Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003866

Physical Location & Seq

Genomic Coordinates Reverse (-)

6028285 .. 6030802

Gene Structure 2518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G18240.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGTATTACCACAACCAGCACCAAGGAAAGAGCATCCTCTCTTCATCGAGAATGCCCATTTCTTCTGAAAGGCATCCGTTCCTCAGAGGAAATGGCACAGGAGATTCTGGACTCATTCTCTCCACTGATGCAAAGCCACGACTAAAATGGACTCCAGATCTTCACGAGAGATTTGTTGAAGCGGTCAACCAGCTTGGAGGAGGAGATAAGGCTACTCCTAAGACAATCATGAAAGTCATGGGCATTCCAGGCCTTACCTTATACCATCTCAAGAGTCATCTTCAGAAATATAGGCTAAGCAAGAATCTTAATGGACAAGCTAACAGCAGTTTAAACAAGACAAGTGTGATGACCATGGTAGAAGAAAACCCCCCTGAAGTAGACGAAAGTCACAGTGAGAGTTTAAGCATTGGACCACAGCCGAGCATGAACTTACCCATAAGTGATGCCCTTCAAATGCAAATAGAGGTCCAGAGACGGCTACACGAGCAACTTGAGGTACAGCGACATTTGCAGCTCAGGATAGAGGCTCAAGGAAAGTACCTGCAATCGATTCTGGAGAAAGCACAAGAGACTCTTGGAAGACAGAACCTAGGTGCAGCTGGGATTGAAGCAACAAAAGCTCAACTCTCAGAATTAGTATCTAAAGTATCAGCAGACTATCCAGACTCTAGTTTCCTCGAACCGAAAGAACTGCAGAATCTACACCATCAACAGATGCAAAAAACGTATCCACCTAACTCCTCCCTGGACAGTTGCCTAACCTCAAGTGAAGGAACTCAGAAAGCCCCAAAGATGCTTGACAACAGACTGGGATTAAGAACATATATTGGAGATTCAACTTCAGAGCAGAAAGAGATAATGGAAGAGCCATTCTTCCATAGAATGGAGCTCACATGGGCAGAAGAAGAAAGCCTCAGAGAGAATCACAACAGGCCATATCTTTCAACAATGGTTAACAACGCAGAACCGAGAATCTCGTCTTCAAGAAGAAGTCCTGGAAGATTGTCAATAGGAGTGGGATTACATGAACACAGAGGAAGGAGTAGCAACAACAGTGAGTATACAGAAGAAAGATTCAACGAGAATAATGAAGATTGCAAGCTTGAAACACACACAAGAACAGCTCTAGATCTTAACACACACGACGAAAACTATGGCACAACGCGTCCTAAACAGTTTGATTTAAATGGTTTCAGCTGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

402

Amino Acids

45.57

Weight (kDa)

6.29

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_CC_LHEQLE	PF14379	70 - 110	1.8e-15	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240
fragaria_vesca	FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990
malus_domestica	MD12G1001900.v1.1 MD14G1001600.v1.1
prunus_persica	Prupe.7G001700_v2.0.a1
pyrus_communis	pycom12g00160 pycom49g00110
rosa_chinensis	RchiOBHm_Chr3g0497321
rosa_laevigata	RLG00000022467
rosa_multiflora	Rmu_sc0001329.1_g000016
rosa_roxburghii	Rroxscaffold_6G00388110
rosa_rugosa	Rorug03G0292200 Rorug03G0292300 Rorug03G0292400 Rorug03G0292500
rosa_samantha	Rh3AG335900 Rh3BG374100 Rh3CG370000 Rh3DG371000
rosa_wichuraiana	Rw3G029540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	552
AccB7I	CCANNNNNTGG	1 cut(s)	886
AccI	GTMKAC	2 cut(s)	381, 1064
AccII	CGCG	1 cut(s)	1168
AciI	CCGC	1 cut(s)	182
AcuI	CTGAAG	3 cut(s)	266, 396, 828
AfaI	GTAC	2 cut(s)	501, 542
AfiI	CCNNNNNNNGG	1 cut(s)	886
AflIII	ACRYGT	1 cut(s)	1166
AgsI	TTSAA	8 cut(s)	179, 455, 611, 840, 948, 987, 1081, 1109
AjnI	CCWGG	3 cut(s)	247, 747, 997
AluBI	AGCT	9 cut(s)	193, 320, 517, 602, 623, 892, 1105, 1127, 1200
AluI	AGCT	9 cut(s)	193, 320, 517, 602, 623, 892, 1105, 1127, 1200
Alw21I	GWGCWC	1 cut(s)	894
Alw26I	GTCTC	2 cut(s)	469, 566
AoxI	GGCC	2 cut(s)	250, 935
ApeKI	GCWGC	2 cut(s)	514, 599
AspA2I	CCTAGG	1 cut(s)	592
AspS9I	GGNCC	2 cut(s)	413, 469
AvaII	GGWCC	2 cut(s)	413, 469
AvrII	CCTAGG	1 cut(s)	592
BanII	GRGCYC	1 cut(s)	894
BauI	CACGAG	2 cut(s)	164, 485
BbsI	GAAGAC	2 cut(s)	589, 975
Bbv12I	GWGCWC	1 cut(s)	894
BbvI	GCAGC	2 cut(s)	526, 611
BccI	CCATC	2 cut(s)	273, 717
BceAI	ACGGC	1 cut(s)	494
BcgI	CGANNNNNNTGC	2 cut(s)	676, 710
BciT130I	CCWGG	3 cut(s)	249, 749, 999
BciVI	GTATCC	1 cut(s)	741
BcoDI	GTCTC	2 cut(s)	469, 566
BfaI	CTAG	3 cut(s)	593, 672, 1130
BfmI	CTRYAG	1 cut(s)	695
BfuAI	ACCTGC	1 cut(s)	552
BfuI	GTATCC	1 cut(s)	741
BglII	AGATCT	2 cut(s)	157, 1132
BisI	GCNGC	2 cut(s)	515, 600
BlnI	CCTAGG	1 cut(s)	592
BlpI	GCTNAGC	1 cut(s)	296
BlsI	GCNGC	2 cut(s)	516, 601
Bme1390I	CCNGG	3 cut(s)	249, 749, 999
Bme18I	GGWCC	2 cut(s)	413, 469
BmgT120I	GGNCC	2 cut(s)	413, 469
BmrFI	CCNGG	3 cut(s)	249, 749, 999
BmrI	ACTGGG	1 cut(s)	821
BmsI	GCATC	6 cut(s)	42, 82, 118, 436, 708, 786
BmuI	ACTGGG	1 cut(s)	821
BoxI	GACNNNNGTC	1 cut(s)	387
BpiI	GAAGAC	2 cut(s)	589, 975
BpmI	CTGGAG	2 cut(s)	138, 578
Bpu10I	CCTNAGC	1 cut(s)	518
Bpu1102I	GCTNAGC	1 cut(s)	296
BpuEI	CTTGAG	4 cut(s)	254, 515, 516, 751
Bsa29I	ATCGAT	1 cut(s)	551
BsaJI	CCNNGG	4 cut(s)	22, 354, 592, 747
Bsc4I	CCNNNNNNNGG	1 cut(s)	886
Bse1I	ACTGG	1 cut(s)	816
BseBI	CCWGG	3 cut(s)	249, 749, 999
BseCI	ATCGAT	1 cut(s)	551
BseDI	CCNNGG	4 cut(s)	22, 354, 592, 747
BseGI	GGATG	2 cut(s)	33, 73
BseLI	CCNNNNNNNGG	1 cut(s)	886
BseMII	CTCAG	5 cut(s)	97, 532, 645, 794, 931
BseNI	ACTGG	1 cut(s)	816
BseRI	GAGGAG	3 cut(s)	213, 216, 733
BseXI	GCAGC	2 cut(s)	526, 611
BseYI	CCCAGC	1 cut(s)	602
BsgI	GTGCAG	1 cut(s)	618
Bsh1236I	CGCG	1 cut(s)	1168
BshFI	GGCC	2 cut(s)	252, 937
BshVI	ATCGAT	1 cut(s)	551
BsiHKAI	GWGCWC	1 cut(s)	894
BslI	CCNNNNNNNGG	1 cut(s)	886
BsmAI	GTCTC	2 cut(s)	469, 566
BsmBI	CGTCTC	1 cut(s)	469
BsmI	GAATGC	2 cut(s)	57, 243
BsnI	GGCC	2 cut(s)	252, 937
Bsp1286I	GDGCHC	1 cut(s)	894
Bsp143I	GATC	2 cut(s)	157, 1132
Bsp1720I	GCTNAGC	1 cut(s)	296
Bsp19I	CCATGG	1 cut(s)	354
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	2 cut(s)	252, 937
BspCNI	CTCAG	5 cut(s)	96, 531, 644, 793, 930
BspDI	ATCGAT	1 cut(s)	551
BspFNI	CGCG	1 cut(s)	1168
BspHI	TCATGA	1 cut(s)	228
BspMAI	CTGCAG	1 cut(s)	699
BspMI	ACCTGC	1 cut(s)	552
BspQI	GCTCTTC	1 cut(s)	861
BsrI	ACTGG	1 cut(s)	816
BssECI	CCNNGG	4 cut(s)	22, 354, 592, 747
BssMI	GATC	2 cut(s)	157, 1132
BssNAI	GTATAC	1 cut(s)	1065
BssSI	CACGAG	2 cut(s)	164, 485
BssT1I	CCWWGG	3 cut(s)	22, 354, 592
Bst1107I	GTATAC	1 cut(s)	1065
Bst2BI	CACGAG	2 cut(s)	164, 485
Bst2UI	CCWGG	3 cut(s)	249, 749, 999
Bst4CI	ACNGT	4 cut(s)	395, 755, 1058, 1179
Bst6I	CTCTTC	2 cut(s)	46, 861
BstC8I	GCNNGC	1 cut(s)	1103
BstDEI	CTNAG	7 cut(s)	83, 219, 296, 518, 631, 780, 917
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	2 cut(s)	33, 73
BstFNI	CGCG	1 cut(s)	1168
BstKTI	GATC	2 cut(s)	160, 1135
BstMAI	GTCTC	2 cut(s)	469, 566
BstMBI	GATC	2 cut(s)	157, 1132
BstMWI	GCNNNNNNNGC	4 cut(s)	249, 487, 511, 620
BstNI	CCWGG	3 cut(s)	249, 749, 999
BstPAI	GACNNNNGTC	1 cut(s)	387
BstSCI	CCNGG	3 cut(s)	247, 747, 997
BstSFI	CTRYAG	1 cut(s)	695
BstUI	CGCG	1 cut(s)	1168
BstV1I	GCAGC	2 cut(s)	526, 611
BstV2I	GAAGAC	2 cut(s)	589, 975
BstX2I	RGATCY	2 cut(s)	157, 1132
BstYI	RGATCY	2 cut(s)	157, 1132
BstZ17I	GTATAC	1 cut(s)	1065
Bsu15I	ATCGAT	1 cut(s)	551
BsuI	GTATCC	1 cut(s)	741
BsuRI	GGCC	2 cut(s)	252, 937
BsuTUI	ATCGAT	1 cut(s)	551
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	33, 73
BtsIMutI	CAGTG	3 cut(s)	123, 400, 1063
BveI	ACCTGC	1 cut(s)	552
Cac8I	GCNNGC	1 cut(s)	1103
CciI	TCATGA	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	413, 469
ClaI	ATCGAT	1 cut(s)	551
CseI	GACGC	1 cut(s)	1157
Csp6I	GTAC	2 cut(s)	500, 541
CspCI	CAANNNNNGTGG	2 cut(s)	999, 1034
CviAII	CATG	6 cut(s)	229, 238, 355, 427, 897, 1028
CviQI	GTAC	2 cut(s)	500, 541
DdeI	CTNAG	7 cut(s)	83, 219, 296, 518, 631, 780, 917
DpnI	GATC	2 cut(s)	159, 1134
DpnII	GATC	2 cut(s)	157, 1132
DraI	TTTAAA	2 cut(s)	333, 1188
Eam1104I	CTCTTC	2 cut(s)	46, 861
EarI	CTCTTC	2 cut(s)	46, 861
Ecl136II	GAGCTC	1 cut(s)	892
Eco130I	CCWWGG	3 cut(s)	22, 354, 592
Eco147I	AGGCCT	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	894
Eco47I	GGWCC	2 cut(s)	413, 469
Eco53kI	GAGCTC	1 cut(s)	892
Eco57I	CTGAAG	3 cut(s)	266, 396, 828
EcoICRI	GAGCTC	1 cut(s)	892
EcoRII	CCWGG	3 cut(s)	247, 747, 997
EcoT14I	CCWWGG	3 cut(s)	22, 354, 592
EcoT38I	GRGCYC	1 cut(s)	894
ErhI	CCWWGG	3 cut(s)	22, 354, 592
Esp3I	CGTCTC	1 cut(s)	469
FaeI	CATG	6 cut(s)	232, 241, 358, 430, 900, 1031
FalI	AAGNNNNNCTT	2 cut(s)	561, 593
FatI	CATG	6 cut(s)	228, 237, 354, 426, 896, 1027
FblI	GTMKAC	2 cut(s)	381, 1064
Fnu4HI	GCNGC	2 cut(s)	515, 600
FokI	GGATG	2 cut(s)	20, 60
FriOI	GRGCYC	1 cut(s)	894
Fsp4HI	GCNGC	2 cut(s)	515, 600
FspBI	CTAG	3 cut(s)	593, 672, 1130
GluI	GCNGC	2 cut(s)	515, 600
GsaI	CCCAGC	1 cut(s)	606
GsuI	CTGGAG	2 cut(s)	138, 578
HaeIII	GGCC	2 cut(s)	252, 937
HgaI	GACGC	1 cut(s)	1157
Hin1II	CATG	6 cut(s)	232, 241, 358, 430, 900, 1031
HincII	GTYRAC	2 cut(s)	187, 958
HindII	GTYRAC	2 cut(s)	187, 958
HindIII	AAGCTT	1 cut(s)	1103
HpaI	GTTAAC	1 cut(s)	958
Hpy166II	GTNNAC	4 cut(s)	187, 382, 958, 1065
Hpy188I	TCNGA	7 cut(s)	67, 86, 285, 634, 783, 847, 920
Hpy8I	GTNNAC	4 cut(s)	187, 382, 958, 1065
Hpy99I	CGWCG	1 cut(s)	1151
HpyAV	CCTTC	3 cut(s)	461, 767, 1035
HpyCH4III	ACNGT	4 cut(s)	395, 755, 1058, 1179
HpyCH4IV	ACGT	1 cut(s)	728
HpyCH4V	TGCA	8 cut(s)	131, 460, 514, 547, 599, 697, 721, 1101
HpyF10VI	GCNNNNNNNGC	4 cut(s)	249, 487, 511, 620
HpyF3I	CTNAG	7 cut(s)	83, 219, 296, 518, 631, 780, 917
HpySE526I	ACGT	1 cut(s)	728
Hsp92II	CATG	6 cut(s)	232, 241, 358, 430, 900, 1031
KspAI	GTTAAC	1 cut(s)	958
Kzo9I	GATC	2 cut(s)	157, 1132
LguI	GCTCTTC	1 cut(s)	861
LmnI	GCTCC	1 cut(s)	889
Lsp1109I	GCAGC	2 cut(s)	526, 611
LweI	GCATC	6 cut(s)	42, 82, 118, 436, 708, 786
MaeI	CTAG	3 cut(s)	593, 672, 1130
MaeII	ACGT	1 cut(s)	728
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	2 cut(s)	159, 1134
MboI	GATC	2 cut(s)	157, 1132
MflI	RGATCY	2 cut(s)	157, 1132
MhlI	GDGCHC	1 cut(s)	894
MluCI	AATT	2 cut(s)	635, 1204
MluI	ACGCGT	1 cut(s)	1166
MlyI	GAGTC	5 cut(s)	105, 145, 283, 568, 662
MseI	TTAA	7 cut(s)	309, 332, 404, 818, 957, 1137, 1187
MspA1I	CMGCKG	2 cut(s)	602, 1200
MspR9I	CCNGG	3 cut(s)	249, 749, 999
MssI	GTTTAAAC	1 cut(s)	333
Mva1269I	GAATGC	2 cut(s)	57, 243
MvaI	CCWGG	3 cut(s)	249, 749, 999
MvnI	CGCG	1 cut(s)	1168
MwoI	GCNNNNNNNGC	4 cut(s)	249, 487, 511, 620
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	2 cut(s)	157, 1132
NlaIII	CATG	6 cut(s)	232, 241, 358, 430, 900, 1031
NmeAIII	GCCGAG	1 cut(s)	447
NmuCI	GTSAC	1 cut(s)	389
PagI	TCATGA	1 cut(s)	228
PceI	AGGCCT	1 cut(s)	252
PciSI	GCTCTTC	1 cut(s)	861
PctI	GAATGC	2 cut(s)	57, 243
PfeI	GAWTC	8 cut(s)	104, 304, 553, 700, 836, 925, 975, 1077
PflMI	CCANNNNNTGG	1 cut(s)	886
PfoI	TCCNGGA	1 cut(s)	997
PkrI	GCNGC	2 cut(s)	516, 601
PleI	GAGTC	5 cut(s)	105, 145, 282, 568, 662
PmeI	GTTTAAAC	1 cut(s)	333
PpsI	GAGTC	5 cut(s)	105, 145, 282, 568, 662
PshAI	GACNNNNGTC	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	894
Psp6I	CCWGG	3 cut(s)	247, 747, 997
PspFI	CCCAGC	1 cut(s)	602
PspGI	CCWGG	3 cut(s)	247, 747, 997
PspPI	GGNCC	2 cut(s)	413, 469
PstI	CTGCAG	1 cut(s)	699
PsuI	RGATCY	2 cut(s)	157, 1132
PvuII	CAGCTG	2 cut(s)	602, 1200
RsaI	GTAC	2 cut(s)	501, 542
RsaNI	GTAC	2 cut(s)	500, 541
SacI	GAGCTC	1 cut(s)	894
SapI	GCTCTTC	1 cut(s)	861
SaqAI	TTAA	7 cut(s)	309, 332, 404, 818, 957, 1137, 1187
SatI	GCNGC	2 cut(s)	515, 600
Sau3AI	GATC	2 cut(s)	157, 1132
Sau96I	GGNCC	2 cut(s)	413, 469
SchI	GAGTC	5 cut(s)	105, 145, 283, 568, 662
ScrFI	CCNGG	3 cut(s)	249, 749, 999
SduI	GDGCHC	1 cut(s)	894
SfaNI	GCATC	6 cut(s)	42, 82, 118, 436, 708, 786
SfcI	CTRYAG	1 cut(s)	695
SinI	GGWCC	2 cut(s)	413, 469
SmiI	ATTTAAAT	1 cut(s)	1188
SmlI	CTYRAG	4 cut(s)	269, 494, 531, 766
SmoI	CTYRAG	4 cut(s)	269, 494, 531, 766
Sse9I	AATT	2 cut(s)	635, 1204
SseBI	AGGCCT	1 cut(s)	252
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	3 cut(s)	593, 672, 1130
SstI	GAGCTC	1 cut(s)	894
StuI	AGGCCT	1 cut(s)	252
StyD4I	CCNGG	3 cut(s)	247, 747, 997
StyI	CCWWGG	3 cut(s)	22, 354, 592
SwaI	ATTTAAAT	1 cut(s)	1188
TaaI	ACNGT	4 cut(s)	395, 755, 1058, 1179
TaiI	ACGT	1 cut(s)	731
TaqI	TCGA	3 cut(s)	47, 551, 681
TasI	AATT	2 cut(s)	635, 1204
TfiI	GAWTC	8 cut(s)	104, 304, 553, 700, 836, 925, 975, 1077
Tru1I	TTAA	7 cut(s)	309, 332, 404, 818, 957, 1137, 1187
Tru9I	TTAA	7 cut(s)	309, 332, 404, 818, 957, 1137, 1187
TscAI	CASTG	3 cut(s)	130, 400, 1063
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	2 cut(s)	514, 599
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	5 cut(s)	33, 245, 443, 1044, 1107
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	3 cut(s)	130, 400, 1063
Van91I	CCANNNNNTGG	1 cut(s)	886
VpaK11BI	GGWCC	2 cut(s)	413, 469
XbaI	TCTAGA	1 cut(s)	1129
XcmI	CCANNNNNNNNNTGG	1 cut(s)	144
XmaJI	CCTAGG	1 cut(s)	592
XmiI	GTMKAC	2 cut(s)	381, 1064
XspI	CTAG	3 cut(s)	593, 672, 1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.