Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003866

Physical Location & Seq

Genomic Coordinates Forward (+)

48861819 .. 48865248

Gene Structure 3430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG335900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGCAGTTTAAAAATTTCATGGTTTTCAATGCAGAGGCTACTCCAAAAACAGTAATGAAACTTATGGGGATTCCAGGGCTTACATTATACCACCTAAAGAGTCATCTCCAGAAGTATAGGCTCAGCAAGAATCTGCACGTACATGCTAATAGTGGCACCACAAACAAAATTGCTGCAGTGCCAGGAGAAAGAATATCTGAAGTAAATGGAACTCATATGAACAGTATGAACATCGGACCACAGTCAAATAAAGGCTTACATATAAATGAAACACTACAAATGCAAATTGAAGTGCAGAGAAGGCTACATGAGCAGCTTGAGGTACAGCGACACTTACAACTTCGTATCGAAGCTCAAGGAAAATACCTACAGTCGGTGCTGGAGAAAGCCCAGGAGACACTAGGAAGACAGAACTTAGGTACAGTGGGACTTGAAGCTGCGAAAGTTCAACTCTCTGAACTGGTATCCAAAGTCTCCACCCAATGCTTGAACTCTGCATTTACAGAGCTAAAAGAAGTACAGGGATCGTGCCCCCAAAACCAGCCCACCGATTGCTCTGTGGACAGCTGCCTCACCTCCTGTGAAGGATCTAAAAAGGATCAGGAGATACAAAACAATAGCAGGATGGGGCTAAGAGCTTATAATAGCAGCAGGGTACTAATGGAATCTGAAGAGACCATTCTACATCTGAAAGAGAATAACATGTTTGTTTCCACTCTAAGCAAGAATGCAGACCAAAGAATGTTTCCTTCAGAAGCAAGGTCTGGTGACTTGTCTATGAGCATCGGACTTGAACGAGAAAAATGGAACCGTAGCAACTGCAACTCCGAGGAAAGATTCAAAGCAAGAAACACAGATGACAGCTTTCTAGAGCATACAAACAACAAGGCAGATTCAGTTAAAGTAGATCAGACTCAGAAAGTTTCTCAAGGATATAGCGTGCCATACTTTGCAGCAAAACTGGACCTAAATTCTCATGATGATATTGATGCTTCTTCAAGTTGCAAACAGTTTGACTTGAATGGTTTTAGCTGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

346

Amino Acids

38.91

Weight (kDa)

7.16

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_CC_LHEQLE	PF14379	87 - 133	1.5e-24	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240
fragaria_vesca	FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990
malus_domestica	MD12G1001900.v1.1 MD14G1001600.v1.1
prunus_persica	Prupe.7G001700_v2.0.a1
pyrus_communis	pycom12g00160 pycom49g00110
rosa_chinensis	RchiOBHm_Chr3g0497321
rosa_laevigata	RLG00000022467
rosa_multiflora	Rmu_sc0001329.1_g000016
rosa_roxburghii	Rroxscaffold_6G00388110
rosa_rugosa	Rorug03G0292200 Rorug03G0292300 Rorug03G0292400 Rorug03G0292500
rosa_samantha	Rh3AG335900 Rh3BG374100 Rh3CG370000 Rh3DG371000
rosa_wichuraiana	Rw3G029540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	642
AccB1I	GGYRCC	1 cut(s)	155
AclWI	GGATC	3 cut(s)	532, 595, 606
AcsI	RAATTY	2 cut(s)	13, 970
AcuI	CTGAAG	3 cut(s)	219, 690, 735
AfaI	GTAC	5 cut(s)	141, 324, 421, 519, 657
AfiI	CCNNNNNNNGG	1 cut(s)	373
AflIII	ACRYGT	1 cut(s)	702
AgsI	TTSAA	9 cut(s)	28, 290, 434, 449, 490, 794, 841, 999, 1021
AjnI	CCWGG	3 cut(s)	73, 181, 390
AjuI	GAANNNNNNNTTGG	2 cut(s)	729, 761
AluBI	AGCT	9 cut(s)	316, 353, 437, 508, 567, 638, 864, 1032, 1038
AluI	AGCT	9 cut(s)	316, 353, 437, 508, 567, 638, 864, 1032, 1038
Alw26I	GTCTC	3 cut(s)	389, 478, 668
AlwI	GGATC	3 cut(s)	532, 595, 606
ApeKI	GCWGC	6 cut(s)	173, 313, 437, 567, 648, 953
ApoI	RAATTY	2 cut(s)	13, 970
AspS9I	GGNCC	2 cut(s)	236, 964
AsuHPI	GGTGA	2 cut(s)	565, 779
AvaII	GGWCC	2 cut(s)	236, 964
BaeGI	GKGCMC	1 cut(s)	533
BanI	GGYRCC	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	412
BbvI	GCAGC	6 cut(s)	160, 325, 424, 554, 660, 965
BccI	CCATC	1 cut(s)	619
BciT130I	CCWGG	3 cut(s)	75, 183, 392
BciVI	GTATCC	1 cut(s)	475
BcoDI	GTCTC	3 cut(s)	389, 478, 668
BfaI	CTAG	2 cut(s)	401, 869
BfmI	CTRYAG	2 cut(s)	174, 368
BfuI	GTATCC	1 cut(s)	475
BisI	GCNGC	6 cut(s)	174, 314, 438, 568, 649, 954
BlpI	GCTNAGC	1 cut(s)	122
BlsI	GCNGC	6 cut(s)	175, 315, 439, 569, 650, 955
Bme1390I	CCNGG	3 cut(s)	75, 183, 392
Bme18I	GGWCC	2 cut(s)	236, 964
BmgT120I	GGNCC	2 cut(s)	236, 964
BmiI	GGNNCC	2 cut(s)	157, 809
BmrFI	CCNGG	3 cut(s)	75, 183, 392
BmsI	GCATC	2 cut(s)	792, 979
BoxI	GACNNNNGTC	1 cut(s)	241
BpiI	GAAGAC	1 cut(s)	412
BpmI	CTGGAG	2 cut(s)	92, 401
Bpu1102I	GCTNAGC	1 cut(s)	122
BpuEI	CTTGAG	3 cut(s)	338, 339, 912
BsaAI	YACGTR	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	668
BsaJI	CCNNGG	3 cut(s)	74, 390, 828
BsaXI	ACNNNNNCTCC	2 cut(s)	809, 839
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse1I	ACTGG	2 cut(s)	465, 966
BseBI	CCWGG	3 cut(s)	75, 183, 392
BseDI	CCNNGG	3 cut(s)	74, 390, 828
BseGI	GGATG	1 cut(s)	630
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMII	CTCAG	2 cut(s)	136, 929
BseNI	ACTGG	2 cut(s)	465, 966
BseSI	GKGCMC	1 cut(s)	533
BseXI	GCAGC	6 cut(s)	160, 325, 424, 554, 660, 965
BsgI	GTGCAG	2 cut(s)	119, 314
BshNI	GGYRCC	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	3 cut(s)	389, 478, 668
BsmFI	GGGAC	1 cut(s)	441
BsmI	GAATGC	1 cut(s)	733
Bso31I	GGTCTC	1 cut(s)	668
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp143I	GATC	4 cut(s)	524, 587, 598, 907
Bsp1720I	GCTNAGC	1 cut(s)	122
BspCNI	CTCAG	2 cut(s)	135, 928
BspHI	TCATGA	1 cut(s)	976
BspLI	GGNNCC	2 cut(s)	157, 809
BspMAI	CTGCAG	1 cut(s)	178
BspPI	GGATC	3 cut(s)	532, 595, 606
BspT107I	GGYRCC	1 cut(s)	155
BspTNI	GGTCTC	1 cut(s)	668
BsrI	ACTGG	2 cut(s)	465, 966
BssECI	CCNNGG	3 cut(s)	74, 390, 828
BssMI	GATC	4 cut(s)	524, 587, 598, 907
Bst2UI	CCWGG	3 cut(s)	75, 183, 392
Bst4CI	ACNGT	7 cut(s)	52, 224, 243, 372, 424, 812, 1011
Bst6I	CTCTTC	1 cut(s)	666
BstBAI	YACGTR	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	941
BstDEI	CTNAG	5 cut(s)	122, 415, 632, 719, 915
BstF5I	GGATG	1 cut(s)	630
BstKTI	GATC	4 cut(s)	527, 590, 601, 910
BstMAI	GTCTC	3 cut(s)	389, 478, 668
BstMBI	GATC	4 cut(s)	524, 587, 598, 907
BstMWI	GCNNNNNNNGC	2 cut(s)	301, 310
BstNI	CCWGG	3 cut(s)	75, 183, 392
BstNSI	RCATGY	2 cut(s)	146, 706
BstPAI	GACNNNNGTC	1 cut(s)	241
BstSCI	CCNGG	3 cut(s)	73, 181, 390
BstSFI	CTRYAG	2 cut(s)	174, 368
BstSLI	GKGCMC	1 cut(s)	533
BstV1I	GCAGC	6 cut(s)	160, 325, 424, 554, 660, 965
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
BsuI	GTATCC	1 cut(s)	475
BtsCI	GGATG	1 cut(s)	630
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	183, 429
Cac8I	GCNNGC	1 cut(s)	941
CciI	TCATGA	1 cut(s)	976
Cfr13I	GGNCC	2 cut(s)	236, 964
Csp6I	GTAC	5 cut(s)	140, 323, 420, 518, 656
CviAII	CATG	5 cut(s)	19, 143, 308, 703, 977
CviQI	GTAC	5 cut(s)	140, 323, 420, 518, 656
DdeI	CTNAG	5 cut(s)	122, 415, 632, 719, 915
DpnI	GATC	4 cut(s)	526, 589, 600, 909
DpnII	GATC	4 cut(s)	524, 587, 598, 907
DraI	TTTAAA	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	666
EarI	CTCTTC	1 cut(s)	666
Eco31I	GGTCTC	1 cut(s)	668
Eco47I	GGWCC	2 cut(s)	236, 964
Eco57I	CTGAAG	3 cut(s)	219, 690, 735
EcoRII	CCWGG	3 cut(s)	73, 181, 390
FaeI	CATG	5 cut(s)	22, 146, 311, 706, 980
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	5 cut(s)	18, 142, 307, 702, 976
FauNDI	CATATG	1 cut(s)	216
Fnu4HI	GCNGC	6 cut(s)	174, 314, 438, 568, 649, 954
FokI	GGATG	1 cut(s)	637
Fsp4HI	GCNGC	6 cut(s)	174, 314, 438, 568, 649, 954
FspBI	CTAG	2 cut(s)	401, 869
GluI	GCNGC	6 cut(s)	174, 314, 438, 568, 649, 954
GsuI	CTGGAG	2 cut(s)	92, 401
Hin1II	CATG	5 cut(s)	22, 146, 311, 706, 980
HinfI	GANTC	7 cut(s)	70, 100, 130, 665, 837, 893, 913
HphI	GGTGA	2 cut(s)	565, 779
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188III	TCNNGA	4 cut(s)	109, 602, 869, 977
Hpy8I	GTNNAC	1 cut(s)	562
HpyAV	CCTTC	3 cut(s)	294, 578, 759
HpyCH4III	ACNGT	7 cut(s)	52, 224, 243, 372, 424, 812, 1011
HpyCH4IV	ACGT	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	2 cut(s)	301, 310
HpyF3I	CTNAG	5 cut(s)	122, 415, 632, 719, 915
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	5 cut(s)	22, 146, 311, 706, 980
Kzo9I	GATC	4 cut(s)	524, 587, 598, 907
LmnI	GCTCC	1 cut(s)	1035
Lsp1109I	GCAGC	6 cut(s)	160, 325, 424, 554, 660, 965
LweI	GCATC	2 cut(s)	792, 979
MaeI	CTAG	2 cut(s)	401, 869
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	767
MalI	GATC	4 cut(s)	526, 589, 600, 909
MboI	GATC	4 cut(s)	524, 587, 598, 907
MboII	GAAGA	3 cut(s)	417, 683, 987
MflI	RGATCY	1 cut(s)	587
MhlI	GDGCHC	1 cut(s)	533
MluCI	AATT	4 cut(s)	13, 168, 285, 970
MlyI	GAGTC	2 cut(s)	109, 907
MnlI	CCTC	5 cut(s)	28, 313, 581, 586, 823
MseI	TTAA	2 cut(s)	9, 900
MslI	CAYNNNNRTG	2 cut(s)	141, 264
MspA1I	CMGCKG	1 cut(s)	567
MspR9I	CCNGG	3 cut(s)	75, 183, 392
Mva1269I	GAATGC	1 cut(s)	733
MvaI	CCWGG	3 cut(s)	75, 183, 392
MwoI	GCNNNNNNNGC	2 cut(s)	301, 310
NdeI	CATATG	1 cut(s)	216
NdeII	GATC	4 cut(s)	524, 587, 598, 907
NlaIII	CATG	5 cut(s)	22, 146, 311, 706, 980
NlaIV	GGNNCC	2 cut(s)	157, 809
NmuCI	GTSAC	1 cut(s)	767
NspI	RCATGY	2 cut(s)	146, 706
PagI	TCATGA	1 cut(s)	976
PciI	ACATGT	1 cut(s)	702
PctI	GAATGC	1 cut(s)	733
PfeI	GAWTC	5 cut(s)	70, 130, 665, 837, 893
PkrI	GCNGC	6 cut(s)	175, 315, 439, 569, 650, 955
PleI	GAGTC	2 cut(s)	108, 907
PpsI	GAGTC	2 cut(s)	108, 907
Ppu21I	YACGTR	1 cut(s)	139
PscI	ACATGT	1 cut(s)	702
PshAI	GACNNNNGTC	1 cut(s)	241
PsiI	TTATAA	1 cut(s)	642
Psp6I	CCWGG	3 cut(s)	73, 181, 390
PspGI	CCWGG	3 cut(s)	73, 181, 390
PspN4I	GGNNCC	2 cut(s)	157, 809
PspPI	GGNCC	2 cut(s)	236, 964
PstI	CTGCAG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	587
PvuII	CAGCTG	1 cut(s)	567
RsaI	GTAC	5 cut(s)	141, 324, 421, 519, 657
RsaNI	GTAC	5 cut(s)	140, 323, 420, 518, 656
RseI	CAYNNNNRTG	2 cut(s)	141, 264
SaqAI	TTAA	2 cut(s)	9, 900
SatI	GCNGC	6 cut(s)	174, 314, 438, 568, 649, 954
Sau3AI	GATC	4 cut(s)	524, 587, 598, 907
Sau96I	GGNCC	2 cut(s)	236, 964
SchI	GAGTC	2 cut(s)	109, 907
ScrFI	CCNGG	3 cut(s)	75, 183, 392
SduI	GDGCHC	1 cut(s)	533
SfaNI	GCATC	2 cut(s)	792, 979
SfcI	CTRYAG	2 cut(s)	174, 368
SinI	GGWCC	2 cut(s)	236, 964
SmiMI	CAYNNNNRTG	2 cut(s)	141, 264
SmlI	CTYRAG	3 cut(s)	317, 354, 927
SmoI	CTYRAG	3 cut(s)	317, 354, 927
Sse9I	AATT	4 cut(s)	13, 168, 285, 970
SspMI	CTAG	2 cut(s)	401, 869
StyD4I	CCNGG	3 cut(s)	73, 181, 390
TaaI	ACNGT	7 cut(s)	52, 224, 243, 372, 424, 812, 1011
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	348
TasI	AATT	4 cut(s)	13, 168, 285, 970
TatI	WGTACW	1 cut(s)	517
TfiI	GAWTC	5 cut(s)	70, 130, 665, 837, 893
Tru1I	TTAA	2 cut(s)	9, 900
Tru9I	TTAA	2 cut(s)	9, 900
TscAI	CASTG	2 cut(s)	183, 429
TseFI	GTSAC	1 cut(s)	767
TseI	GCWGC	6 cut(s)	173, 313, 437, 567, 648, 953
Tsp45I	GTSAC	1 cut(s)	767
TspDTI	ATGAA	5 cut(s)	7, 71, 233, 242, 282
TspRI	CASTG	2 cut(s)	183, 429
VpaK11BI	GGWCC	2 cut(s)	236, 964
XapI	RAATTY	2 cut(s)	13, 970
XbaI	TCTAGA	1 cut(s)	868
XceI	RCATGY	2 cut(s)	146, 706
XspI	CTAG	2 cut(s)	401, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.