Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003866

Physical Location & Seq

Genomic Coordinates Forward (+)

29909520 .. 29910950

Gene Structure 1431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0292400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAAAAGACAAAGGCCTCCAAAATATCCATTGCACTATGTGGTTCACAATTTAGTGAGATGCGAGCCCTCATTGGCACTGCTCCAGGCTCTATCTTTCTTCACAATTTCCCTAACAATGCCCAATGCAAACAAGCTTTACTTATTAGGCGTAGGCCCTCCTGCTGCATCAGAAAGCAAAGCACACCAACAACCAGAAGCAGCAGCAGCAGCCTCAAAACCACCTGGCCATCCCTCTCATTTTCACTTTTCGGTTCCGGTTTCGTCCTCGGTCCTCTGATTGATGGAATCCATTCAAGGGTAGAACTTGTGGTGTACCAAAATGGCTCAATCAATATTGGTCCTCTTCACACAAACGTCTGGGTTCCCGTCTTACTTGGTCTGTTCTACTGCACTGTCGGGTTGCTTCAACTCTTCTTGGATGAAAGGGCCTCCTTAAAGATTCCAGAGGGAAACCACCAGAAAATGCTTGCTTCTTTATTAGCACTCGTGCTATTTATAGAGTTGAGCGCTGAGATGTATAAAGCAGGCGTCGCAGACAATATAGAAGCATACATACTATTTGCAGCGGCCGAGTTTATATGGTTTTCTGTGGATCGGACGTGGTTCGGCTTCCTCCTCGCAAGCATAGTTGGTCTGGCCAGCCCGCTGGCCGAGATACCCTTAATAAAGTTCTTCAACCTCTGGTATTATCCGCAAGCGAATATCGAAATCTTTGGCCAGGGCCTGGTGACTTGGACACTCACTTGCTATTTTGTTTACACGCTGTTTCTGATCAATTTTTCACGCTGGCTGAAATCAGTGATCAGTTCTACTAATACGGAGAACAAGTCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

279

Amino Acids

31.07

Weight (kDa)

9.03

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
INSIG	PF07281	81 - 225	1.4e-06	Insulin-induced protein (INSIG)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240
fragaria_vesca	FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990
malus_domestica	MD12G1001900.v1.1 MD14G1001600.v1.1
prunus_persica	Prupe.7G001700_v2.0.a1
pyrus_communis	pycom12g00160 pycom49g00110
rosa_chinensis	RchiOBHm_Chr3g0497321
rosa_laevigata	RLG00000022467
rosa_multiflora	Rmu_sc0001329.1_g000016
rosa_roxburghii	Rroxscaffold_6G00388110
rosa_rugosa	Rorug03G0292200 Rorug03G0292300 Rorug03G0292400 Rorug03G0292500
rosa_samantha	Rh3AG335900 Rh3BG374100 Rh3CG370000 Rh3DG371000
rosa_wichuraiana	Rw3G029540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	727
AciI	CCGC	3 cut(s)	569, 647, 695
AclWI	GGATC	1 cut(s)	603
AcoI	YGGCCR	5 cut(s)	227, 570, 639, 651, 718
AcyI	GRCGYC	1 cut(s)	531
AdeI	CACNNNGTG	1 cut(s)	41
AfaI	GTAC	1 cut(s)	317
AfeI	AGCGCT	1 cut(s)	511
AfiI	CCNNNNNNNGG	2 cut(s)	298, 727
AgsI	TTSAA	3 cut(s)	297, 410, 679
AjiI	CACGTC	1 cut(s)	603
AjnI	CCWGG	4 cut(s)	85, 224, 720, 726
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
AlwI	GGATC	1 cut(s)	603
AlwNI	CAGNNNCTG	1 cut(s)	727
Aor51HI	AGCGCT	1 cut(s)	511
AoxI	GGCC	9 cut(s)	15, 155, 227, 429, 570, 639, 651, 718, 724
ApeKI	GCWGC	6 cut(s)	165, 201, 204, 207, 210, 566
Asp700I	GAANNNNTTC	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	512
AspS9I	GGNCC	5 cut(s)	156, 272, 341, 429, 724
AsuHPI	GGTGA	1 cut(s)	742
AvaII	GGWCC	2 cut(s)	272, 341
BalI	TGGCCA	3 cut(s)	229, 641, 720
BanII	GRGCYC	1 cut(s)	70
BarI	GAAGNNNNNNTAC	2 cut(s)	540, 572
BauI	CACGAG	1 cut(s)	488
BbvI	GCAGC	6 cut(s)	152, 213, 216, 219, 222, 578
BccI	CCATC	2 cut(s)	238, 278
BciT130I	CCWGG	4 cut(s)	87, 226, 722, 728
BclI	TGATCA	2 cut(s)	774, 804
BfoI	RGCGCY	1 cut(s)	513
BisI	GCNGC	7 cut(s)	166, 202, 205, 208, 211, 567, 570
BlsI	GCNGC	7 cut(s)	167, 203, 206, 209, 212, 568, 571
Bme1390I	CCNGG	4 cut(s)	87, 226, 722, 728
Bme18I	GGWCC	2 cut(s)	272, 341
BmgBI	CACGTC	1 cut(s)	603
BmgT120I	GGNCC	5 cut(s)	156, 272, 341, 429, 724
BmiI	GGNNCC	2 cut(s)	256, 366
BmrFI	CCNGG	4 cut(s)	87, 226, 722, 728
BmsI	GCATC	2 cut(s)	51, 177
BpmI	CTGGAG	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	531
BsaJI	CCNNGG	2 cut(s)	268, 721
BsaWI	WCCGGW	1 cut(s)	257
BsaXI	ACNNNNNCTCC	1 cut(s)	815
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 727
Bse3DI	GCAATG	1 cut(s)	30
BseBI	CCWGG	4 cut(s)	87, 226, 722, 728
BseDI	CCNNGG	2 cut(s)	268, 721
BseGI	GGATG	2 cut(s)	230, 427
BseLI	CCNNNNNNNGG	2 cut(s)	298, 727
BseMI	GCAATG	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	504
BseRI	GAGGAG	1 cut(s)	608
BseX3I	CGGCCG	1 cut(s)	570
BseXI	GCAGC	6 cut(s)	152, 213, 216, 219, 222, 578
BsgI	GTGCAG	1 cut(s)	376
Bsh1285I	CGRYCG	1 cut(s)	573
BshFI	GGCC	9 cut(s)	17, 157, 229, 431, 572, 641, 653, 720, 726
BsiEI	CGRYCG	1 cut(s)	573
BsiSI	CCGG	1 cut(s)	258
BslI	CCNNNNNNNGG	2 cut(s)	298, 727
BsnI	GGCC	9 cut(s)	17, 157, 229, 431, 572, 641, 653, 720, 726
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	595, 774, 804
BspACI	CCGC	3 cut(s)	569, 647, 695
BspANI	GGCC	9 cut(s)	17, 157, 229, 431, 572, 641, 653, 720, 726
BspCNI	CTCAG	1 cut(s)	505
BspLI	GGNNCC	2 cut(s)	256, 366
BspPI	GGATC	1 cut(s)	603
BsrDI	GCAATG	1 cut(s)	30
BssECI	CCNNGG	2 cut(s)	268, 721
BssMI	GATC	3 cut(s)	595, 774, 804
BssNI	GRCGYC	1 cut(s)	531
BssSI	CACGAG	1 cut(s)	488
Bst2BI	CACGAG	1 cut(s)	488
Bst2UI	CCWGG	4 cut(s)	87, 226, 722, 728
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	2 cut(s)	351, 419
BstACI	GRCGYC	1 cut(s)	531
BstC8I	GCNNGC	9 cut(s)	66, 471, 529, 625, 643, 647, 651, 699, 791
BstDEI	CTNAG	2 cut(s)	513, 837
BstF5I	GGATG	2 cut(s)	230, 427
BstH2I	RGCGCY	1 cut(s)	513
BstHHI	GCGC	1 cut(s)	512
BstKTI	GATC	3 cut(s)	598, 777, 807
BstMBI	GATC	3 cut(s)	595, 774, 804
BstMCI	CGRYCG	1 cut(s)	573
BstMWI	GCNNNNNNNGC	3 cut(s)	207, 210, 533
BstNI	CCWGG	4 cut(s)	87, 226, 722, 728
BstSCI	CCNGG	4 cut(s)	85, 224, 720, 726
BstV1I	GCAGC	6 cut(s)	152, 213, 216, 219, 222, 578
BstXI	CCANNNNNNTGG	1 cut(s)	649
BstZI	CGGCCG	1 cut(s)	570
BsuRI	GGCC	9 cut(s)	17, 157, 229, 431, 572, 641, 653, 720, 726
BtrI	CACGTC	1 cut(s)	603
BtsCI	GGATG	2 cut(s)	230, 427
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	3 cut(s)	78, 393, 807
Cac8I	GCNNGC	9 cut(s)	66, 471, 529, 625, 643, 647, 651, 699, 791
CaiI	CAGNNNCTG	1 cut(s)	727
CfoI	GCGC	1 cut(s)	512
Cfr13I	GGNCC	5 cut(s)	156, 272, 341, 429, 724
CseI	GACGC	1 cut(s)	520
Csp6I	GTAC	1 cut(s)	316
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	2 cut(s)	513, 837
DpnI	GATC	3 cut(s)	597, 776, 806
DpnII	GATC	3 cut(s)	595, 774, 804
DraIII	CACNNNGTG	1 cut(s)	41
EaeI	YGGCCR	5 cut(s)	227, 570, 639, 651, 718
EagI	CGGCCG	1 cut(s)	570
Eam1104I	CTCTTC	2 cut(s)	351, 419
EarI	CTCTTC	2 cut(s)	351, 419
EclXI	CGGCCG	1 cut(s)	570
Eco147I	AGGCCT	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	70
Eco47I	GGWCC	2 cut(s)	272, 341
Eco47III	AGCGCT	1 cut(s)	511
Eco52I	CGGCCG	1 cut(s)	570
EcoO109I	RGGNCCY	3 cut(s)	156, 429, 724
EcoRII	CCWGG	4 cut(s)	85, 224, 720, 726
EcoT38I	GRGCYC	1 cut(s)	70
FaiI	YATR	9 cut(s)	40, 500, 522, 545, 553, 557, 581, 583, 629
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FauI	CCCGC	1 cut(s)	654
FbaI	TGATCA	2 cut(s)	774, 804
Fnu4HI	GCNGC	7 cut(s)	166, 202, 205, 208, 211, 567, 570
FokI	GGATG	2 cut(s)	217, 434
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	7 cut(s)	166, 202, 205, 208, 211, 567, 570
GlaI	GCGC	1 cut(s)	511
GluI	GCNGC	7 cut(s)	166, 202, 205, 208, 211, 567, 570
GsuI	CTGGAG	1 cut(s)	69
HaeII	RGCGCY	1 cut(s)	513
HaeIII	GGCC	9 cut(s)	17, 157, 229, 431, 572, 641, 653, 720, 726
HapII	CCGG	1 cut(s)	258
HgaI	GACGC	1 cut(s)	520
HhaI	GCGC	1 cut(s)	512
Hin1I	GRCGYC	1 cut(s)	531
Hin6I	GCGC	1 cut(s)	510
HinP1I	GCGC	1 cut(s)	510
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	2 cut(s)	288, 442
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	1 cut(s)	742
Hpy166II	GTNNAC	3 cut(s)	47, 316, 760
Hpy188I	TCNGA	4 cut(s)	173, 279, 600, 774
Hpy188III	TCNNGA	1 cut(s)	446
Hpy8I	GTNNAC	3 cut(s)	47, 316, 760
Hpy99I	CGWCG	1 cut(s)	536
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	2 cut(s)	357, 602
HpyCH4V	TGCA	5 cut(s)	35, 129, 168, 393, 566
HpyF10VI	GCNNNNNNNGC	3 cut(s)	207, 210, 533
HpyF3I	CTNAG	2 cut(s)	513, 837
HpySE526I	ACGT	2 cut(s)	357, 602
Hsp92I	GRCGYC	1 cut(s)	531
HspAI	GCGC	1 cut(s)	510
Ksp22I	TGATCA	2 cut(s)	774, 804
Kzo9I	GATC	3 cut(s)	595, 774, 804
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	6 cut(s)	152, 213, 216, 219, 222, 578
LweI	GCATC	2 cut(s)	51, 177
MaeII	ACGT	2 cut(s)	357, 602
MaeIII	GTNAC	1 cut(s)	730
MalI	GATC	3 cut(s)	597, 776, 806
MboI	GATC	3 cut(s)	595, 774, 804
MboII	GAAGA	4 cut(s)	92, 338, 406, 667
MhlI	GDGCHC	1 cut(s)	70
MlsI	TGGCCA	3 cut(s)	229, 641, 720
MluCI	AATT	3 cut(s)	50, 106, 778
MluNI	TGGCCA	3 cut(s)	229, 641, 720
Mox20I	TGGCCA	3 cut(s)	229, 641, 720
MroXI	GAANNNNTTC	1 cut(s)	292
MscI	TGGCCA	3 cut(s)	229, 641, 720
MseI	TTAA	2 cut(s)	437, 665
Msp20I	TGGCCA	3 cut(s)	229, 641, 720
MspA1I	CMGCKG	2 cut(s)	569, 649
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	4 cut(s)	87, 226, 722, 728
MvaI	CCWGG	4 cut(s)	87, 226, 722, 728
MwoI	GCNNNNNNNGC	3 cut(s)	207, 210, 533
NdeII	GATC	3 cut(s)	595, 774, 804
NlaIV	GGNNCC	2 cut(s)	256, 366
NmeAIII	GCCGAG	2 cut(s)	598, 679
NmuCI	GTSAC	1 cut(s)	730
PceI	AGGCCT	1 cut(s)	17
PdmI	GAANNNNTTC	1 cut(s)	292
PfeI	GAWTC	2 cut(s)	288, 442
PflMI	CCANNNNNTGG	1 cut(s)	727
PkrI	GCNGC	7 cut(s)	167, 203, 206, 209, 212, 568, 571
Psp6I	CCWGG	4 cut(s)	85, 224, 720, 726
PspGI	CCWGG	4 cut(s)	85, 224, 720, 726
PspN4I	GGNNCC	2 cut(s)	256, 366
PspPI	GGNCC	5 cut(s)	156, 272, 341, 429, 724
PstNI	CAGNNNCTG	1 cut(s)	727
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SaqAI	TTAA	2 cut(s)	437, 665
SatI	GCNGC	7 cut(s)	166, 202, 205, 208, 211, 567, 570
Sau3AI	GATC	3 cut(s)	595, 774, 804
Sau96I	GGNCC	5 cut(s)	156, 272, 341, 429, 724
ScrFI	CCNGG	4 cut(s)	87, 226, 722, 728
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	5 cut(s)	139, 227, 360, 605, 684
SfaNI	GCATC	2 cut(s)	51, 177
SinI	GGWCC	2 cut(s)	272, 341
Sse9I	AATT	3 cut(s)	50, 106, 778
SseBI	AGGCCT	1 cut(s)	17
SsiI	CCGC	3 cut(s)	569, 647, 695
SspI	AATATT	1 cut(s)	337
StuI	AGGCCT	1 cut(s)	17
StyD4I	CCNGG	4 cut(s)	85, 224, 720, 726
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	2 cut(s)	360, 605
TaqI	TCGA	1 cut(s)	708
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	3 cut(s)	50, 106, 778
TauI	GCSGC	1 cut(s)	572
TfiI	GAWTC	2 cut(s)	288, 442
Tru1I	TTAA	2 cut(s)	437, 665
Tru9I	TTAA	2 cut(s)	437, 665
TscAI	CASTG	3 cut(s)	85, 400, 807
TseFI	GTSAC	1 cut(s)	730
TseI	GCWGC	6 cut(s)	165, 201, 204, 207, 210, 566
Tsp45I	GTSAC	1 cut(s)	730
TspDTI	ATGAA	1 cut(s)	438
TspGWI	ACGGA	1 cut(s)	836
TspRI	CASTG	3 cut(s)	85, 400, 807
Van91I	CCANNNNNTGG	1 cut(s)	727
VpaK11BI	GGWCC	2 cut(s)	272, 341
XmnI	GAANNNNTTC	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.