Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003866

Physical Location & Seq

Genomic Coordinates Forward (+)

19784182 .. 19788207

Gene Structure 4026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g27990.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGATGTACCATCATCATCACCACCTGCATCAGCACCAGCACCAGCACCAGGCCAAGAACATCCATTCCTCTTCTTCAAACAGAATGGCCATTCCTCCTGAAACGCATCGGCTTCTGCAGCCGGAAAGTTGCCCTGAAGATTCAGGACTCGTCCTCTCAACTGATGCCAAGCCAAGACTTAAATGGACTCCAGATCTCCACGAGCGCTTCATAGAAGCAGTAAACCAGCTGGGAGGAGCAGACAAGGCTACTCCAAAAACAGTAATGAAACTTATGGGGATTCCAGGGCTTACATTATACCACTTAAAGAGTCATCTCCAGAAATATAGGCTTAGCAAGAATCTGCATGTACATGCTAATAGTGGTGGCACAACCAAAATTGTTGCAGTTGCAGTGCCAGGAGAAAGAATATCTGAAGTAAATGGAACTCATATGAACAATATGAGCATCGGACCACAGTCAAATAAAGGCATACATATAAATGAAACACTACAAATGCAAATTGAAGTGCAGAGAAGGCTACATCAGCAGCTTGAGGTACAACGACACTTACAACTTCGTATCGAAGCTCAAGGAAAGTACCTACAGTCGGTCTTGGAGAAAGCCCAAGAGACACTAGGAAGACAGAATTTAGGTACAGTGGGACTTGAAGCTGCCAAAGTTCAACTCTCTGAACTGGTATCCAAAGTGTCCACCCAATGCTTGAACTCTGCATTTACAGAGATGAAAGAAGTACAGGGATCATGCCCCCAAAACCCCCCCACCGATTGCTCTATGGAAAGCTGCCTCACCTCCAGTGAAGGTTCTAAAAAGGATCAGGAGATACAAAACAATAGCAGGATGGGGCTAAGAGCTTATAATAGCAGCAGGGTACTATTGGAATCAGAAAAGACCATGCTACATCTGAAAGAGAATAGCATGTTTGTTTCCACACTAACCAAGAATGCAGACCAAAGAATGTTTCCCTCAGAACCAAGGTCTGGTGACTTTTCTATGAGCATTGGGCTTGAACGAGAAATATTGAACGGTAGCCACTGCAACTCCGAGGAAAGATTCAAAGCAAGGAACACAATTGACAGCTTTCTCGACAATAAAAACAATAGGGCAGATTCAGTTAAAGTTGATCAAAGTCGGAAAGTTTCTCAAGGATATAGCGGGCCATACTTTGCAGCAAAACTAGACCTAAATTCTCATGATGATACTGATGCTTCTTCAAGTTGCAAACAGTTTGACTTGAACGATTTTAGCTGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

419

Amino Acids

46.95

Weight (kDa)

8.11

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	59 - 110	1.6e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	158 - 205	2.8e-23	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240
fragaria_vesca	FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990
malus_domestica	MD12G1001900.v1.1 MD14G1001600.v1.1
prunus_persica	Prupe.7G001700_v2.0.a1
pyrus_communis	pycom12g00160 pycom49g00110
rosa_chinensis	RchiOBHm_Chr3g0497321
rosa_laevigata	RLG00000022467
rosa_multiflora	Rmu_sc0001329.1_g000016
rosa_roxburghii	Rroxscaffold_6G00388110
rosa_rugosa	Rorug03G0292200 Rorug03G0292300 Rorug03G0292400 Rorug03G0292500
rosa_samantha	Rh3AG335900 Rh3BG374100 Rh3CG370000 Rh3DG371000
rosa_wichuraiana	Rw3G029540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	858
AarI	CACCTGC	1 cut(s)	33
Acc36I	ACCTGC	1 cut(s)	33
AccB7I	CCANNNNNTGG	1 cut(s)	980
AciI	CCGC	1 cut(s)	1155
AclWI	GGATC	2 cut(s)	748, 822
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	2 cut(s)	628, 1186
AcuI	CTGAAG	2 cut(s)	156, 435
AfaI	GTAC	7 cut(s)	8, 351, 540, 581, 637, 735, 873
AfeI	AGCGCT	1 cut(s)	206
AfiI	CCNNNNNNNGG	3 cut(s)	49, 589, 980
AjnI	CCWGG	3 cut(s)	48, 283, 397
AjuI	GAANNNNNNNTTGG	2 cut(s)	945, 977
AloI	GAACNNNNNNTCC	2 cut(s)	50, 82
AluBI	AGCT	9 cut(s)	229, 532, 569, 653, 783, 854, 1080, 1248, 1254
AluI	AGCT	9 cut(s)	229, 532, 569, 653, 783, 854, 1080, 1248, 1254
Alw26I	GTCTC	1 cut(s)	605
AlwI	GGATC	2 cut(s)	748, 822
Aor51HI	AGCGCT	1 cut(s)	206
AoxI	GGCC	3 cut(s)	51, 87, 1157
ApeKI	GCWGC	6 cut(s)	118, 529, 653, 783, 864, 1169
ApoI	RAATTY	2 cut(s)	628, 1186
AspLEI	GCGC	1 cut(s)	207
AspS9I	GGNCC	2 cut(s)	452, 1157
AsuHPI	GGTGA	3 cut(s)	11, 781, 995
AvaII	GGWCC	1 cut(s)	452
BalI	TGGCCA	1 cut(s)	89
BauI	CACGAG	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	628
BbvI	GCAGC	6 cut(s)	130, 541, 640, 770, 876, 1181
BccI	CCATC	2 cut(s)	18, 835
BciT130I	CCWGG	3 cut(s)	50, 285, 399
BciVI	GTATCC	1 cut(s)	691
BclI	TGATCA	1 cut(s)	1123
BcoDI	GTCTC	1 cut(s)	605
BfaI	CTAG	2 cut(s)	617, 1178
BfmI	CTRYAG	2 cut(s)	116, 584
BfoI	RGCGCY	1 cut(s)	208
BfuAI	ACCTGC	1 cut(s)	33
BfuI	GTATCC	1 cut(s)	691
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	6 cut(s)	119, 530, 654, 784, 865, 1170
BlpI	GCTNAGC	1 cut(s)	332
BlsI	GCNGC	6 cut(s)	120, 531, 655, 785, 866, 1171
Bme1390I	CCNGG	3 cut(s)	50, 285, 399
Bme18I	GGWCC	1 cut(s)	452
BmgT120I	GGNCC	2 cut(s)	452, 1157
BmrFI	CCNGG	3 cut(s)	50, 285, 399
BmsI	GCATC	5 cut(s)	37, 115, 154, 456, 1195
BoxI	GACNNNNGTC	1 cut(s)	457
BpiI	GAAGAC	1 cut(s)	628
BpmI	CTGGAG	3 cut(s)	174, 302, 778
Bpu1102I	GCTNAGC	1 cut(s)	332
BpuEI	CTTGAG	3 cut(s)	554, 555, 1128
BsaJI	CCNNGG	3 cut(s)	284, 974, 1044
BsaXI	ACNNNNNCTCC	2 cut(s)	1025, 1055
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 589, 980
Bse1I	ACTGG	2 cut(s)	681, 795
BseBI	CCWGG	3 cut(s)	50, 285, 399
BseDI	CCNNGG	3 cut(s)	284, 974, 1044
BseGI	GGATG	2 cut(s)	60, 846
BseLI	CCNNNNNNNGG	3 cut(s)	49, 589, 980
BseMII	CTCAG	1 cut(s)	981
BseNI	ACTGG	2 cut(s)	681, 795
BseRI	GAGGAG	1 cut(s)	249
BseXI	GCAGC	6 cut(s)	130, 541, 640, 770, 876, 1181
BseYI	CCCAGC	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	530
BshFI	GGCC	3 cut(s)	53, 89, 1159
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	657
BslI	CCNNNNNNNGG	3 cut(s)	49, 589, 980
BsmAI	GTCTC	1 cut(s)	605
BsmFI	GGGAC	1 cut(s)	657
BsmI	GAATGC	1 cut(s)	949
BsnI	GGCC	3 cut(s)	53, 89, 1159
Bsp1407I	TGTACA	1 cut(s)	349
Bsp143I	GATC	4 cut(s)	193, 740, 814, 1123
Bsp1720I	GCTNAGC	1 cut(s)	332
BspACI	CCGC	1 cut(s)	1155
BspANI	GGCC	3 cut(s)	53, 89, 1159
BspCNI	CTCAG	1 cut(s)	980
BspHI	TCATGA	1 cut(s)	1192
BspMAI	CTGCAG	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	33
BspPI	GGATC	2 cut(s)	748, 822
BsrGI	TGTACA	1 cut(s)	349
BsrI	ACTGG	2 cut(s)	681, 795
BssECI	CCNNGG	3 cut(s)	284, 974, 1044
BssMI	GATC	4 cut(s)	193, 740, 814, 1123
BssSI	CACGAG	1 cut(s)	200
BssT1I	CCWWGG	1 cut(s)	974
Bst2BI	CACGAG	1 cut(s)	200
Bst2UI	CCWGG	3 cut(s)	50, 285, 399
Bst4CI	ACNGT	6 cut(s)	262, 459, 588, 640, 1028, 1227
Bst6I	CTCTTC	1 cut(s)	76
BstAUI	TGTACA	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	1157
BstDEI	CTNAG	3 cut(s)	332, 848, 967
BstF5I	GGATG	2 cut(s)	60, 846
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	4 cut(s)	196, 743, 817, 1126
BstMAI	GTCTC	1 cut(s)	605
BstMBI	GATC	4 cut(s)	193, 740, 814, 1123
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 245, 517, 526
BstNI	CCWGG	3 cut(s)	50, 285, 399
BstNSI	RCATGY	3 cut(s)	350, 356, 922
BstPAI	GACNNNNGTC	1 cut(s)	457
BstSCI	CCNGG	3 cut(s)	48, 283, 397
BstSFI	CTRYAG	2 cut(s)	116, 584
BstV1I	GCAGC	6 cut(s)	130, 541, 640, 770, 876, 1181
BstV2I	GAAGAC	1 cut(s)	628
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuI	GTATCC	1 cut(s)	691
BsuRI	GGCC	3 cut(s)	53, 89, 1159
BtsCI	GGATG	2 cut(s)	60, 846
BtsI	GCAGTG	2 cut(s)	399, 1033
BtsIMutI	CAGTG	4 cut(s)	399, 645, 802, 1033
BveI	ACCTGC	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	1157
CciI	TCATGA	1 cut(s)	1192
CfoI	GCGC	1 cut(s)	207
Cfr13I	GGNCC	2 cut(s)	452, 1157
Csp6I	GTAC	7 cut(s)	7, 350, 539, 580, 636, 734, 872
CviAII	CATG	6 cut(s)	347, 353, 744, 895, 919, 1193
CviQI	GTAC	7 cut(s)	7, 350, 539, 580, 636, 734, 872
DdeI	CTNAG	3 cut(s)	332, 848, 967
DpnI	GATC	4 cut(s)	195, 742, 816, 1125
DpnII	GATC	4 cut(s)	193, 740, 814, 1123
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	974
Eco47I	GGWCC	1 cut(s)	452
Eco47III	AGCGCT	1 cut(s)	206
Eco57I	CTGAAG	2 cut(s)	156, 435
EcoRII	CCWGG	3 cut(s)	48, 283, 397
EcoT14I	CCWWGG	1 cut(s)	974
ErhI	CCWWGG	1 cut(s)	974
FaeI	CATG	6 cut(s)	350, 356, 747, 898, 922, 1196
FaqI	GGGAC	1 cut(s)	657
FatI	CATG	6 cut(s)	346, 352, 743, 894, 918, 1192
FauI	CCCGC	1 cut(s)	1148
FauNDI	CATATG	1 cut(s)	432
FbaI	TGATCA	1 cut(s)	1123
Fnu4HI	GCNGC	6 cut(s)	119, 530, 654, 784, 865, 1170
FokI	GGATG	2 cut(s)	47, 853
Fsp4HI	GCNGC	6 cut(s)	119, 530, 654, 784, 865, 1170
FspBI	CTAG	2 cut(s)	617, 1178
GlaI	GCGC	1 cut(s)	206
GluI	GCNGC	6 cut(s)	119, 530, 654, 784, 865, 1170
GsaI	CCCAGC	1 cut(s)	233
GsuI	CTGGAG	3 cut(s)	174, 302, 778
HaeII	RGCGCY	1 cut(s)	208
HaeIII	GGCC	3 cut(s)	53, 89, 1159
HapII	CCGG	1 cut(s)	122
HhaI	GCGC	1 cut(s)	207
Hin1II	CATG	6 cut(s)	350, 356, 747, 898, 922, 1196
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HinfI	GANTC	9 cut(s)	140, 147, 187, 280, 310, 340, 881, 1053, 1109
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	3 cut(s)	11, 781, 995
Hpy166II	GTNNAC	2 cut(s)	223, 693
Hpy188I	TCNGA	8 cut(s)	415, 452, 673, 886, 906, 970, 1045, 1134
Hpy188III	TCNNGA	7 cut(s)	98, 144, 191, 319, 818, 1085, 1193
Hpy8I	GTNNAC	2 cut(s)	223, 693
HpyAV	CCTTC	2 cut(s)	510, 794
HpyCH4III	ACNGT	6 cut(s)	262, 459, 588, 640, 1028, 1227
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 245, 517, 526
HpyF3I	CTNAG	3 cut(s)	332, 848, 967
Hsp92II	CATG	6 cut(s)	350, 356, 747, 898, 922, 1196
HspAI	GCGC	1 cut(s)	205
Ksp22I	TGATCA	1 cut(s)	1123
Kzo9I	GATC	4 cut(s)	193, 740, 814, 1123
LmnI	GCTCC	2 cut(s)	236, 1251
Lsp1109I	GCAGC	6 cut(s)	130, 541, 640, 770, 876, 1181
LweI	GCATC	5 cut(s)	37, 115, 154, 456, 1195
MaeI	CTAG	2 cut(s)	617, 1178
MaeIII	GTNAC	1 cut(s)	983
MalI	GATC	4 cut(s)	195, 742, 816, 1125
MboI	GATC	4 cut(s)	193, 740, 814, 1123
MboII	GAAGA	5 cut(s)	63, 66, 149, 633, 1203
MfeI	CAATTG	1 cut(s)	1071
MflI	RGATCY	1 cut(s)	193
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	5 cut(s)	378, 501, 628, 1071, 1186
MluNI	TGGCCA	1 cut(s)	89
MlyI	GAGTC	3 cut(s)	141, 181, 319
MmeI	TCCRAC	1 cut(s)	1112
MnlI	CCTC	9 cut(s)	79, 105, 164, 227, 529, 797, 802, 976, 1039
Mox20I	TGGCCA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	3 cut(s)	180, 305, 1116
MslI	CAYNNNNRTG	2 cut(s)	351, 480
Msp20I	TGGCCA	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	229
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	3 cut(s)	50, 285, 399
MunI	CAATTG	1 cut(s)	1071
Mva1269I	GAATGC	1 cut(s)	949
MvaI	CCWGG	3 cut(s)	50, 285, 399
MwoI	GCNNNNNNNGC	4 cut(s)	118, 245, 517, 526
NdeI	CATATG	1 cut(s)	432
NdeII	GATC	4 cut(s)	193, 740, 814, 1123
NlaIII	CATG	6 cut(s)	350, 356, 747, 898, 922, 1196
NmuCI	GTSAC	1 cut(s)	983
NspI	RCATGY	3 cut(s)	350, 356, 922
PagI	TCATGA	1 cut(s)	1192
PaqCI	CACCTGC	1 cut(s)	33
PctI	GAATGC	1 cut(s)	949
PfeI	GAWTC	6 cut(s)	140, 280, 340, 881, 1053, 1109
PflMI	CCANNNNNTGG	1 cut(s)	980
PkrI	GCNGC	6 cut(s)	120, 531, 655, 785, 866, 1171
PleI	GAGTC	3 cut(s)	141, 181, 318
PpsI	GAGTC	3 cut(s)	141, 181, 318
PshAI	GACNNNNGTC	1 cut(s)	457
PsiI	TTATAA	1 cut(s)	858
Psp6I	CCWGG	3 cut(s)	48, 283, 397
PspFI	CCCAGC	1 cut(s)	229
PspGI	CCWGG	3 cut(s)	48, 283, 397
PspPI	GGNCC	2 cut(s)	452, 1157
PstI	CTGCAG	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	193
PvuII	CAGCTG	1 cut(s)	229
RsaI	GTAC	7 cut(s)	8, 351, 540, 581, 637, 735, 873
RsaNI	GTAC	7 cut(s)	7, 350, 539, 580, 636, 734, 872
RseI	CAYNNNNRTG	2 cut(s)	351, 480
SaqAI	TTAA	3 cut(s)	180, 305, 1116
SatI	GCNGC	6 cut(s)	119, 530, 654, 784, 865, 1170
Sau3AI	GATC	4 cut(s)	193, 740, 814, 1123
Sau96I	GGNCC	2 cut(s)	452, 1157
SchI	GAGTC	3 cut(s)	141, 181, 319
ScrFI	CCNGG	3 cut(s)	50, 285, 399
SfaNI	GCATC	5 cut(s)	37, 115, 154, 456, 1195
SfcI	CTRYAG	2 cut(s)	116, 584
SinI	GGWCC	1 cut(s)	452
SmiMI	CAYNNNNRTG	2 cut(s)	351, 480
SmlI	CTYRAG	3 cut(s)	533, 570, 1143
SmoI	CTYRAG	3 cut(s)	533, 570, 1143
Sse9I	AATT	5 cut(s)	378, 501, 628, 1071, 1186
SsiI	CCGC	1 cut(s)	1155
SspI	AATATT	1 cut(s)	1020
SspMI	CTAG	2 cut(s)	617, 1178
StyD4I	CCNGG	3 cut(s)	48, 283, 397
StyI	CCWWGG	1 cut(s)	974
TaaI	ACNGT	6 cut(s)	262, 459, 588, 640, 1028, 1227
TaqI	TCGA	2 cut(s)	564, 1086
TaqII	GACCGA	1 cut(s)	580
TasI	AATT	5 cut(s)	378, 501, 628, 1071, 1186
TatI	WGTACW	2 cut(s)	349, 733
TfiI	GAWTC	6 cut(s)	140, 280, 340, 881, 1053, 1109
Tru1I	TTAA	3 cut(s)	180, 305, 1116
Tru9I	TTAA	3 cut(s)	180, 305, 1116
TscAI	CASTG	4 cut(s)	399, 645, 802, 1040
TseFI	GTSAC	1 cut(s)	983
TseI	GCWGC	6 cut(s)	118, 529, 653, 783, 864, 1169
Tsp45I	GTSAC	1 cut(s)	983
TspDTI	ATGAA	5 cut(s)	199, 281, 449, 498, 740
TspRI	CASTG	4 cut(s)	399, 645, 802, 1040
Van91I	CCANNNNNTGG	1 cut(s)	980
VpaK11BI	GGWCC	1 cut(s)	452
XapI	RAATTY	2 cut(s)	628, 1186
XceI	RCATGY	3 cut(s)	350, 356, 922
XcmI	CCANNNNNNNNNTGG	1 cut(s)	180
XspI	CTAG	2 cut(s)	617, 1178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.