | 3 cut(s) | 324, 417, 2190 |
| MseI | TTAA | 6 cut(s) | 1038, 1082, 1272, 2240, 2300, 3312 |
| MslI | CAYNNNNRTG | 3 cut(s) | 308, 2118, 3078 |
| MspA1I | CMGCKG | 4 cut(s) | 203, 246, 2315, 2449 |
| MspI | CCGG | 3 cut(s) | 353, 2993, 3330 |
| MunI | CAATTG | 1 cut(s) | 2073 |
| Mva1269I | GAATGC | 2 cut(s) | 664, 1819 |
| MvnI | CGCG | 4 cut(s) | 176, 246, 835, 1602 |
| NcoI | CCATGG | 2 cut(s) | 72, 1806 |
| NdeI | CATATG | 1 cut(s) | 2134 |
| NheI | GCTAGC | 1 cut(s) | 209 |
| NmuCI | GTSAC | 4 cut(s) | 802, 1405, 1784, 2278 |
| NruI | TCGCGA | 1 cut(s) | 1602 |
| NsiI | ATGCAT | 1 cut(s) | 883 |
| NspI | RCATGY | 3 cut(s) | 583, 1661, 2808 |
| PaeI | GCATGC | 1 cut(s) | 1661 |
| PaeR7I | CTCGAG | 1 cut(s) | 1347 |
| PasI | CCCWGGG | 2 cut(s) | 889, 2149 |
| PciSI | GCTCTTC | 1 cut(s) | 3099 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 150, 1345, 2893 |
| PctI | GAATGC | 2 cut(s) | 664, 1819 |
| PdmI | GAANNNNTTC | 3 cut(s) | 324, 417, 2190 |
| PfeI | GAWTC | 5 cut(s) | 47, 418, 749, 2219, 3284 |
| PkrI | GCNGC | 8 cut(s) | 202, 245, 589, 1713, 1840, 2065, 2182, 2296 |
| PleI | GAGTC | 2 cut(s) | 1885, 3121 |
| PmaCI | CACGTG | 1 cut(s) | 1454 |
| PmlI | CACGTG | 1 cut(s) | 1454 |
| PpsI | GAGTC | 2 cut(s) | 1885, 3121 |
| Ppu21I | YACGTR | 2 cut(s) | 1454, 2717 |
| PpuMI | RGGWCCY | 1 cut(s) | 1559 |
| PshAI | GACNNNNGTC | 1 cut(s) | 809 |
| Psp5II | RGGWCCY | 1 cut(s) | 1559 |
| PspCI | CACGTG | 1 cut(s) | 1454 |
| PspEI | GGTNACC | 1 cut(s) | 1784 |
| PspFI | CCCAGC | 2 cut(s) | 22, 148 |
| PspPPI | RGGWCCY | 1 cut(s) | 1559 |
| PspXI | VCTCGAGB | 1 cut(s) | 1347 |
| PsuI | RGATCY | 7 cut(s) | 349, 617, 1309, 1795, 2692, 2738, 2983 |
| PvuII | CAGCTG | 1 cut(s) | 2449 |
| RruI | TCGCGA | 1 cut(s) | 1602 |
| RseI | CAYNNNNRTG | 3 cut(s) | 308, 2118, 3078 |
| SacII | CCGCGG | 1 cut(s) | 247 |
| SapI | GCTCTTC | 1 cut(s) | 3099 |
| SaqAI | TTAA | 6 cut(s) | 1038, 1082, 1272, 2240, 2300, 3312 |
| SatI | GCNGC | 8 cut(s) | 201, 244, 588, 1712, 1839, 2064, 2181, 2295 |
| SchI | GAGTC | 2 cut(s) | 1885, 3121 |
| SduI | GDGCHC | 3 cut(s) | 1348, 2548, 3007 |
| SexAI | ACCWGGT | 1 cut(s) | 928 |
| SfaNI | GCATC | 9 cut(s) | 63, 520, 890, 894, 1492, 1684, 2040, 2505, 3130 |
| SfcI | CTRYAG | 3 cut(s) | 288, 1086, 1881 |
| Sfr274I | CTCGAG | 1 cut(s) | 1347 |
| Sfr303I | CCGCGG | 1 cut(s) | 247 |
| SgrBI | CCGCGG | 1 cut(s) | 247 |
| SinI | GGWCC | 5 cut(s) | 284, 935, 1559, 2416, 2671 |
| SlaI | CTCGAG | 1 cut(s) | 1347 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 308, 2118, 3078 |
| SmlI | CTYRAG | 4 cut(s) | 1304, 1347, 1904, 2547 |
| SmoI | CTYRAG | 4 cut(s) | 1304, 1347, 1904, 2547 |
| SphI | GCATGC | 1 cut(s) | 1661 |
| SsiI | CCGC | 6 cut(s) | 174, 201, 244, 246, 1711, 2313 |
| SspI | AATATT | 1 cut(s) | 2305 |
| SspMI | CTAG | 9 cut(s) | 210, 452, 1182, 1635, 2265, 2525, 2594, 3219, 3320 |
| StyI | CCWWGG | 2 cut(s) | 72, 1806 |
| TaiI | ACGT | 6 cut(s) | 1456, 1879, 2049, 2212, 2719, 2899 |
| TaqI | TCGA | 9 cut(s) | 50, 81, 189, 234, 1348, 1387, 1935, 2355, 2613 |
| TatI | WGTACW | 2 cut(s) | 1942, 2378 |
| TauI | GCSGC | 3 cut(s) | 203, 246, 1714 |
| TfiI | GAWTC | 5 cut(s) | 47, 418, 749, 2219, 3284 |
| Tru1I | TTAA | 6 cut(s) | 1038, 1082, 1272, 2240, 2300, 3312 |
| Tru9I | TTAA | 6 cut(s) | 1038, 1082, 1272, 2240, 2300, 3312 |
| TseFI | GTSAC | 4 cut(s) | 802, 1405, 1784, 2278 |
| TseI | GCWGC | 5 cut(s) | 587, 1838, 2063, 2180, 2294 |
| Tsp45I | GTSAC | 4 cut(s) | 802, 1405, 1784, 2278 |
| TspGWI | ACGGA | 1 cut(s) | 2801 |
| VpaK11BI | GGWCC | 5 cut(s) | 284, 935, 1559, 2416, 2671 |
| XapI | RAATTY | 6 cut(s) | 1186, 1688, 1726, 2079, 2453, 2601 |
| XbaI | TCTAGA | 2 cut(s) | 451, 2264 |
| XceI | RCATGY | 3 cut(s) | 583, 1661, 2808 |
| XhoI | CTCGAG | 1 cut(s) | 1347 |
| XmiI | GTMKAC | 1 cut(s) | 333 |
| XmnI | GAANNNNTTC | 3 cut(s) | 324, 417, 2190 |
| XspI | CTAG | 9 cut(s) | 210, 452, 1182, 1635, 2265, 2525, 2594, 3219, 3320 |
| Zsp2I | ATGCAT | 1 cut(s) | 883 |