Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003866

Physical Location & Seq

Genomic Coordinates Forward (+)

47156203 .. 47159644

Gene Structure 3442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG371000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGATGTACCATCATCATCACCACCAGCACCAGCACCAACACCAGGCAAAAAACATCCATTCCTCTTCTTCAAGCAGGATGGCCATCCCTCCTGAAAGGCATCTGTTTCTGCAGCCGGAAACTTGCCCTGAAGATTCAGGACTAGTCCTTTCAACTGATGCCAAGCCAAGACTCAAATGGACGCCTGATCTCCACGAGCGCTTCATAGAAGCAGTAAACCAGCTGGGAGGAGCAGAGAAGGCTACTCCAAAAACAGTAATGAAACTTATGGGGATTCCAGGGCTTACATTATACCACCTAAAGAGTCATCTCCAGAAGTATAGGCTCAGCAAGAATCTGCACGTACATGCTAATAGTGGCACCACAAACAAAATTGCTGCAGTGCCAGGAGAAAGAATATCTGAAGTAAATGGAACTCATATGAACAGTATGAACATCGGACCACAGTCAAATAAAGGCTTACATATAAATGAAACACTACAAATGCAAATTGAAGTGCAGAGAAGGCTACATGAGCAGCTTGAGGTACAGCGACACTTACAACTTCGTATCGAAGCTCAAGGAAAATACCTACAGTCGGTGCTGGAGAAAGCCCAGGAGACACTAGGAAGACAGAACTTGGGTACAGTGGGACTTGAAGCTGCCAAAGTTCAACTCTCTGAACTGGTATCCAAAGTCTCCACCCAATGCTTGAACTCTGCATTTACAGAGCTAAAAGAAGTACAGGGATCGTGCCCCCAAAACCAGCCCACCGATTGCTCTGTGGACAGCTGCCTCACCTCCTGTGAAGGATCTAAAAAGGATCAGGAGATACAAAACAATAGCAGGATGGGGCTAAGAGCTTATAATAGCAGCAGGGTACTAATGGAATCGGAAGAGACCATTCTACATCTGAAAGAGAATAACATGTTTGTTTCCGCTCTAAGCAAGAATGCAGACCAAAGAATGTTTCCTTCAGAAGCAAGGTCTGGTGACTTGTCTGTGAGCATCGGACTTGAACGAGAAAAATGGAACCGTAGCAACTGCAACTCCGAGGAAAGATTCAAAGCAAGAAACACAGATGACAGCTTTCTAGAGCATACAAACAACAAGGCAGATTCAGTTAAAGTAGATCAGACTCAGAAAGTTTCTCAAGGATATAGCGTGCCATACTTTGCAGCAAAACTGGACCTAAATTCTCATGATGATATTGATGCTTCTTCAAGTTGCAAACAGTTTGACTTGAATGGTTTTAGCTGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

414

Amino Acids

46.61

Weight (kDa)

7.09

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	57 - 108	2.7e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	155 - 201	2e-24	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240
fragaria_vesca	FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990
malus_domestica	MD12G1001900.v1.1 MD14G1001600.v1.1
prunus_persica	Prupe.7G001700_v2.0.a1
pyrus_communis	pycom12g00160 pycom49g00110
rosa_chinensis	RchiOBHm_Chr3g0497321
rosa_laevigata	RLG00000022467
rosa_multiflora	Rmu_sc0001329.1_g000016
rosa_roxburghii	Rroxscaffold_6G00388110
rosa_rugosa	Rorug03G0292200 Rorug03G0292300 Rorug03G0292400 Rorug03G0292500
rosa_samantha	Rh3AG335900 Rh3BG374100 Rh3CG370000 Rh3DG371000
rosa_wichuraiana	Rw3G029540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	846
AccB1I	GGYRCC	1 cut(s)	359
AccBSI	CCGCTC	1 cut(s)	920
AciI	CCGC	1 cut(s)	918
AclWI	GGATC	3 cut(s)	736, 799, 810
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	1174
AcuI	CTGAAG	3 cut(s)	150, 423, 939
AcyI	GRCGYC	1 cut(s)	182
AfaI	GTAC	6 cut(s)	8, 345, 528, 625, 723, 861
AfeI	AGCGCT	1 cut(s)	200
AfiI	CCNNNNNNNGG	2 cut(s)	43, 577
AflIII	ACRYGT	1 cut(s)	906
AhlI	ACTAGT	1 cut(s)	142
AjnI	CCWGG	4 cut(s)	42, 277, 385, 594
AjuI	GAANNNNNNNTTGG	2 cut(s)	933, 965
Alw26I	GTCTC	3 cut(s)	593, 682, 872
AlwI	GGATC	3 cut(s)	736, 799, 810
Aor51HI	AGCGCT	1 cut(s)	200
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	7 cut(s)	112, 377, 517, 641, 771, 852, 1157
ApoI	RAATTY	1 cut(s)	1174
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	2 cut(s)	440, 1168
AsuHPI	GGTGA	3 cut(s)	11, 769, 983
AvaII	GGWCC	2 cut(s)	440, 1168
BaeGI	GKGCMC	1 cut(s)	737
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	359
BauI	CACGAG	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	616
BbvI	GCAGC	7 cut(s)	124, 364, 529, 628, 758, 864, 1169
BccI	CCATC	4 cut(s)	18, 73, 92, 823
BciT130I	CCWGG	4 cut(s)	44, 279, 387, 596
BciVI	GTATCC	1 cut(s)	679
BcoDI	GTCTC	3 cut(s)	593, 682, 872
BcuI	ACTAGT	1 cut(s)	142
BfaI	CTAG	3 cut(s)	143, 605, 1073
BfmI	CTRYAG	3 cut(s)	110, 378, 572
BfoI	RGCGCY	1 cut(s)	202
BfuI	GTATCC	1 cut(s)	679
BisI	GCNGC	7 cut(s)	113, 378, 518, 642, 772, 853, 1158
BlpI	GCTNAGC	1 cut(s)	326
BlsI	GCNGC	7 cut(s)	114, 379, 519, 643, 773, 854, 1159
Bme1390I	CCNGG	4 cut(s)	44, 279, 387, 596
Bme18I	GGWCC	2 cut(s)	440, 1168
BmgT120I	GGNCC	2 cut(s)	440, 1168
BmiI	GGNNCC	2 cut(s)	361, 1013
BmrFI	CCNGG	4 cut(s)	44, 279, 387, 596
BmsI	GCATC	4 cut(s)	109, 148, 996, 1183
BoxI	GACNNNNGTC	1 cut(s)	445
BpiI	GAAGAC	1 cut(s)	616
BpmI	CTGGAG	2 cut(s)	296, 605
Bpu1102I	GCTNAGC	1 cut(s)	326
BpuEI	CTTGAG	3 cut(s)	542, 543, 1116
BsaAI	YACGTR	1 cut(s)	343
BsaBI	GATNNNNATC	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	182
BsaI	GGTCTC	1 cut(s)	872
BsaJI	CCNNGG	3 cut(s)	278, 594, 1032
BsaXI	ACNNNNNCTCC	2 cut(s)	1013, 1043
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 577
Bse1I	ACTGG	2 cut(s)	669, 1170
Bse8I	GATNNNNATC	1 cut(s)	83
BseBI	CCWGG	4 cut(s)	44, 279, 387, 596
BseDI	CCNNGG	3 cut(s)	278, 594, 1032
BseGI	GGATG	4 cut(s)	54, 84, 84, 834
BseJI	GATNNNNATC	1 cut(s)	83
BseLI	CCNNNNNNNGG	2 cut(s)	43, 577
BseMII	CTCAG	2 cut(s)	340, 1133
BseNI	ACTGG	2 cut(s)	669, 1170
BseRI	GAGGAG	1 cut(s)	243
BseSI	GKGCMC	1 cut(s)	737
BseXI	GCAGC	7 cut(s)	124, 364, 529, 628, 758, 864, 1169
BseYI	CCCAGC	1 cut(s)	223
BsgI	GTGCAG	2 cut(s)	323, 518
BshFI	GGCC	1 cut(s)	83
BshNI	GGYRCC	1 cut(s)	359
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	645
BslI	CCNNNNNNNGG	2 cut(s)	43, 577
BsmAI	GTCTC	3 cut(s)	593, 682, 872
BsmFI	GGGAC	1 cut(s)	645
BsmI	GAATGC	1 cut(s)	937
BsnI	GGCC	1 cut(s)	83
Bso31I	GGTCTC	1 cut(s)	872
Bsp1286I	GDGCHC	1 cut(s)	737
Bsp143I	GATC	5 cut(s)	187, 728, 791, 802, 1111
Bsp1720I	GCTNAGC	1 cut(s)	326
BspACI	CCGC	1 cut(s)	918
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	2 cut(s)	339, 1132
BspHI	TCATGA	1 cut(s)	1180
BspLI	GGNNCC	2 cut(s)	361, 1013
BspMAI	CTGCAG	2 cut(s)	114, 382
BspPI	GGATC	3 cut(s)	736, 799, 810
BspT107I	GGYRCC	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	872
BsrBI	CCGCTC	1 cut(s)	920
BsrI	ACTGG	2 cut(s)	669, 1170
BssECI	CCNNGG	3 cut(s)	278, 594, 1032
BssMI	GATC	5 cut(s)	187, 728, 791, 802, 1111
BssNI	GRCGYC	1 cut(s)	182
BssSI	CACGAG	1 cut(s)	194
Bst2BI	CACGAG	1 cut(s)	194
Bst2UI	CCWGG	4 cut(s)	44, 279, 387, 596
Bst4CI	ACNGT	7 cut(s)	256, 428, 447, 576, 628, 1016, 1215
Bst6I	CTCTTC	2 cut(s)	70, 870
BstACI	GRCGYC	1 cut(s)	182
BstBAI	YACGTR	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	1145
BstDEI	CTNAG	4 cut(s)	326, 836, 923, 1119
BstF5I	GGATG	4 cut(s)	54, 84, 84, 834
BstH2I	RGCGCY	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	5 cut(s)	190, 731, 794, 805, 1114
BstMAI	GTCTC	3 cut(s)	593, 682, 872
BstMBI	GATC	5 cut(s)	187, 728, 791, 802, 1111
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 505, 514
BstNI	CCWGG	4 cut(s)	44, 279, 387, 596
BstNSI	RCATGY	2 cut(s)	350, 910
BstPAI	GACNNNNGTC	1 cut(s)	445
BstSCI	CCNGG	4 cut(s)	42, 277, 385, 594
BstSFI	CTRYAG	3 cut(s)	110, 378, 572
BstSLI	GKGCMC	1 cut(s)	737
BstV1I	GCAGC	7 cut(s)	124, 364, 529, 628, 758, 864, 1169
BstV2I	GAAGAC	1 cut(s)	616
BstX2I	RGATCY	1 cut(s)	791
BstYI	RGATCY	1 cut(s)	791
BsuI	GTATCC	1 cut(s)	679
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	4 cut(s)	54, 84, 84, 834
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	2 cut(s)	387, 633
Cac8I	GCNNGC	1 cut(s)	1145
CciI	TCATGA	1 cut(s)	1180
CfoI	GCGC	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	440, 1168
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	6 cut(s)	7, 344, 527, 624, 722, 860
CviAII	CATG	4 cut(s)	347, 512, 907, 1181
CviQI	GTAC	6 cut(s)	7, 344, 527, 624, 722, 860
DdeI	CTNAG	4 cut(s)	326, 836, 923, 1119
DpnI	GATC	5 cut(s)	189, 730, 793, 804, 1113
DpnII	GATC	5 cut(s)	187, 728, 791, 802, 1111
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	70, 870
EarI	CTCTTC	2 cut(s)	70, 870
Eco31I	GGTCTC	1 cut(s)	872
Eco47I	GGWCC	2 cut(s)	440, 1168
Eco47III	AGCGCT	1 cut(s)	200
Eco57I	CTGAAG	3 cut(s)	150, 423, 939
EcoRII	CCWGG	4 cut(s)	42, 277, 385, 594
FaeI	CATG	4 cut(s)	350, 515, 910, 1184
FaqI	GGGAC	1 cut(s)	645
FatI	CATG	4 cut(s)	346, 511, 906, 1180
FauNDI	CATATG	1 cut(s)	420
Fnu4HI	GCNGC	7 cut(s)	113, 378, 518, 642, 772, 853, 1158
FokI	GGATG	4 cut(s)	41, 71, 91, 841
Fsp4HI	GCNGC	7 cut(s)	113, 378, 518, 642, 772, 853, 1158
FspBI	CTAG	3 cut(s)	143, 605, 1073
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	7 cut(s)	113, 378, 518, 642, 772, 853, 1158
GsaI	CCCAGC	1 cut(s)	227
GsuI	CTGGAG	2 cut(s)	296, 605
HaeII	RGCGCY	1 cut(s)	202
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	116
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	201
Hin1I	GRCGYC	1 cut(s)	182
Hin1II	CATG	4 cut(s)	350, 515, 910, 1184
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HinfI	GANTC	9 cut(s)	134, 171, 274, 304, 334, 869, 1041, 1097, 1117
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	3 cut(s)	11, 769, 983
Hpy166II	GTNNAC	2 cut(s)	217, 766
Hpy188III	TCNNGA	6 cut(s)	92, 138, 313, 806, 1073, 1181
Hpy8I	GTNNAC	2 cut(s)	217, 766
HpyAV	CCTTC	4 cut(s)	232, 498, 782, 963
HpyCH4III	ACNGT	7 cut(s)	256, 428, 447, 576, 628, 1016, 1215
HpyCH4IV	ACGT	1 cut(s)	342
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 505, 514
HpyF3I	CTNAG	4 cut(s)	326, 836, 923, 1119
HpySE526I	ACGT	1 cut(s)	342
Hsp92I	GRCGYC	1 cut(s)	182
Hsp92II	CATG	4 cut(s)	350, 515, 910, 1184
HspAI	GCGC	1 cut(s)	199
Kzo9I	GATC	5 cut(s)	187, 728, 791, 802, 1111
LmnI	GCTCC	2 cut(s)	230, 1239
Lsp1109I	GCAGC	7 cut(s)	124, 364, 529, 628, 758, 864, 1169
LweI	GCATC	4 cut(s)	109, 148, 996, 1183
MaeI	CTAG	3 cut(s)	143, 605, 1073
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	971
MalI	GATC	5 cut(s)	189, 730, 793, 804, 1113
MbiI	CCGCTC	1 cut(s)	920
MboI	GATC	5 cut(s)	187, 728, 791, 802, 1111
MboII	GAAGA	6 cut(s)	57, 60, 143, 621, 887, 1191
MflI	RGATCY	1 cut(s)	791
MhlI	GDGCHC	1 cut(s)	737
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	3 cut(s)	372, 489, 1174
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	3 cut(s)	165, 313, 1111
MnlI	CCTC	7 cut(s)	73, 99, 221, 517, 785, 790, 1027
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	1 cut(s)	1104
MslI	CAYNNNNRTG	2 cut(s)	345, 468
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	2 cut(s)	223, 771
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	4 cut(s)	44, 279, 387, 596
Mva1269I	GAATGC	1 cut(s)	937
MvaI	CCWGG	4 cut(s)	44, 279, 387, 596
MwoI	GCNNNNNNNGC	3 cut(s)	239, 505, 514
NdeI	CATATG	1 cut(s)	420
NdeII	GATC	5 cut(s)	187, 728, 791, 802, 1111
NlaIII	CATG	4 cut(s)	350, 515, 910, 1184
NlaIV	GGNNCC	2 cut(s)	361, 1013
NmuCI	GTSAC	1 cut(s)	971
NspI	RCATGY	2 cut(s)	350, 910
PagI	TCATGA	1 cut(s)	1180
PciI	ACATGT	1 cut(s)	906
PctI	GAATGC	1 cut(s)	937
PfeI	GAWTC	6 cut(s)	134, 274, 334, 869, 1041, 1097
PkrI	GCNGC	7 cut(s)	114, 379, 519, 643, 773, 854, 1159
PleI	GAGTC	3 cut(s)	165, 312, 1111
PpsI	GAGTC	3 cut(s)	165, 312, 1111
Ppu21I	YACGTR	1 cut(s)	343
PscI	ACATGT	1 cut(s)	906
PshAI	GACNNNNGTC	1 cut(s)	445
PsiI	TTATAA	1 cut(s)	846
Psp6I	CCWGG	4 cut(s)	42, 277, 385, 594
PspFI	CCCAGC	1 cut(s)	223
PspGI	CCWGG	4 cut(s)	42, 277, 385, 594
PspN4I	GGNNCC	2 cut(s)	361, 1013
PspPI	GGNCC	2 cut(s)	440, 1168
PstI	CTGCAG	2 cut(s)	114, 382
PsuI	RGATCY	1 cut(s)	791
PvuII	CAGCTG	2 cut(s)	223, 771
RsaI	GTAC	6 cut(s)	8, 345, 528, 625, 723, 861
RsaNI	GTAC	6 cut(s)	7, 344, 527, 624, 722, 860
RseI	CAYNNNNRTG	2 cut(s)	345, 468
SaqAI	TTAA	1 cut(s)	1104
SatI	GCNGC	7 cut(s)	113, 378, 518, 642, 772, 853, 1158
Sau3AI	GATC	5 cut(s)	187, 728, 791, 802, 1111
Sau96I	GGNCC	2 cut(s)	440, 1168
SchI	GAGTC	3 cut(s)	165, 313, 1111
ScrFI	CCNGG	4 cut(s)	44, 279, 387, 596
SduI	GDGCHC	1 cut(s)	737
SfaNI	GCATC	4 cut(s)	109, 148, 996, 1183
SfcI	CTRYAG	3 cut(s)	110, 378, 572
SinI	GGWCC	2 cut(s)	440, 1168
SmiMI	CAYNNNNRTG	2 cut(s)	345, 468
SmlI	CTYRAG	3 cut(s)	521, 558, 1131
SmoI	CTYRAG	3 cut(s)	521, 558, 1131
SpeI	ACTAGT	1 cut(s)	142
Sse9I	AATT	3 cut(s)	372, 489, 1174
SsiI	CCGC	1 cut(s)	918
SspMI	CTAG	3 cut(s)	143, 605, 1073
StyD4I	CCNGG	4 cut(s)	42, 277, 385, 594
TaaI	ACNGT	7 cut(s)	256, 428, 447, 576, 628, 1016, 1215
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	1 cut(s)	552
TasI	AATT	3 cut(s)	372, 489, 1174
TatI	WGTACW	1 cut(s)	721
TfiI	GAWTC	6 cut(s)	134, 274, 334, 869, 1041, 1097
Tru1I	TTAA	1 cut(s)	1104
Tru9I	TTAA	1 cut(s)	1104
TscAI	CASTG	2 cut(s)	387, 633
TseFI	GTSAC	1 cut(s)	971
TseI	GCWGC	7 cut(s)	112, 377, 517, 641, 771, 852, 1157
Tsp45I	GTSAC	1 cut(s)	971
TspDTI	ATGAA	5 cut(s)	193, 275, 437, 446, 486
TspRI	CASTG	2 cut(s)	387, 633
VpaK11BI	GGWCC	2 cut(s)	440, 1168
XapI	RAATTY	1 cut(s)	1174
XbaI	TCTAGA	1 cut(s)	1072
XceI	RCATGY	2 cut(s)	350, 910
XcmI	CCANNNNNNNNNTGG	1 cut(s)	174
XspI	CTAG	3 cut(s)	143, 605, 1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.