Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003866

Physical Location & Seq

Genomic Coordinates Reverse (-)

1042700 .. 1044813

Gene Structure 2114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04030.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGTATTACCAAAACCAGCACCAAGGAAAGAACATCCTCTCATCTTCAAGAATGCATATAACTTCTGAAAGGCATCCATTCCTTAGAGGGAATAGTCCAGGTGATTCTGGACTTATCCTATCAACCGATGCAAAGCCACGCCTAAAATGGACTCCAGATCTTCATGAGAGATTCATTGAAGCAGTCAATCAACTCGGTGGAGCAGATAAAGCTACTCCTAAGACAATCATGAAAGTCATGGGGATTCCAGGCCTTACCTTATACCATCTCAAAAGTCATCTTCAGAAATACAGGCTGAGCAAGAATCTCAACGGACAAGCTAACAACAGCTTCAACAAAATAGGTATAATGACCATGATGGAAGAAAAGACTCCTGATGCAGACGAAATTCAAAGCGAGAATTTAAGCATTGGACCACAGCCAAACAAGAATTCACCAATAGGTGAAGCACTGCAAATGCAAATAGAGGTCCAAAGAAGGCTTCATGAGCAACTTGAGCTTAGGATAGAGGCTCAAGGGAAGTACCTGCAATCGGTTTTGGAGAAAGCACAAGAGACTCTTGGAAGACAGAACCTCGGTGCAGCTGGGATCGAAGCTGCCAAAGTTCAACTCTCGGAACTAGTATCTAAAGTATCAGCAGAGTACCCAAACTCTAGTTTCCTAGAACCAAAAGAACTTCAAAACCTATGCTCACAACAGATGCAAACAAACTATCCACCTGATTGCTCTCTTGAAAGTTGCCTGACCTCAAGCGAGGGAACGCAGAAAAACTCGAAAATGCTAGAGAACAACAGATTAGGACTAAGAACGTATATTGGTGATTCAACATCGGAGCAGAAAGAGATTATGGAAGAACCATTGTTCCAAAGAATGGAGCTCACATGGACAGAAGGTCTAAGAGGGAATCCATATCTTTCAACAATGGTGAGTGAAGCAGAACAAAGAATCTCATATTCAGAAAGAAGTCCAGGTAGATTATCAATAGGAGTAGGATTGCACGGACACAAAAGCCAACATCAACAAGGCAACAATGAGGATCATAAGCTTGAAACACGAAACCGGAAAGGCATGGATTCAACAACAGAGCTAGATCTCAACACACATGTTGAAAACTATTGTACAACGCGTACGAAACAGTTCGACTTGAATGGTTTCAGCTGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

388

Amino Acids

43.85

Weight (kDa)

6.48

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_CC_LHEQLE	PF14379	71 - 116	2.9e-25	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240
fragaria_vesca	FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990
malus_domestica	MD12G1001900.v1.1 MD14G1001600.v1.1
prunus_persica	Prupe.7G001700_v2.0.a1
pyrus_communis	pycom12g00160 pycom49g00110
rosa_chinensis	RchiOBHm_Chr3g0497321
rosa_laevigata	RLG00000022467
rosa_multiflora	Rmu_sc0001329.1_g000016
rosa_roxburghii	Rroxscaffold_6G00388110
rosa_rugosa	Rorug03G0292200 Rorug03G0292300 Rorug03G0292400 Rorug03G0292500
rosa_samantha	Rh3AG335900 Rh3BG374100 Rh3CG370000 Rh3DG371000
rosa_wichuraiana	Rw3G029540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	534
AccB7I	CCANNNNNTGG	1 cut(s)	871
AccII	CGCG	1 cut(s)	1126
AclWI	GGATC	2 cut(s)	596, 1044
AcsI	RAATTY	3 cut(s)	387, 400, 430
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	4 cut(s)	524, 644, 1120, 1129
AfiI	CCNNNNNNNGG	2 cut(s)	532, 871
AflIII	ACRYGT	2 cut(s)	1102, 1124
AhdI	GACNNNNNGTC	1 cut(s)	891
AhlI	ACTAGT	1 cut(s)	619
AjnI	CCWGG	3 cut(s)	97, 247, 967
AjuI	GAANNNNNNNTTGG	4 cut(s)	415, 447, 465, 497
AloI	GAACNNNNNNTCC	2 cut(s)	846, 878
Alw21I	GWGCWC	1 cut(s)	879
Alw26I	GTCTC	1 cut(s)	548
AlwI	GGATC	2 cut(s)	596, 1044
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	2 cut(s)	581, 596
ApoI	RAATTY	3 cut(s)	387, 400, 430
Asp700I	GAANNNNTTC	2 cut(s)	1136, 1151
AspS9I	GGNCC	2 cut(s)	413, 469
AsuHPI	GGTGA	5 cut(s)	113, 426, 455, 830, 937
AvaII	GGWCC	2 cut(s)	413, 469
BanII	GRGCYC	1 cut(s)	879
BbsI	GAAGAC	1 cut(s)	571
Bbv12I	GWGCWC	1 cut(s)	879
BbvI	GCAGC	2 cut(s)	583, 593
BccI	CCATC	2 cut(s)	273, 352
BciT130I	CCWGG	3 cut(s)	99, 249, 969
BcoDI	GTCTC	1 cut(s)	548
BcuI	ACTAGT	1 cut(s)	619
BfaI	CTAG	5 cut(s)	620, 654, 662, 782, 1088
BfuAI	ACCTGC	1 cut(s)	534
BglII	AGATCT	2 cut(s)	157, 1090
BisI	GCNGC	2 cut(s)	582, 597
BlpI	GCTNAGC	1 cut(s)	296
BlsI	GCNGC	2 cut(s)	583, 598
Bme1390I	CCNGG	3 cut(s)	99, 249, 969
Bme18I	GGWCC	2 cut(s)	413, 469
BmeRI	GACNNNNNGTC	1 cut(s)	891
BmgT120I	GGNCC	2 cut(s)	413, 469
BmrFI	CCNGG	3 cut(s)	99, 249, 969
BmsI	GCATC	4 cut(s)	82, 118, 367, 690
BpiI	GAAGAC	1 cut(s)	571
BpmI	CTGGAG	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	500
Bpu1102I	GCTNAGC	1 cut(s)	296
BpuEI	CTTGAG	3 cut(s)	498, 515, 733
BsaJI	CCNNGG	2 cut(s)	22, 574
BsaWI	WCCGGW	1 cut(s)	1059
Bsc4I	CCNNNNNNNGG	2 cut(s)	532, 871
BseBI	CCWGG	3 cut(s)	99, 249, 969
BseDI	CCNNGG	2 cut(s)	22, 574
BseGI	GGATG	2 cut(s)	33, 73
BseLI	CCNNNNNNNGG	2 cut(s)	532, 871
BseMII	CTCAG	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	583, 593
BseYI	CCCAGC	1 cut(s)	584
BsgI	GTGCAG	1 cut(s)	600
Bsh1236I	CGCG	1 cut(s)	1126
BshFI	GGCC	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	879
BsiSI	CCGG	1 cut(s)	1060
BsiWI	CGTACG	1 cut(s)	1127
BslI	CCNNNNNNNGG	2 cut(s)	532, 871
BsmAI	GTCTC	1 cut(s)	548
BsmI	GAATGC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	879
Bsp1407I	TGTACA	1 cut(s)	1118
Bsp143I	GATC	4 cut(s)	157, 588, 1036, 1090
Bsp1720I	GCTNAGC	1 cut(s)	296
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	1 cut(s)	288
BspFNI	CGCG	1 cut(s)	1126
BspHI	TCATGA	3 cut(s)	163, 228, 484
BspMI	ACCTGC	1 cut(s)	534
BspPI	GGATC	2 cut(s)	596, 1044
BsrGI	TGTACA	1 cut(s)	1118
BssECI	CCNNGG	2 cut(s)	22, 574
BssMI	GATC	4 cut(s)	157, 588, 1036, 1090
BssT1I	CCWWGG	1 cut(s)	22
Bst2UI	CCWGG	3 cut(s)	99, 249, 969
Bst4CI	ACNGT	1 cut(s)	1137
BstAUI	TGTACA	1 cut(s)	1118
BstDEI	CTNAG	6 cut(s)	83, 219, 296, 500, 803, 896
BstF5I	GGATG	2 cut(s)	33, 73
BstFNI	CGCG	1 cut(s)	1126
BstKTI	GATC	4 cut(s)	160, 591, 1039, 1093
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	4 cut(s)	157, 588, 1036, 1090
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 487, 496
BstNI	CCWGG	3 cut(s)	99, 249, 969
BstNSI	RCATGY	1 cut(s)	1106
BstSCI	CCNGG	3 cut(s)	97, 247, 967
BstUI	CGCG	1 cut(s)	1126
BstV1I	GCAGC	2 cut(s)	583, 593
BstV2I	GAAGAC	1 cut(s)	571
BstX2I	RGATCY	2 cut(s)	157, 1090
BstYI	RGATCY	2 cut(s)	157, 1090
BsuRI	GGCC	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	33, 73
BtsI	GCAGTG	1 cut(s)	449
BtsIMutI	CAGTG	1 cut(s)	449
BveI	ACCTGC	1 cut(s)	534
CciI	TCATGA	3 cut(s)	163, 228, 484
Cfr13I	GGNCC	2 cut(s)	413, 469
Csp6I	GTAC	4 cut(s)	523, 643, 1119, 1128
CviAII	CATG	8 cut(s)	164, 229, 238, 355, 485, 882, 1069, 1103
CviQI	GTAC	4 cut(s)	523, 643, 1119, 1128
DdeI	CTNAG	6 cut(s)	83, 219, 296, 500, 803, 896
DpnI	GATC	4 cut(s)	159, 590, 1038, 1092
DpnII	GATC	4 cut(s)	157, 588, 1036, 1090
DriI	GACNNNNNGTC	1 cut(s)	891
Eam1105I	GACNNNNNGTC	1 cut(s)	891
Ecl136II	GAGCTC	1 cut(s)	877
Eco130I	CCWWGG	1 cut(s)	22
Eco147I	AGGCCT	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	879
Eco47I	GGWCC	2 cut(s)	413, 469
Eco53kI	GAGCTC	1 cut(s)	877
Eco57I	CTGAAG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	877
EcoRI	GAATTC	1 cut(s)	430
EcoRII	CCWGG	3 cut(s)	97, 247, 967
EcoT14I	CCWWGG	1 cut(s)	22
EcoT22I	ATGCAT	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	879
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	8 cut(s)	167, 232, 241, 358, 488, 885, 1072, 1106
FalI	AAGNNNNNCTT	2 cut(s)	543, 575
FatI	CATG	8 cut(s)	163, 228, 237, 354, 484, 881, 1068, 1102
Fnu4HI	GCNGC	2 cut(s)	582, 597
FokI	GGATG	2 cut(s)	20, 60
FriOI	GRGCYC	1 cut(s)	879
Fsp4HI	GCNGC	2 cut(s)	582, 597
FspBI	CTAG	5 cut(s)	620, 654, 662, 782, 1088
GluI	GCNGC	2 cut(s)	582, 597
GsaI	CCCAGC	1 cut(s)	588
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	1 cut(s)	1060
Hin1II	CATG	8 cut(s)	167, 232, 241, 358, 488, 885, 1072, 1106
HindIII	AAGCTT	1 cut(s)	1043
HpaII	CCGG	1 cut(s)	1060
HphI	GGTGA	5 cut(s)	113, 426, 455, 830, 937
Hpy188I	TCNGA	5 cut(s)	67, 285, 616, 832, 958
Hpy188III	TCNNGA	8 cut(s)	48, 108, 155, 164, 229, 374, 485, 731
HpyAV	CCTTC	2 cut(s)	471, 884
HpyCH4III	ACNGT	1 cut(s)	1137
HpyCH4IV	ACGT	1 cut(s)	809
HpyCH4V	TGCA	9 cut(s)	55, 131, 380, 454, 460, 529, 581, 703, 997
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 487, 496
HpyF3I	CTNAG	6 cut(s)	83, 219, 296, 500, 803, 896
HpySE526I	ACGT	1 cut(s)	809
Hsp92II	CATG	8 cut(s)	167, 232, 241, 358, 488, 885, 1072, 1106
Kzo9I	GATC	4 cut(s)	157, 588, 1036, 1090
LmnI	GCTCC	3 cut(s)	200, 832, 874
Lsp1109I	GCAGC	2 cut(s)	583, 593
LweI	GCATC	4 cut(s)	82, 118, 367, 690
MaeI	CTAG	5 cut(s)	620, 654, 662, 782, 1088
MaeII	ACGT	1 cut(s)	809
MalI	GATC	4 cut(s)	159, 590, 1038, 1092
MboI	GATC	4 cut(s)	157, 588, 1036, 1090
MboII	GAAGA	6 cut(s)	36, 152, 272, 374, 576, 863
MflI	RGATCY	2 cut(s)	157, 1090
MhlI	GDGCHC	1 cut(s)	879
MluCI	AATT	3 cut(s)	387, 400, 430
MluI	ACGCGT	1 cut(s)	1124
MlyI	GAGTC	3 cut(s)	145, 364, 550
MnlI	CCTC	9 cut(s)	47, 80, 460, 502, 584, 748, 757, 893, 1027
Mph1103I	ATGCAT	1 cut(s)	57
MroXI	GAANNNNTTC	2 cut(s)	1136, 1151
MseI	TTAA	1 cut(s)	404
MspA1I	CMGCKG	2 cut(s)	584, 1158
MspI	CCGG	1 cut(s)	1060
MspR9I	CCNGG	3 cut(s)	99, 249, 969
Mva1269I	GAATGC	1 cut(s)	57
MvaI	CCWGG	3 cut(s)	99, 249, 969
MvnI	CGCG	1 cut(s)	1126
MwoI	GCNNNNNNNGC	3 cut(s)	209, 487, 496
NdeII	GATC	4 cut(s)	157, 588, 1036, 1090
NlaIII	CATG	8 cut(s)	167, 232, 241, 358, 488, 885, 1072, 1106
NsiI	ATGCAT	1 cut(s)	57
NspI	RCATGY	1 cut(s)	1106
PagI	TCATGA	3 cut(s)	163, 228, 484
PceI	AGGCCT	1 cut(s)	252
PciI	ACATGT	1 cut(s)	1102
PctI	GAATGC	1 cut(s)	57
PdmI	GAANNNNTTC	2 cut(s)	1136, 1151
PfeI	GAWTC	8 cut(s)	104, 171, 244, 304, 821, 904, 945, 1073
Pfl23II	CGTACG	1 cut(s)	1127
PflMI	CCANNNNNTGG	1 cut(s)	871
PkrI	GCNGC	2 cut(s)	583, 598
PleI	GAGTC	3 cut(s)	145, 364, 550
PpsI	GAGTC	3 cut(s)	145, 364, 550
PscI	ACATGT	1 cut(s)	1102
Psp124BI	GAGCTC	1 cut(s)	879
Psp6I	CCWGG	3 cut(s)	97, 247, 967
PspFI	CCCAGC	1 cut(s)	584
PspGI	CCWGG	3 cut(s)	97, 247, 967
PspLI	CGTACG	1 cut(s)	1127
PspPI	GGNCC	2 cut(s)	413, 469
PsuI	RGATCY	2 cut(s)	157, 1090
PvuII	CAGCTG	2 cut(s)	584, 1158
RsaI	GTAC	4 cut(s)	524, 644, 1120, 1129
RsaNI	GTAC	4 cut(s)	523, 643, 1119, 1128
SacI	GAGCTC	1 cut(s)	879
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	2 cut(s)	582, 597
Sau3AI	GATC	4 cut(s)	157, 588, 1036, 1090
Sau96I	GGNCC	2 cut(s)	413, 469
SchI	GAGTC	3 cut(s)	145, 364, 550
ScrFI	CCNGG	3 cut(s)	99, 249, 969
SduI	GDGCHC	1 cut(s)	879
SfaNI	GCATC	4 cut(s)	82, 118, 367, 690
SinI	GGWCC	2 cut(s)	413, 469
SmlI	CTYRAG	3 cut(s)	494, 513, 748
SmoI	CTYRAG	3 cut(s)	494, 513, 748
SpeI	ACTAGT	1 cut(s)	619
Sse9I	AATT	3 cut(s)	387, 400, 430
SseBI	AGGCCT	1 cut(s)	252
SspMI	CTAG	5 cut(s)	620, 654, 662, 782, 1088
SstI	GAGCTC	1 cut(s)	879
StuI	AGGCCT	1 cut(s)	252
StyD4I	CCNGG	3 cut(s)	97, 247, 967
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	1137
TaiI	ACGT	1 cut(s)	812
TaqI	TCGA	3 cut(s)	591, 773, 1140
TasI	AATT	3 cut(s)	387, 400, 430
TatI	WGTACW	1 cut(s)	1118
TfiI	GAWTC	8 cut(s)	104, 171, 244, 304, 821, 904, 945, 1073
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	1 cut(s)	456
TseI	GCWGC	2 cut(s)	581, 596
TspDTI	ATGAA	4 cut(s)	152, 163, 245, 473
TspGWI	ACGGA	2 cut(s)	327, 1014
TspRI	CASTG	1 cut(s)	456
Van91I	CCANNNNNTGG	1 cut(s)	871
VpaK11BI	GGWCC	2 cut(s)	413, 469
XapI	RAATTY	3 cut(s)	387, 400, 430
XceI	RCATGY	1 cut(s)	1106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	144
XmnI	GAANNNNTTC	2 cut(s)	1136, 1151
XspI	CTAG	5 cut(s)	620, 654, 662, 782, 1088
Zsp2I	ATGCAT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.