Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001329.1

Orthogroup ID

OG0003866

Physical Location & Seq

Genomic Coordinates Reverse (-)

46332 .. 48628

Gene Structure 2297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001329.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atggccatccctcctgaaaggcatctgtttctgcagccggaaacttgccctgaagattcaggactagtcctttcaactgatgccaagccaagactcaaatggacgcctgatctccacgagcgcttcatagaagcagtaaaccagctgggaggagcagagaaggctactccaaaaacagtaatgaaacttatggggattccagggcttacattataccacctaaagagtcatctccagaagtataggctcagcaagaatctgcacgtacatgctaatagtggcaccacaaacaaaattggtgcagttgcagctgcagtgccaggagaaagaatatctgaagtaaatggaactcatatgaacagtatgaacatcggaccacagtcaaataaaggcttacatataaatgaaacactacaaatgcaaattgaagtgcagagaaggctacatgagcagcttgaggtacagcgacacttacaacttcgtatcgaagctcaaggaaaatacctacagtcggtgctggagaaagcccaggagacactaggaagacagaacttgggtacagtgggacttgaagctgccaaagttcaactctctgaactggtatccaaagtctccacccaatgcttgaactctgcatttacagagctaaaagaaatacagggatcgtgcccccaaaaccagcccaccgattgctctgtggacagctgcctcacctcctgtgaaggatctaaaaaggatcaggagatacaaaacaatagcaggatggggctaagagcttataatagcagcagggtactaatggaatcggaagagaccattctacatctgaaagagaataacatgtttgtttccgctctaagcaagaatgcagaccaaagaatgtttccttcagaagcaaggtctggtgacttgtctgtgagcatcggacttgaacgagaaaaatggaaccgtagcaactgcaactccgaggaaagattcaaagcaagaaacacagatgacagctttctagagcatacaaacaacaaggcagattcagttaaagtagatcagactcagaaagtttctcaaggatatagcgtgccatactttgcagcaaaactggacctaaattctcatgatgatattgatgcttcttcaagttgcaaacagtttgacttgaatggttttagctggagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

392

Amino Acids

43.73

Weight (kDa)

6.51

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240
fragaria_vesca	FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990
malus_domestica	MD12G1001900.v1.1 MD14G1001600.v1.1
prunus_persica	Prupe.7G001700_v2.0.a1
pyrus_communis	pycom12g00160 pycom49g00110
rosa_chinensis	RchiOBHm_Chr3g0497321
rosa_laevigata	RLG00000022467
rosa_multiflora	Rmu_sc0001329.1_g000016
rosa_roxburghii	Rroxscaffold_6G00388110
rosa_rugosa	Rorug03G0292200 Rorug03G0292300 Rorug03G0292400 Rorug03G0292500
rosa_samantha	Rh3AG335900 Rh3BG374100 Rh3CG370000 Rh3DG371000
rosa_wichuraiana	Rw3G029540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	780
AccB1I	GGYRCC	1 cut(s)	281
AccBSI	CCGCTC	1 cut(s)	854
AciI	CCGC	1 cut(s)	852
AclWI	GGATC	3 cut(s)	670, 733, 744
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	1108
AcuI	CTGAAG	3 cut(s)	72, 357, 873
AcyI	GRCGYC	1 cut(s)	104
AfaI	GTAC	4 cut(s)	267, 462, 559, 795
AfeI	AGCGCT	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	511
AflIII	ACRYGT	1 cut(s)	840
AgsI	TTSAA	9 cut(s)	75, 428, 572, 587, 628, 932, 979, 1137, 1159
AhlI	ACTAGT	1 cut(s)	64
AjnI	CCWGG	3 cut(s)	199, 319, 528
AjuI	GAANNNNNNNTTGG	2 cut(s)	867, 899
Alw26I	GTCTC	3 cut(s)	527, 616, 806
AlwI	GGATC	3 cut(s)	670, 733, 744
Aor51HI	AGCGCT	1 cut(s)	122
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	8 cut(s)	34, 308, 311, 451, 575, 705, 786, 1091
ApoI	RAATTY	1 cut(s)	1108
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	374, 1102
AsuHPI	GGTGA	2 cut(s)	703, 917
AvaII	GGWCC	2 cut(s)	374, 1102
BaeGI	GKGCMC	1 cut(s)	671
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	281
BauI	CACGAG	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	550
BbvI	GCAGC	8 cut(s)	46, 298, 320, 463, 562, 692, 798, 1103
BccI	CCATC	2 cut(s)	14, 757
BciT130I	CCWGG	3 cut(s)	201, 321, 530
BciVI	GTATCC	1 cut(s)	613
BcoDI	GTCTC	3 cut(s)	527, 616, 806
BcuI	ACTAGT	1 cut(s)	64
BfaI	CTAG	3 cut(s)	65, 539, 1007
BfmI	CTRYAG	3 cut(s)	32, 312, 506
BfoI	RGCGCY	1 cut(s)	124
BfuI	GTATCC	1 cut(s)	613
BisI	GCNGC	8 cut(s)	35, 309, 312, 452, 576, 706, 787, 1092
BlpI	GCTNAGC	1 cut(s)	248
BlsI	GCNGC	8 cut(s)	36, 310, 313, 453, 577, 707, 788, 1093
Bme1390I	CCNGG	3 cut(s)	201, 321, 530
Bme18I	GGWCC	2 cut(s)	374, 1102
BmgT120I	GGNCC	2 cut(s)	374, 1102
BmiI	GGNNCC	2 cut(s)	283, 947
BmrFI	CCNGG	3 cut(s)	201, 321, 530
BmsI	GCATC	4 cut(s)	31, 70, 930, 1117
BoxI	GACNNNNGTC	1 cut(s)	379
BpiI	GAAGAC	1 cut(s)	550
BpmI	CTGGAG	2 cut(s)	218, 539
Bpu1102I	GCTNAGC	1 cut(s)	248
BpuEI	CTTGAG	3 cut(s)	476, 477, 1050
BsaAI	YACGTR	1 cut(s)	265
BsaHI	GRCGYC	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	806
BsaJI	CCNNGG	3 cut(s)	200, 528, 966
BsaXI	ACNNNNNCTCC	2 cut(s)	947, 977
Bsc4I	CCNNNNNNNGG	1 cut(s)	511
Bse1I	ACTGG	2 cut(s)	603, 1104
BseBI	CCWGG	3 cut(s)	201, 321, 530
BseDI	CCNNGG	3 cut(s)	200, 528, 966
BseGI	GGATG	2 cut(s)	6, 768
BseLI	CCNNNNNNNGG	1 cut(s)	511
BseMII	CTCAG	2 cut(s)	262, 1067
BseNI	ACTGG	2 cut(s)	603, 1104
BseRI	GAGGAG	1 cut(s)	165
BseSI	GKGCMC	1 cut(s)	671
BseXI	GCAGC	8 cut(s)	46, 298, 320, 463, 562, 692, 798, 1103
BseYI	CCCAGC	1 cut(s)	145
BsgI	GTGCAG	3 cut(s)	245, 321, 452
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	281
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	579
BslI	CCNNNNNNNGG	1 cut(s)	511
BsmAI	GTCTC	3 cut(s)	527, 616, 806
BsmFI	GGGAC	1 cut(s)	579
BsmI	GAATGC	1 cut(s)	871
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	806
Bsp1286I	GDGCHC	1 cut(s)	671
Bsp143I	GATC	5 cut(s)	109, 662, 725, 736, 1045
Bsp1720I	GCTNAGC	1 cut(s)	248
BspACI	CCGC	1 cut(s)	852
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	261, 1066
BspHI	TCATGA	1 cut(s)	1114
BspLI	GGNNCC	2 cut(s)	283, 947
BspMAI	CTGCAG	2 cut(s)	36, 316
BspPI	GGATC	3 cut(s)	670, 733, 744
BspT107I	GGYRCC	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	806
BsrBI	CCGCTC	1 cut(s)	854
BsrI	ACTGG	2 cut(s)	603, 1104
BssECI	CCNNGG	3 cut(s)	200, 528, 966
BssMI	GATC	5 cut(s)	109, 662, 725, 736, 1045
BssNI	GRCGYC	1 cut(s)	104
BssSI	CACGAG	1 cut(s)	116
Bst2BI	CACGAG	1 cut(s)	116
Bst2UI	CCWGG	3 cut(s)	201, 321, 530
Bst4CI	ACNGT	7 cut(s)	178, 362, 381, 510, 562, 950, 1149
Bst6I	CTCTTC	1 cut(s)	804
BstACI	GRCGYC	1 cut(s)	104
BstBAI	YACGTR	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	1079
BstDEI	CTNAG	4 cut(s)	248, 770, 857, 1053
BstF5I	GGATG	2 cut(s)	6, 768
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	5 cut(s)	112, 665, 728, 739, 1048
BstMAI	GTCTC	3 cut(s)	527, 616, 806
BstMBI	GATC	5 cut(s)	109, 662, 725, 736, 1045
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 308, 439, 448
BstNI	CCWGG	3 cut(s)	201, 321, 530
BstNSI	RCATGY	2 cut(s)	272, 844
BstPAI	GACNNNNGTC	1 cut(s)	379
BstSCI	CCNGG	3 cut(s)	199, 319, 528
BstSFI	CTRYAG	3 cut(s)	32, 312, 506
BstSLI	GKGCMC	1 cut(s)	671
BstV1I	GCAGC	8 cut(s)	46, 298, 320, 463, 562, 692, 798, 1103
BstV2I	GAAGAC	1 cut(s)	550
BstX2I	RGATCY	1 cut(s)	725
BstYI	RGATCY	1 cut(s)	725
BsuI	GTATCC	1 cut(s)	613
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	6, 768
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	321, 567
Cac8I	GCNNGC	1 cut(s)	1079
CciI	TCATGA	1 cut(s)	1114
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	2 cut(s)	374, 1102
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	4 cut(s)	266, 461, 558, 794
CviAII	CATG	4 cut(s)	269, 446, 841, 1115
CviQI	GTAC	4 cut(s)	266, 461, 558, 794
DdeI	CTNAG	4 cut(s)	248, 770, 857, 1053
DpnI	GATC	5 cut(s)	111, 664, 727, 738, 1047
DpnII	GATC	5 cut(s)	109, 662, 725, 736, 1045
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	804
EarI	CTCTTC	1 cut(s)	804
Eco31I	GGTCTC	1 cut(s)	806
Eco47I	GGWCC	2 cut(s)	374, 1102
Eco47III	AGCGCT	1 cut(s)	122
Eco57I	CTGAAG	3 cut(s)	72, 357, 873
EcoRII	CCWGG	3 cut(s)	199, 319, 528
FaeI	CATG	4 cut(s)	272, 449, 844, 1118
FaqI	GGGAC	1 cut(s)	579
FatI	CATG	4 cut(s)	268, 445, 840, 1114
FauNDI	CATATG	1 cut(s)	354
Fnu4HI	GCNGC	8 cut(s)	35, 309, 312, 452, 576, 706, 787, 1092
FokI	GGATG	1 cut(s)	775
Fsp4HI	GCNGC	8 cut(s)	35, 309, 312, 452, 576, 706, 787, 1092
FspBI	CTAG	3 cut(s)	65, 539, 1007
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	8 cut(s)	35, 309, 312, 452, 576, 706, 787, 1092
GsaI	CCCAGC	1 cut(s)	149
GsuI	CTGGAG	2 cut(s)	218, 539
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	38
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	1 cut(s)	123
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	4 cut(s)	272, 449, 844, 1118
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HinfI	GANTC	9 cut(s)	56, 93, 196, 226, 256, 803, 975, 1031, 1051
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	2 cut(s)	703, 917
Hpy166II	GTNNAC	2 cut(s)	139, 700
Hpy188III	TCNNGA	6 cut(s)	14, 60, 235, 740, 1007, 1115
Hpy8I	GTNNAC	2 cut(s)	139, 700
HpyAV	CCTTC	4 cut(s)	154, 432, 716, 897
HpyCH4III	ACNGT	7 cut(s)	178, 362, 381, 510, 562, 950, 1149
HpyCH4IV	ACGT	1 cut(s)	264
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 308, 439, 448
HpyF3I	CTNAG	4 cut(s)	248, 770, 857, 1053
HpySE526I	ACGT	1 cut(s)	264
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	4 cut(s)	272, 449, 844, 1118
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	5 cut(s)	109, 662, 725, 736, 1045
LmnI	GCTCC	2 cut(s)	152, 1173
Lsp1109I	GCAGC	8 cut(s)	46, 298, 320, 463, 562, 692, 798, 1103
LweI	GCATC	4 cut(s)	31, 70, 930, 1117
MaeI	CTAG	3 cut(s)	65, 539, 1007
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	905
MalI	GATC	5 cut(s)	111, 664, 727, 738, 1047
MbiI	CCGCTC	1 cut(s)	854
MboI	GATC	5 cut(s)	109, 662, 725, 736, 1045
MboII	GAAGA	4 cut(s)	65, 555, 821, 1125
MflI	RGATCY	1 cut(s)	725
MhlI	GDGCHC	1 cut(s)	671
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	294, 423, 1108
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	87, 235, 1045
MnlI	CCTC	6 cut(s)	21, 143, 451, 719, 724, 961
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	1038
MslI	CAYNNNNRTG	2 cut(s)	267, 402
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	145, 311, 705
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	3 cut(s)	201, 321, 530
Mva1269I	GAATGC	1 cut(s)	871
MvaI	CCWGG	3 cut(s)	201, 321, 530
MwoI	GCNNNNNNNGC	4 cut(s)	161, 308, 439, 448
NdeI	CATATG	1 cut(s)	354
NdeII	GATC	5 cut(s)	109, 662, 725, 736, 1045
NlaIII	CATG	4 cut(s)	272, 449, 844, 1118
NlaIV	GGNNCC	2 cut(s)	283, 947
NmuCI	GTSAC	1 cut(s)	905
NspI	RCATGY	2 cut(s)	272, 844
PagI	TCATGA	1 cut(s)	1114
PciI	ACATGT	1 cut(s)	840
PctI	GAATGC	1 cut(s)	871
PfeI	GAWTC	6 cut(s)	56, 196, 256, 803, 975, 1031
PkrI	GCNGC	8 cut(s)	36, 310, 313, 453, 577, 707, 788, 1093
PleI	GAGTC	3 cut(s)	87, 234, 1045
PpsI	GAGTC	3 cut(s)	87, 234, 1045
Ppu21I	YACGTR	1 cut(s)	265
PscI	ACATGT	1 cut(s)	840
PshAI	GACNNNNGTC	1 cut(s)	379
PsiI	TTATAA	1 cut(s)	780
Psp6I	CCWGG	3 cut(s)	199, 319, 528
PspFI	CCCAGC	1 cut(s)	145
PspGI	CCWGG	3 cut(s)	199, 319, 528
PspN4I	GGNNCC	2 cut(s)	283, 947
PspPI	GGNCC	2 cut(s)	374, 1102
PstI	CTGCAG	2 cut(s)	36, 316
PsuI	RGATCY	1 cut(s)	725
PvuII	CAGCTG	3 cut(s)	145, 311, 705
RsaI	GTAC	4 cut(s)	267, 462, 559, 795
RsaNI	GTAC	4 cut(s)	266, 461, 558, 794
RseI	CAYNNNNRTG	2 cut(s)	267, 402
SaqAI	TTAA	1 cut(s)	1038
SatI	GCNGC	8 cut(s)	35, 309, 312, 452, 576, 706, 787, 1092
Sau3AI	GATC	5 cut(s)	109, 662, 725, 736, 1045
Sau96I	GGNCC	2 cut(s)	374, 1102
SchI	GAGTC	3 cut(s)	87, 235, 1045
ScrFI	CCNGG	3 cut(s)	201, 321, 530
SduI	GDGCHC	1 cut(s)	671
SfaNI	GCATC	4 cut(s)	31, 70, 930, 1117
SfcI	CTRYAG	3 cut(s)	32, 312, 506
SinI	GGWCC	2 cut(s)	374, 1102
SmiMI	CAYNNNNRTG	2 cut(s)	267, 402
SmlI	CTYRAG	3 cut(s)	455, 492, 1065
SmoI	CTYRAG	3 cut(s)	455, 492, 1065
SpeI	ACTAGT	1 cut(s)	64
Sse9I	AATT	3 cut(s)	294, 423, 1108
SsiI	CCGC	1 cut(s)	852
SspMI	CTAG	3 cut(s)	65, 539, 1007
StyD4I	CCNGG	3 cut(s)	199, 319, 528
TaaI	ACNGT	7 cut(s)	178, 362, 381, 510, 562, 950, 1149
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	486
TasI	AATT	3 cut(s)	294, 423, 1108
TfiI	GAWTC	6 cut(s)	56, 196, 256, 803, 975, 1031
Tru1I	TTAA	1 cut(s)	1038
Tru9I	TTAA	1 cut(s)	1038
TscAI	CASTG	2 cut(s)	321, 567
TseFI	GTSAC	1 cut(s)	905
TseI	GCWGC	8 cut(s)	34, 308, 311, 451, 575, 705, 786, 1091
Tsp45I	GTSAC	1 cut(s)	905
TspDTI	ATGAA	5 cut(s)	115, 197, 371, 380, 420
TspRI	CASTG	2 cut(s)	321, 567
VpaK11BI	GGWCC	2 cut(s)	374, 1102
XapI	RAATTY	1 cut(s)	1108
XbaI	TCTAGA	1 cut(s)	1006
XceI	RCATGY	2 cut(s)	272, 844
XcmI	CCANNNNNNNNNTGG	1 cut(s)	96
XspI	CTAG	3 cut(s)	65, 539, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.