Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003866

Physical Location & Seq

Genomic Coordinates Reverse (-)

746086 .. 748720

Gene Structure 2635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00388110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGATGTACCATCATCATCACCACCAGCACCAGCACCAGCACCAACACCAGGCAAAGAACATCCATTCCTCTTCTTCAAGCAGGATGGCCATCCCTCCTGAAAGGCATCTGTTTCTGCAGCCGGAAACTTGCCCTGAAGATTCAGGACTAGTCCTTTCAACTGATGCCAAGCCAAGACTCAAATGGACGCCTGATCTCCACGAGCGCTTCATAGAAGCAGTAAACCAGCTGGGAGGAGCAGAGAAGGCTACTCCAAAAACAGTAATGAAACTTATGGGGATTCCAGGGCTTACATTATACCACCTAAAGAGTCATCTCCAGAAGTATAGGCTCAGCAAGAATCTGCACGTACATGCTAATAGTGGCACCACAAACAAAATTGGTGCAGTTGCAGCTGCAGTCCCAGGAGAAAGAATATCTGAAGTAAATGGAACTCATATGAACAGTATGAACATCGGACCACAGTCAAATAAAGGCTTACATATAAATGAAACACTACAAATGCAAATTGAAGTGCAGAGAAGGCTACATGAGCAGCTTGAGGTACAGCGACACTTACAACTTCGTATCGAAGCTCAAGGAAAATACCTACAGTCGGTGCTGGAGAAAGCCCAGGAGACACTAGGAAGACAGAACTTAGGTACAGTGGGACTTGAAGCTGCCAAAGTTCAACTCTCTGAACTGGTATCCAAAGTCTCCACCCAATGCTTGAACTCTGCATTTACAGAGCTAAAAGAAGTACAGGGATCGTGCCCCCAAAACCAGCCCACCGATTGCTCTGTGGACAGCTGCCTCACCTCCTGTGAAGGATCTAAAAAGGAACAGGAGATACAAACCAATAGCAGGATGGGGCTAAGAGCTTATAATAGCAGCAGGGTACTAATGGAATCGGAAGAGACCATTCTACATCTGAAAGAGAATAACATGTTTGTTTCCGCTCTAACCAATAATGCAGACCAAAGAATGTTTCCTTCAGAAGCAAGGTCTGGTGACTTGTCTATGAGCATCGGACTTGAACGCGAAAATGGAACCGTAGCAACTGCAACTCCGAGGAAAGATTCAAAGCAAGAAACACAGATGACAGCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

363

Amino Acids

40.57

Weight (kDa)

7.77

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	59 - 110	2.2e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	161 - 207	1.7e-24	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240
fragaria_vesca	FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990
malus_domestica	MD12G1001900.v1.1 MD14G1001600.v1.1
prunus_persica	Prupe.7G001700_v2.0.a1
pyrus_communis	pycom12g00160 pycom49g00110
rosa_chinensis	RchiOBHm_Chr3g0497321
rosa_laevigata	RLG00000022467
rosa_multiflora	Rmu_sc0001329.1_g000016
rosa_roxburghii	Rroxscaffold_6G00388110
rosa_rugosa	Rorug03G0292200 Rorug03G0292300 Rorug03G0292400 Rorug03G0292500
rosa_samantha	Rh3AG335900 Rh3BG374100 Rh3CG370000 Rh3DG371000
rosa_wichuraiana	Rw3G029540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	864
AccB1I	GGYRCC	1 cut(s)	365
AccBSI	CCGCTC	1 cut(s)	938
AccII	CGCG	1 cut(s)	1020
AciI	CCGC	1 cut(s)	936
AclWI	GGATC	2 cut(s)	754, 817
AcoI	YGGCCR	1 cut(s)	87
AcuI	CTGAAG	3 cut(s)	156, 441, 957
AcyI	GRCGYC	1 cut(s)	188
AfaI	GTAC	6 cut(s)	8, 351, 546, 643, 741, 879
AfeI	AGCGCT	1 cut(s)	206
AfiI	CCNNNNNNNGG	3 cut(s)	49, 595, 843
AflIII	ACRYGT	1 cut(s)	924
AgsI	TTSAA	8 cut(s)	78, 159, 512, 656, 671, 712, 1016, 1062
AhlI	ACTAGT	1 cut(s)	148
AjnI	CCWGG	4 cut(s)	48, 283, 403, 612
AjuI	GAANNNNNNNTTGG	2 cut(s)	951, 983
AloI	GAACNNNNNNTCC	2 cut(s)	50, 82
AluBI	AGCT	9 cut(s)	229, 395, 538, 575, 659, 730, 789, 860, 1085
AluI	AGCT	9 cut(s)	229, 395, 538, 575, 659, 730, 789, 860, 1085
Alw26I	GTCTC	3 cut(s)	611, 700, 890
AlwI	GGATC	2 cut(s)	754, 817
Aor51HI	AGCGCT	1 cut(s)	206
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	7 cut(s)	118, 392, 395, 535, 659, 789, 870
AspLEI	GCGC	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	458
AsuHPI	GGTGA	3 cut(s)	11, 787, 1001
AvaII	GGWCC	1 cut(s)	458
BaeGI	GKGCMC	1 cut(s)	755
BalI	TGGCCA	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	365
BauI	CACGAG	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	634
BbvI	GCAGC	7 cut(s)	130, 382, 404, 547, 646, 776, 882
BccI	CCATC	4 cut(s)	18, 79, 98, 841
BciT130I	CCWGG	4 cut(s)	50, 285, 405, 614
BciVI	GTATCC	1 cut(s)	697
BcoDI	GTCTC	3 cut(s)	611, 700, 890
BcuI	ACTAGT	1 cut(s)	148
BfaI	CTAG	3 cut(s)	149, 623, 1090
BfmI	CTRYAG	3 cut(s)	116, 396, 590
BfoI	RGCGCY	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	697
BisI	GCNGC	7 cut(s)	119, 393, 396, 536, 660, 790, 871
BlpI	GCTNAGC	1 cut(s)	332
BlsI	GCNGC	7 cut(s)	120, 394, 397, 537, 661, 791, 872
Bme1390I	CCNGG	4 cut(s)	50, 285, 405, 614
Bme18I	GGWCC	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	458
BmiI	GGNNCC	2 cut(s)	367, 1030
BmrFI	CCNGG	4 cut(s)	50, 285, 405, 614
BmsI	GCATC	3 cut(s)	115, 154, 1014
BoxI	GACNNNNGTC	1 cut(s)	463
BpiI	GAAGAC	1 cut(s)	634
BpmI	CTGGAG	2 cut(s)	302, 623
Bpu1102I	GCTNAGC	1 cut(s)	332
BpuEI	CTTGAG	2 cut(s)	560, 561
BsaAI	YACGTR	1 cut(s)	349
BsaBI	GATNNNNATC	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	890
BsaJI	CCNNGG	4 cut(s)	284, 403, 612, 1049
BsaXI	ACNNNNNCTCC	2 cut(s)	1030, 1060
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 595, 843
Bse1I	ACTGG	1 cut(s)	687
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	4 cut(s)	50, 285, 405, 614
BseDI	CCNNGG	4 cut(s)	284, 403, 612, 1049
BseGI	GGATG	4 cut(s)	60, 90, 90, 852
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	3 cut(s)	49, 595, 843
BseMII	CTCAG	1 cut(s)	346
BseNI	ACTGG	1 cut(s)	687
BseRI	GAGGAG	1 cut(s)	249
BseSI	GKGCMC	1 cut(s)	755
BseXI	GCAGC	7 cut(s)	130, 382, 404, 547, 646, 776, 882
BseYI	CCCAGC	1 cut(s)	229
BsgI	GTGCAG	3 cut(s)	329, 405, 536
Bsh1236I	CGCG	1 cut(s)	1020
BshFI	GGCC	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	2 cut(s)	386, 663
BslI	CCNNNNNNNGG	3 cut(s)	49, 595, 843
BsmAI	GTCTC	3 cut(s)	611, 700, 890
BsmFI	GGGAC	2 cut(s)	386, 663
BsnI	GGCC	1 cut(s)	89
Bso31I	GGTCTC	1 cut(s)	890
Bsp1286I	GDGCHC	1 cut(s)	755
Bsp143I	GATC	3 cut(s)	193, 746, 809
Bsp1720I	GCTNAGC	1 cut(s)	332
BspACI	CCGC	1 cut(s)	936
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	345
BspFNI	CGCG	1 cut(s)	1020
BspLI	GGNNCC	2 cut(s)	367, 1030
BspMAI	CTGCAG	2 cut(s)	120, 400
BspPI	GGATC	2 cut(s)	754, 817
BspT107I	GGYRCC	1 cut(s)	365
BspTNI	GGTCTC	1 cut(s)	890
BsrBI	CCGCTC	1 cut(s)	938
BsrI	ACTGG	1 cut(s)	687
BssECI	CCNNGG	4 cut(s)	284, 403, 612, 1049
BssMI	GATC	3 cut(s)	193, 746, 809
BssNI	GRCGYC	1 cut(s)	188
BssSI	CACGAG	1 cut(s)	200
Bst2BI	CACGAG	1 cut(s)	200
Bst2UI	CCWGG	4 cut(s)	50, 285, 405, 614
Bst4CI	ACNGT	6 cut(s)	262, 446, 465, 594, 646, 1033
Bst6I	CTCTTC	2 cut(s)	76, 888
BstACI	GRCGYC	1 cut(s)	188
BstBAI	YACGTR	1 cut(s)	349
BstDEI	CTNAG	3 cut(s)	332, 637, 854
BstF5I	GGATG	4 cut(s)	60, 90, 90, 852
BstFNI	CGCG	1 cut(s)	1020
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	3 cut(s)	196, 749, 812
BstMAI	GTCTC	3 cut(s)	611, 700, 890
BstMBI	GATC	3 cut(s)	193, 746, 809
BstMWI	GCNNNNNNNGC	4 cut(s)	245, 392, 523, 532
BstNI	CCWGG	4 cut(s)	50, 285, 405, 614
BstNSI	RCATGY	2 cut(s)	356, 928
BstPAI	GACNNNNGTC	1 cut(s)	463
BstSCI	CCNGG	4 cut(s)	48, 283, 403, 612
BstSFI	CTRYAG	3 cut(s)	116, 396, 590
BstSLI	GKGCMC	1 cut(s)	755
BstUI	CGCG	1 cut(s)	1020
BstV1I	GCAGC	7 cut(s)	130, 382, 404, 547, 646, 776, 882
BstV2I	GAAGAC	1 cut(s)	634
BstX2I	RGATCY	1 cut(s)	809
BstYI	RGATCY	1 cut(s)	809
BsuI	GTATCC	1 cut(s)	697
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	4 cut(s)	60, 90, 90, 852
BtsIMutI	CAGTG	1 cut(s)	651
CfoI	GCGC	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	458
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	6 cut(s)	7, 350, 545, 642, 740, 878
CviAII	CATG	3 cut(s)	353, 530, 925
CviQI	GTAC	6 cut(s)	7, 350, 545, 642, 740, 878
DdeI	CTNAG	3 cut(s)	332, 637, 854
DpnI	GATC	3 cut(s)	195, 748, 811
DpnII	GATC	3 cut(s)	193, 746, 809
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	2 cut(s)	76, 888
EarI	CTCTTC	2 cut(s)	76, 888
Eco31I	GGTCTC	1 cut(s)	890
Eco47I	GGWCC	1 cut(s)	458
Eco47III	AGCGCT	1 cut(s)	206
Eco57I	CTGAAG	3 cut(s)	156, 441, 957
EcoRII	CCWGG	4 cut(s)	48, 283, 403, 612
FaeI	CATG	3 cut(s)	356, 533, 928
FaqI	GGGAC	2 cut(s)	386, 663
FatI	CATG	3 cut(s)	352, 529, 924
FauNDI	CATATG	1 cut(s)	438
Fnu4HI	GCNGC	7 cut(s)	119, 393, 396, 536, 660, 790, 871
FokI	GGATG	4 cut(s)	47, 77, 97, 859
Fsp4HI	GCNGC	7 cut(s)	119, 393, 396, 536, 660, 790, 871
FspBI	CTAG	3 cut(s)	149, 623, 1090
GlaI	GCGC	1 cut(s)	206
GluI	GCNGC	7 cut(s)	119, 393, 396, 536, 660, 790, 871
GsaI	CCCAGC	1 cut(s)	233
GsuI	CTGGAG	2 cut(s)	302, 623
HaeII	RGCGCY	1 cut(s)	208
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	1 cut(s)	122
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	1 cut(s)	207
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	3 cut(s)	356, 533, 928
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HinfI	GANTC	7 cut(s)	140, 177, 280, 310, 340, 887, 1058
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	3 cut(s)	11, 787, 1001
Hpy166II	GTNNAC	2 cut(s)	223, 784
Hpy188I	TCNGA	8 cut(s)	421, 458, 679, 892, 912, 976, 1010, 1050
Hpy188III	TCNNGA	3 cut(s)	98, 144, 319
Hpy8I	GTNNAC	2 cut(s)	223, 784
HpyAV	CCTTC	4 cut(s)	238, 516, 800, 981
HpyCH4III	ACNGT	6 cut(s)	262, 446, 465, 594, 646, 1033
HpyCH4IV	ACGT	1 cut(s)	348
HpyF10VI	GCNNNNNNNGC	4 cut(s)	245, 392, 523, 532
HpyF3I	CTNAG	3 cut(s)	332, 637, 854
HpySE526I	ACGT	1 cut(s)	348
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	3 cut(s)	356, 533, 928
HspAI	GCGC	1 cut(s)	205
Kzo9I	GATC	3 cut(s)	193, 746, 809
LmnI	GCTCC	1 cut(s)	236
Lsp1109I	GCAGC	7 cut(s)	130, 382, 404, 547, 646, 776, 882
LweI	GCATC	3 cut(s)	115, 154, 1014
MaeI	CTAG	3 cut(s)	149, 623, 1090
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	989
MalI	GATC	3 cut(s)	195, 748, 811
MbiI	CCGCTC	1 cut(s)	938
MboI	GATC	3 cut(s)	193, 746, 809
MboII	GAAGA	5 cut(s)	63, 66, 149, 639, 905
MflI	RGATCY	1 cut(s)	809
MhlI	GDGCHC	1 cut(s)	755
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	2 cut(s)	378, 507
MluNI	TGGCCA	1 cut(s)	89
MlyI	GAGTC	2 cut(s)	171, 319
MnlI	CCTC	7 cut(s)	79, 105, 227, 535, 803, 808, 1044
Mox20I	TGGCCA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	89
MslI	CAYNNNNRTG	2 cut(s)	351, 486
Msp20I	TGGCCA	1 cut(s)	89
MspA1I	CMGCKG	3 cut(s)	229, 395, 789
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	4 cut(s)	50, 285, 405, 614
MvaI	CCWGG	4 cut(s)	50, 285, 405, 614
MvnI	CGCG	1 cut(s)	1020
MwoI	GCNNNNNNNGC	4 cut(s)	245, 392, 523, 532
NdeI	CATATG	1 cut(s)	438
NdeII	GATC	3 cut(s)	193, 746, 809
NlaIII	CATG	3 cut(s)	356, 533, 928
NlaIV	GGNNCC	2 cut(s)	367, 1030
NmuCI	GTSAC	1 cut(s)	989
NspI	RCATGY	2 cut(s)	356, 928
PciI	ACATGT	1 cut(s)	924
PfeI	GAWTC	5 cut(s)	140, 280, 340, 887, 1058
PkrI	GCNGC	7 cut(s)	120, 394, 397, 537, 661, 791, 872
PleI	GAGTC	2 cut(s)	171, 318
PpsI	GAGTC	2 cut(s)	171, 318
Ppu21I	YACGTR	1 cut(s)	349
PscI	ACATGT	1 cut(s)	924
PshAI	GACNNNNGTC	1 cut(s)	463
PsiI	TTATAA	1 cut(s)	864
Psp6I	CCWGG	4 cut(s)	48, 283, 403, 612
PspFI	CCCAGC	1 cut(s)	229
PspGI	CCWGG	4 cut(s)	48, 283, 403, 612
PspN4I	GGNNCC	2 cut(s)	367, 1030
PspPI	GGNCC	1 cut(s)	458
PsrI	GAACNNNNNNTAC	2 cut(s)	813, 845
PstI	CTGCAG	2 cut(s)	120, 400
PsuI	RGATCY	1 cut(s)	809
PvuII	CAGCTG	3 cut(s)	229, 395, 789
RsaI	GTAC	6 cut(s)	8, 351, 546, 643, 741, 879
RsaNI	GTAC	6 cut(s)	7, 350, 545, 642, 740, 878
RseI	CAYNNNNRTG	2 cut(s)	351, 486
SatI	GCNGC	7 cut(s)	119, 393, 396, 536, 660, 790, 871
Sau3AI	GATC	3 cut(s)	193, 746, 809
Sau96I	GGNCC	1 cut(s)	458
SchI	GAGTC	2 cut(s)	171, 319
ScrFI	CCNGG	4 cut(s)	50, 285, 405, 614
SduI	GDGCHC	1 cut(s)	755
SfaNI	GCATC	3 cut(s)	115, 154, 1014
SfcI	CTRYAG	3 cut(s)	116, 396, 590
SinI	GGWCC	1 cut(s)	458
SmiMI	CAYNNNNRTG	2 cut(s)	351, 486
SmlI	CTYRAG	2 cut(s)	539, 576
SmoI	CTYRAG	2 cut(s)	539, 576
SpeI	ACTAGT	1 cut(s)	148
Sse9I	AATT	2 cut(s)	378, 507
SsiI	CCGC	1 cut(s)	936
SspMI	CTAG	3 cut(s)	149, 623, 1090
StyD4I	CCNGG	4 cut(s)	48, 283, 403, 612
TaaI	ACNGT	6 cut(s)	262, 446, 465, 594, 646, 1033
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	1 cut(s)	570
TasI	AATT	2 cut(s)	378, 507
TatI	WGTACW	1 cut(s)	739
TfiI	GAWTC	5 cut(s)	140, 280, 340, 887, 1058
TscAI	CASTG	1 cut(s)	651
TseFI	GTSAC	1 cut(s)	989
TseI	GCWGC	7 cut(s)	118, 392, 395, 535, 659, 789, 870
Tsp45I	GTSAC	1 cut(s)	989
TspDTI	ATGAA	5 cut(s)	199, 281, 455, 464, 504
TspRI	CASTG	1 cut(s)	651
VpaK11BI	GGWCC	1 cut(s)	458
XceI	RCATGY	2 cut(s)	356, 928
XcmI	CCANNNNNNNNNTGG	2 cut(s)	180, 844
XspI	CTAG	3 cut(s)	149, 623, 1090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.