Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003866

Physical Location & Seq

Genomic Coordinates Forward (+)

253003 .. 255121

Gene Structure 2119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g00160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGATGTACCATCATCAGCTGCAGCACCACCGCCAAAACCACCGCCAACACCAACACCAACACCAGCACCAGCACCAGCACCAGCACCAAGGAAAGAACATCATCCACTCTTCTGCTTCTTCAAGCAGAATATCGATGCCTAACATCCCATCTGAAAGGATTTTGTTTCTACAGCAAGGTGACCAAAATAGCCCAGCAGGAGATTCAGGCCTTGTCCTCTCAACCGATGCCAAACCTCGACTCAAATGGACCCTCGATCTCCATGAGCGATTTATCGAAGCAGTTAACCAGCTTGGAGGAGCGGACAAGGCTACTCCGAAAACAGTTATGAAACTTATGGGGATTCCAGGCCTTACGTTGTACCACTTAAAGAGTCATCTTCAGAAGTACAGGCTTAGCAAGAATCTGCATGGAGGACATGTTACTAGTGGCCCCACCAAAATTGGTACAGGTACAGTTCCAGTTCCAGTTCCAGTGGCAGGAGAAAGTTTAATATCCGAAGCAAATGGAAGTCAGATGAGCACTATGAGCATTGGCATTGCACCCCAATCAAACAAAGGTTTACATTTAAACGAAACACTAGAGATGCAAATTGAAGTCCAGAGAAGGCTACATGAGCAACTTGAGGTTCAGCGGCACTTGCAACTTCGTATAGAGGCTCAAGGAAAATACCTACAGTCTGTGCTGGAGAAAGCCCAGGAGACACTAGGAAGACAAAACTTAGGTACAGTGGGACTTGAAGCTGCCAAAGTTCAACTCTCTGAGCTGGTGTCCAAAGTATCCTTGAACTCTGCTTTCACAGAGCTCAAAGAATTACAGGGATTGTGCCCTCAGAAAACGCAAACAAACCAGCAGCCCACCGATTGCTCAATCGACAGCTGCCTAACTTCCTGCGAAGTATCGAGAAGGGACCAGGACCAGATACACAGCAGTGGGATGCCTCTAAGACCTAATTACAATGGCAGGGCAGCAGCACTCTTGGAACATAAAGAGGCAGCACAAGATCAGCGGCCAATACTCCAAAACACCCAACTTAATTGGTGTGATGATCTGAAAGAGAACATGTTTCGTTCCCCCATAAGTAAGGATGCAGAAAAAAGAATGTTCCCTGCCGCAACAAGGTCTAGTGACTTATCCATGAGCATTGGACTACAAGGAGAAAACTGGAATATCGATAGCAAAGGAAGAGACACAGATGGAAGCTTTCTAGGCCGTACGAACAGCAGGGCTGATTCAGCTAAAGTCGAGGGTGTGAAAGTTTCTCAAGGATATAGATCAGTGCCTTACTTTGCAGCAAAACTAGACCTAAATGCTCATGATGATAATGATACTTCTTCAAGTTGCAGACAGTTTGACTTGAATGGCTTCAGCTGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

460

Amino Acids

51.15

Weight (kDa)

8.43

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240
fragaria_vesca	FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990
malus_domestica	MD12G1001900.v1.1 MD14G1001600.v1.1
prunus_persica	Prupe.7G001700_v2.0.a1
pyrus_communis	pycom12g00160 pycom49g00110
rosa_chinensis	RchiOBHm_Chr3g0497321
rosa_laevigata	RLG00000022467
rosa_multiflora	Rmu_sc0001329.1_g000016
rosa_roxburghii	Rroxscaffold_6G00388110
rosa_rugosa	Rorug03G0292200 Rorug03G0292300 Rorug03G0292400 Rorug03G0292500
rosa_samantha	Rh3AG335900 Rh3BG374100 Rh3CG370000 Rh3DG371000
rosa_wichuraiana	Rw3G029540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	302
AciI	CCGC	6 cut(s)	31, 43, 302, 634, 1009, 1113
AcoI	YGGCCR	1 cut(s)	1010
AcuI	CTGAAG	2 cut(s)	365, 1351
AfaI	GTAC	7 cut(s)	8, 362, 389, 448, 454, 727, 1216
AfiI	CCNNNNNNNGG	2 cut(s)	479, 1119
AflIII	ACRYGT	2 cut(s)	418, 1062
AgsI	TTSAA	7 cut(s)	123, 596, 740, 755, 787, 1338, 1360
AhlI	ACTAGT	1 cut(s)	425
AjnI	CCWGG	3 cut(s)	346, 696, 912
AleI	CACNNNNGTG	1 cut(s)	930
Alw21I	GWGCWC	2 cut(s)	524, 807
Alw26I	GTCTC	2 cut(s)	695, 1182
AoxI	GGCC	5 cut(s)	208, 349, 430, 1010, 1210
ApeKI	GCWGC	9 cut(s)	19, 22, 743, 853, 879, 968, 971, 995, 1292
Asp700I	GAANNNNTTC	1 cut(s)	1364
AspS9I	GGNCC	4 cut(s)	249, 431, 910, 916
AsuHPI	GGTGA	1 cut(s)	191
AvaII	GGWCC	3 cut(s)	249, 910, 916
BaeGI	GKGCMC	1 cut(s)	830
BanII	GRGCYC	1 cut(s)	807
BbsI	GAAGAC	1 cut(s)	718
Bbv12I	GWGCWC	2 cut(s)	524, 807
BbvI	GCAGC	9 cut(s)	6, 34, 730, 865, 866, 980, 983, 1007, 1304
BccI	CCATC	3 cut(s)	18, 157, 1190
BceAI	ACGGC	1 cut(s)	1197
BciT130I	CCWGG	3 cut(s)	348, 698, 914
BciVI	GTATCC	1 cut(s)	790
BcoDI	GTCTC	2 cut(s)	695, 1182
BcuI	ACTAGT	1 cut(s)	425
BfaI	CTAG	6 cut(s)	426, 581, 707, 1125, 1208, 1301
BfmI	CTRYAG	3 cut(s)	20, 170, 674
BfuI	GTATCC	1 cut(s)	790
BlpI	GCTNAGC	1 cut(s)	395
Bme1390I	CCNGG	3 cut(s)	348, 698, 914
Bme18I	GGWCC	3 cut(s)	249, 910, 916
BmgT120I	GGNCC	4 cut(s)	249, 431, 910, 916
BmiI	GGNNCC	3 cut(s)	251, 433, 911
BmrFI	CCNGG	3 cut(s)	348, 698, 914
BmsI	GCATC	5 cut(s)	126, 217, 576, 927, 1078
BpiI	GAAGAC	1 cut(s)	718
BpmI	CTGGAG	1 cut(s)	707
Bpu1102I	GCTNAGC	1 cut(s)	395
BpuEI	CTTGAG	3 cut(s)	644, 645, 1248
Bsa29I	ATCGAT	2 cut(s)	134, 1173
BsaBI	GATNNNNATC	1 cut(s)	1273
BsaJI	CCNNGG	2 cut(s)	88, 696
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	2 cut(s)	479, 1119
Bse1I	ACTGG	4 cut(s)	461, 467, 473, 1169
Bse3DI	GCAATG	1 cut(s)	537
Bse8I	GATNNNNATC	1 cut(s)	1273
BseBI	CCWGG	3 cut(s)	348, 698, 914
BseCI	ATCGAT	2 cut(s)	134, 1173
BseDI	CCNNGG	2 cut(s)	88, 696
BseGI	GGATG	4 cut(s)	102, 144, 942, 1093
BseJI	GATNNNNATC	1 cut(s)	1273
BseLI	CCNNNNNNNGG	2 cut(s)	479, 1119
BseMI	GCAATG	1 cut(s)	537
BseMII	CTCAG	2 cut(s)	753, 845
BseNI	ACTGG	4 cut(s)	461, 467, 473, 1169
BseRI	GAGGAG	1 cut(s)	312
BseSI	GKGCMC	1 cut(s)	830
BseXI	GCAGC	9 cut(s)	6, 34, 730, 865, 866, 980, 983, 1007, 1304
BseYI	CCCAGC	1 cut(s)	193
BshFI	GGCC	5 cut(s)	210, 351, 432, 1012, 1212
BshVI	ATCGAT	2 cut(s)	134, 1173
BsiHKAI	GWGCWC	2 cut(s)	524, 807
BsiWI	CGTACG	1 cut(s)	1214
BslFI	GGGAC	2 cut(s)	747, 923
BslI	CCNNNNNNNGG	2 cut(s)	479, 1119
BsmAI	GTCTC	2 cut(s)	695, 1182
BsmFI	GGGAC	2 cut(s)	747, 923
BsnI	GGCC	5 cut(s)	210, 351, 432, 1012, 1212
Bsp1286I	GDGCHC	3 cut(s)	524, 807, 830
Bsp143I	GATC	4 cut(s)	256, 1003, 1048, 1274
Bsp1720I	GCTNAGC	1 cut(s)	395
BspACI	CCGC	6 cut(s)	31, 43, 302, 634, 1009, 1113
BspANI	GGCC	5 cut(s)	210, 351, 432, 1012, 1212
BspCNI	CTCAG	2 cut(s)	754, 844
BspDI	ATCGAT	2 cut(s)	134, 1173
BspHI	TCATGA	1 cut(s)	1315
BspLI	GGNNCC	3 cut(s)	251, 433, 911
BspMAI	CTGCAG	1 cut(s)	24
BsrBI	CCGCTC	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	537
BsrI	ACTGG	4 cut(s)	461, 467, 473, 1169
BssECI	CCNNGG	2 cut(s)	88, 696
BssMI	GATC	4 cut(s)	256, 1003, 1048, 1274
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	3 cut(s)	348, 698, 914
Bst4CI	ACNGT	5 cut(s)	325, 457, 678, 730, 1350
Bst6I	CTCTTC	2 cut(s)	115, 1180
BstDEI	CTNAG	5 cut(s)	395, 721, 762, 831, 944
BstEII	GGTNACC	1 cut(s)	179
BstF5I	GGATG	4 cut(s)	102, 144, 942, 1093
BstKTI	GATC	4 cut(s)	259, 1006, 1051, 1277
BstMAI	GTCTC	2 cut(s)	695, 1182
BstMBI	GATC	4 cut(s)	256, 1003, 1048, 1274
BstMWI	GCNNNNNNNGC	6 cut(s)	308, 528, 616, 640, 1209, 1235
BstNI	CCWGG	3 cut(s)	348, 698, 914
BstNSI	RCATGY	2 cut(s)	422, 1066
BstPI	GGTNACC	1 cut(s)	179
BstSCI	CCNGG	3 cut(s)	346, 696, 912
BstSFI	CTRYAG	3 cut(s)	20, 170, 674
BstSLI	GKGCMC	1 cut(s)	830
BstV1I	GCAGC	9 cut(s)	6, 34, 730, 865, 866, 980, 983, 1007, 1304
BstV2I	GAAGAC	1 cut(s)	718
Bsu15I	ATCGAT	2 cut(s)	134, 1173
BsuI	GTATCC	1 cut(s)	790
BsuRI	GGCC	5 cut(s)	210, 351, 432, 1012, 1212
BsuTUI	ATCGAT	2 cut(s)	134, 1173
BtsCI	GGATG	4 cut(s)	102, 144, 942, 1093
BtsI	GCAGTG	1 cut(s)	937
BtsIMutI	CAGTG	4 cut(s)	480, 735, 937, 1284
CciI	TCATGA	1 cut(s)	1315
Cfr13I	GGNCC	4 cut(s)	249, 431, 910, 916
ClaI	ATCGAT	2 cut(s)	134, 1173
Csp6I	GTAC	7 cut(s)	7, 361, 388, 447, 453, 726, 1215
CspCI	CAANNNNNGTGG	2 cut(s)	424, 459
CviAII	CATG	7 cut(s)	263, 410, 419, 614, 1063, 1138, 1316
CviQI	GTAC	7 cut(s)	7, 361, 388, 447, 453, 726, 1215
DdeI	CTNAG	5 cut(s)	395, 721, 762, 831, 944
DpnI	GATC	4 cut(s)	258, 1005, 1050, 1276
DpnII	GATC	4 cut(s)	256, 1003, 1048, 1274
DraI	TTTAAA	1 cut(s)	570
EaeI	YGGCCR	1 cut(s)	1010
Eam1104I	CTCTTC	2 cut(s)	115, 1180
EarI	CTCTTC	2 cut(s)	115, 1180
Ecl136II	GAGCTC	1 cut(s)	805
Eco130I	CCWWGG	1 cut(s)	88
Eco147I	AGGCCT	2 cut(s)	210, 351
Eco24I	GRGCYC	1 cut(s)	807
Eco47I	GGWCC	3 cut(s)	249, 910, 916
Eco53kI	GAGCTC	1 cut(s)	805
Eco57I	CTGAAG	2 cut(s)	365, 1351
Eco91I	GGTNACC	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	805
EcoO65I	GGTNACC	1 cut(s)	179
EcoRII	CCWGG	3 cut(s)	346, 696, 912
EcoT14I	CCWWGG	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	807
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	7 cut(s)	266, 413, 422, 617, 1066, 1141, 1319
FaqI	GGGAC	2 cut(s)	747, 923
FatI	CATG	7 cut(s)	262, 409, 418, 613, 1062, 1137, 1315
FokI	GGATG	4 cut(s)	89, 131, 949, 1100
FriOI	GRGCYC	1 cut(s)	807
FspBI	CTAG	6 cut(s)	426, 581, 707, 1125, 1208, 1301
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	707
HaeIII	GGCC	5 cut(s)	210, 351, 432, 1012, 1212
Hin1II	CATG	7 cut(s)	266, 413, 422, 617, 1066, 1141, 1319
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	1201
HinfI	GANTC	6 cut(s)	203, 240, 343, 373, 403, 1232
HpaI	GTTAAC	1 cut(s)	286
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	2 cut(s)	286, 563
Hpy188I	TCNGA	8 cut(s)	154, 318, 384, 499, 516, 763, 834, 1053
Hpy188III	TCNNGA	3 cut(s)	601, 903, 1316
Hpy8I	GTNNAC	2 cut(s)	286, 563
HpyAV	CCTTC	2 cut(s)	600, 900
HpyCH4III	ACNGT	5 cut(s)	325, 457, 678, 730, 1350
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	8 cut(s)	22, 409, 542, 589, 643, 1091, 1292, 1344
HpyF10VI	GCNNNNNNNGC	6 cut(s)	308, 528, 616, 640, 1209, 1235
HpyF3I	CTNAG	5 cut(s)	395, 721, 762, 831, 944
HpySE526I	ACGT	1 cut(s)	356
Hsp92II	CATG	7 cut(s)	266, 413, 422, 617, 1066, 1141, 1319
KspAI	GTTAAC	1 cut(s)	286
Kzo9I	GATC	4 cut(s)	256, 1003, 1048, 1274
LmnI	GCTCC	2 cut(s)	299, 1374
Lsp1109I	GCAGC	9 cut(s)	6, 34, 730, 865, 866, 980, 983, 1007, 1304
LweI	GCATC	5 cut(s)	126, 217, 576, 927, 1078
MaeI	CTAG	6 cut(s)	426, 581, 707, 1125, 1208, 1301
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	3 cut(s)	179, 421, 1127
MalI	GATC	4 cut(s)	258, 1005, 1050, 1276
MbiI	CCGCTC	1 cut(s)	302
MboI	GATC	4 cut(s)	256, 1003, 1048, 1274
MboII	GAAGA	6 cut(s)	102, 111, 371, 723, 1197, 1326
MhlI	GDGCHC	3 cut(s)	524, 807, 830
MluCI	AATT	5 cut(s)	441, 591, 812, 952, 1036
MlyI	GAGTC	2 cut(s)	234, 382
MroXI	GAANNNNTTC	1 cut(s)	1364
MseI	TTAA	5 cut(s)	285, 368, 491, 569, 1035
MslI	CAYNNNNRTG	1 cut(s)	930
MspA1I	CMGCKG	5 cut(s)	19, 634, 879, 1009, 1371
MspR9I	CCNGG	3 cut(s)	348, 698, 914
MvaI	CCWGG	3 cut(s)	348, 698, 914
MwoI	GCNNNNNNNGC	6 cut(s)	308, 528, 616, 640, 1209, 1235
NdeII	GATC	4 cut(s)	256, 1003, 1048, 1274
NlaIII	CATG	7 cut(s)	266, 413, 422, 617, 1066, 1141, 1319
NlaIV	GGNNCC	3 cut(s)	251, 433, 911
NmuCI	GTSAC	2 cut(s)	179, 1127
NspI	RCATGY	2 cut(s)	422, 1066
OliI	CACNNNNGTG	1 cut(s)	930
PagI	TCATGA	1 cut(s)	1315
PceI	AGGCCT	2 cut(s)	210, 351
PciI	ACATGT	2 cut(s)	418, 1062
PdmI	GAANNNNTTC	1 cut(s)	1364
PfeI	GAWTC	4 cut(s)	203, 343, 403, 1232
Pfl23II	CGTACG	1 cut(s)	1214
PleI	GAGTC	2 cut(s)	234, 381
PpsI	GAGTC	2 cut(s)	234, 381
PscI	ACATGT	2 cut(s)	418, 1062
Psp124BI	GAGCTC	1 cut(s)	807
Psp6I	CCWGG	3 cut(s)	346, 696, 912
PspEI	GGTNACC	1 cut(s)	179
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	3 cut(s)	346, 696, 912
PspLI	CGTACG	1 cut(s)	1214
PspN4I	GGNNCC	3 cut(s)	251, 433, 911
PspPI	GGNCC	4 cut(s)	249, 431, 910, 916
PstI	CTGCAG	1 cut(s)	24
PvuII	CAGCTG	3 cut(s)	19, 879, 1371
RsaI	GTAC	7 cut(s)	8, 362, 389, 448, 454, 727, 1216
RsaNI	GTAC	7 cut(s)	7, 361, 388, 447, 453, 726, 1215
RseI	CAYNNNNRTG	1 cut(s)	930
SacI	GAGCTC	1 cut(s)	807
SaqAI	TTAA	5 cut(s)	285, 368, 491, 569, 1035
Sau3AI	GATC	4 cut(s)	256, 1003, 1048, 1274
Sau96I	GGNCC	4 cut(s)	249, 431, 910, 916
SchI	GAGTC	2 cut(s)	234, 382
ScrFI	CCNGG	3 cut(s)	348, 698, 914
SduI	GDGCHC	3 cut(s)	524, 807, 830
SfaNI	GCATC	5 cut(s)	126, 217, 576, 927, 1078
SfcI	CTRYAG	3 cut(s)	20, 170, 674
SinI	GGWCC	3 cut(s)	249, 910, 916
SmiMI	CAYNNNNRTG	1 cut(s)	930
SmlI	CTYRAG	3 cut(s)	623, 660, 1263
SmoI	CTYRAG	3 cut(s)	623, 660, 1263
SpeI	ACTAGT	1 cut(s)	425
Sse9I	AATT	5 cut(s)	441, 591, 812, 952, 1036
SseBI	AGGCCT	2 cut(s)	210, 351
SsiI	CCGC	6 cut(s)	31, 43, 302, 634, 1009, 1113
SspMI	CTAG	6 cut(s)	426, 581, 707, 1125, 1208, 1301
SstI	GAGCTC	1 cut(s)	807
StuI	AGGCCT	2 cut(s)	210, 351
StyD4I	CCNGG	3 cut(s)	346, 696, 912
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	5 cut(s)	325, 457, 678, 730, 1350
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	8 cut(s)	134, 238, 255, 276, 873, 902, 1173, 1245
TasI	AATT	5 cut(s)	441, 591, 812, 952, 1036
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	3 cut(s)	637, 1012, 1115
TfiI	GAWTC	4 cut(s)	203, 343, 403, 1232
Tru1I	TTAA	5 cut(s)	285, 368, 491, 569, 1035
Tru9I	TTAA	5 cut(s)	285, 368, 491, 569, 1035
TscAI	CASTG	4 cut(s)	480, 735, 937, 1284
TseFI	GTSAC	2 cut(s)	179, 1127
TseI	GCWGC	9 cut(s)	19, 22, 743, 853, 879, 968, 971, 995, 1292
Tsp45I	GTSAC	2 cut(s)	179, 1127
TspDTI	ATGAA	1 cut(s)	344
TspRI	CASTG	4 cut(s)	480, 735, 937, 1284
VpaK11BI	GGWCC	3 cut(s)	249, 910, 916
XceI	RCATGY	2 cut(s)	422, 1066
XmnI	GAANNNNTTC	1 cut(s)	1364
XspI	CTAG	6 cut(s)	426, 581, 707, 1125, 1208, 1301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.