Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0003866

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG374100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGATGTACCATCATCATCACCACCAGCACCAGCACCAACACCAGGCAAAGAACATCCATTCCTCTTCTTCAAGCAGGATGGCCATCCCTCCTGAAAGGCATCTGTTTCTGCAGCCGGAAACTTGCCCTGAAGATTCAGGACTAGTCCTTTCAACTGATGCCAAGCCAAGACTCAAATGGACGCCTGATCTCCATGAGCGCTTCATAGAAGCAGTAAACCAGCTGGGAGGAGCAGAGAAGGCTACTCCAAAAACAGTAATGAAACTTATGGGGATTCCAGGGCTTACATTATACCACCTAAAGAGTCATCTCCAGAAGTATAGGCTCAGCAAGAATCTGCACGTACATGCTAATAGTGGCACCACAAACAAAATTGGTGCAGTTGCAGCTGCAGTGCCAGGAGAAAGAATATCTGAAGTAAATGGAACTCATATGAACAGTATGAACATCGGACCACAGTCAAATAAAGGCTTACATATAAATGAAACACTACAAATGCAAATTGAAGTGCAGAGAAGGCTACATGAGCAGCTTGAGGTACAGCGACACTTACAACTTCGTATCGAAGCTCAAGGAAAATACCTACAGTCGGTGCTGGAGAAAGCCCAGGAAACACTAGGAAGACAGAACTTAGGTACAGTGGGACTTGAAGCTGCCAAAGTTCAACTCTCTGAACTGGTATCCAAAGTCTCCACCCAATGCTTGAACTCTGCATTTACAGAGCTAAAAGAAGTACAGGGATCGTGCCCCCAAAAGCAGCCCACCGATTGCTCTGTGGACAGCTGCCTCACCTCCTGTGAAGGATCTAAAAAGGATCAGGAGATACAAAACAATAGCAGGATGGGGCTAAGAGCTTATAATAGCAGCAGGGTACAAATGGAATCGGAAGAGACCATTCTACATCTGAAAGAGAATAACATGTTTGTTTCCACTCTAAGCAAGAATGCAGACCAAAGAATGTTTCCTTCAGAAGCAAGGTCTGGTGACTTGTCTATGAGCATCGGACTTGAACGAGAAAAATGGAACCGTAGCAACTGCAACTCCGAGGAAAGATTCAAAGCAAGAAACACAGATGACAGCTTTCTAGAGCATACAAACAATAAGGCAGCTTCAGTTAAAGTAGATCAGACTCAGAAAGTTTCTCAAGGATATAGCGTGCCATACTTTGCAGCAAAACTGGACCTAAATTCTCATGATGATATTGATGCTTCTTCAAGTTGCAAACAGTTTGACTTGAATGGTTTTAGCTGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

418

Amino Acids

46.96

Weight (kDa)

7.72

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	57 - 108	2.8e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	159 - 205	2e-24	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240
fragaria_vesca	FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990
malus_domestica	MD12G1001900.v1.1 MD14G1001600.v1.1
prunus_persica	Prupe.7G001700_v2.0.a1
pyrus_communis	pycom12g00160 pycom49g00110
rosa_chinensis	RchiOBHm_Chr3g0497321
rosa_laevigata	RLG00000022467
rosa_multiflora	Rmu_sc0001329.1_g000016
rosa_roxburghii	Rroxscaffold_6G00388110
rosa_rugosa	Rorug03G0292200 Rorug03G0292300 Rorug03G0292400 Rorug03G0292500
rosa_samantha	Rh3AG335900 Rh3BG374100 Rh3CG370000 Rh3DG371000
rosa_wichuraiana	Rw3G029540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	858
AccB1I	GGYRCC	1 cut(s)	359
AclWI	GGATC	3 cut(s)	748, 811, 822
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	1186
AcuI	CTGAAG	4 cut(s)	150, 435, 951, 1095
AcyI	GRCGYC	1 cut(s)	182
AfaI	GTAC	6 cut(s)	8, 345, 540, 637, 735, 873
AfeI	AGCGCT	1 cut(s)	200
AfiI	CCNNNNNNNGG	2 cut(s)	43, 589
AflIII	ACRYGT	1 cut(s)	918
AhlI	ACTAGT	1 cut(s)	142
AjnI	CCWGG	4 cut(s)	42, 277, 397, 606
AjuI	GAANNNNNNNTTGG	2 cut(s)	945, 977
AloI	GAACNNNNNNTCC	2 cut(s)	44, 76
Alw26I	GTCTC	2 cut(s)	694, 884
AlwI	GGATC	3 cut(s)	748, 811, 822
Aor51HI	AGCGCT	1 cut(s)	200
AoxI	GGCC	1 cut(s)	81
ApoI	RAATTY	1 cut(s)	1186
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	2 cut(s)	452, 1180
AsuHPI	GGTGA	3 cut(s)	11, 781, 995
AvaII	GGWCC	2 cut(s)	452, 1180
BaeGI	GKGCMC	1 cut(s)	749
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	628
BccI	CCATC	4 cut(s)	18, 73, 92, 835
BciT130I	CCWGG	4 cut(s)	44, 279, 399, 608
BciVI	GTATCC	1 cut(s)	691
BcoDI	GTCTC	2 cut(s)	694, 884
BcuI	ACTAGT	1 cut(s)	142
BfaI	CTAG	3 cut(s)	143, 617, 1085
BfmI	CTRYAG	3 cut(s)	110, 390, 584
BfoI	RGCGCY	1 cut(s)	202
BfuI	GTATCC	1 cut(s)	691
BlpI	GCTNAGC	1 cut(s)	326
Bme1390I	CCNGG	4 cut(s)	44, 279, 399, 608
Bme18I	GGWCC	2 cut(s)	452, 1180
BmgT120I	GGNCC	2 cut(s)	452, 1180
BmiI	GGNNCC	2 cut(s)	361, 1025
BmrFI	CCNGG	4 cut(s)	44, 279, 399, 608
BmsI	GCATC	4 cut(s)	109, 148, 1008, 1195
BoxI	GACNNNNGTC	1 cut(s)	457
BpiI	GAAGAC	1 cut(s)	628
BpmI	CTGGAG	2 cut(s)	296, 617
Bpu1102I	GCTNAGC	1 cut(s)	326
BpuEI	CTTGAG	3 cut(s)	554, 555, 1128
BsaAI	YACGTR	1 cut(s)	343
BsaBI	GATNNNNATC	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	182
BsaI	GGTCTC	1 cut(s)	884
BsaJI	CCNNGG	3 cut(s)	278, 606, 1044
BsaXI	ACNNNNNCTCC	2 cut(s)	1025, 1055
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 589
Bse1I	ACTGG	2 cut(s)	681, 1182
Bse8I	GATNNNNATC	1 cut(s)	83
BseBI	CCWGG	4 cut(s)	44, 279, 399, 608
BseDI	CCNNGG	3 cut(s)	278, 606, 1044
BseGI	GGATG	4 cut(s)	54, 84, 84, 846
BseJI	GATNNNNATC	1 cut(s)	83
BseLI	CCNNNNNNNGG	2 cut(s)	43, 589
BseMII	CTCAG	2 cut(s)	340, 1145
BseNI	ACTGG	2 cut(s)	681, 1182
BseRI	GAGGAG	1 cut(s)	243
BseSI	GKGCMC	1 cut(s)	749
BseYI	CCCAGC	1 cut(s)	223
BsgI	GTGCAG	3 cut(s)	323, 399, 530
BshFI	GGCC	1 cut(s)	83
BshNI	GGYRCC	1 cut(s)	359
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	657
BslI	CCNNNNNNNGG	2 cut(s)	43, 589
BsmAI	GTCTC	2 cut(s)	694, 884
BsmFI	GGGAC	1 cut(s)	657
BsmI	GAATGC	1 cut(s)	949
BsnI	GGCC	1 cut(s)	83
Bso31I	GGTCTC	1 cut(s)	884
Bsp1286I	GDGCHC	1 cut(s)	749
Bsp143I	GATC	5 cut(s)	187, 740, 803, 814, 1123
Bsp1720I	GCTNAGC	1 cut(s)	326
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	2 cut(s)	339, 1144
BspHI	TCATGA	1 cut(s)	1192
BspLI	GGNNCC	2 cut(s)	361, 1025
BspMAI	CTGCAG	2 cut(s)	114, 394
BspPI	GGATC	3 cut(s)	748, 811, 822
BspT107I	GGYRCC	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	884
BsrI	ACTGG	2 cut(s)	681, 1182
BssECI	CCNNGG	3 cut(s)	278, 606, 1044
BssMI	GATC	5 cut(s)	187, 740, 803, 814, 1123
BssNI	GRCGYC	1 cut(s)	182
Bst2UI	CCWGG	4 cut(s)	44, 279, 399, 608
Bst4CI	ACNGT	7 cut(s)	256, 440, 459, 588, 640, 1028, 1227
Bst6I	CTCTTC	2 cut(s)	70, 882
BstACI	GRCGYC	1 cut(s)	182
BstBAI	YACGTR	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	1157
BstDEI	CTNAG	5 cut(s)	326, 631, 848, 935, 1131
BstF5I	GGATG	4 cut(s)	54, 84, 84, 846
BstH2I	RGCGCY	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	5 cut(s)	190, 743, 806, 817, 1126
BstMAI	GTCTC	2 cut(s)	694, 884
BstMBI	GATC	5 cut(s)	187, 740, 803, 814, 1123
BstMWI	GCNNNNNNNGC	4 cut(s)	239, 386, 517, 526
BstNI	CCWGG	4 cut(s)	44, 279, 399, 608
BstNSI	RCATGY	2 cut(s)	350, 922
BstPAI	GACNNNNGTC	1 cut(s)	457
BstSCI	CCNGG	4 cut(s)	42, 277, 397, 606
BstSFI	CTRYAG	3 cut(s)	110, 390, 584
BstSLI	GKGCMC	1 cut(s)	749
BstV2I	GAAGAC	1 cut(s)	628
BstX2I	RGATCY	1 cut(s)	803
BstYI	RGATCY	1 cut(s)	803
BsuI	GTATCC	1 cut(s)	691
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	4 cut(s)	54, 84, 84, 846
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	2 cut(s)	399, 645
Cac8I	GCNNGC	1 cut(s)	1157
CciI	TCATGA	1 cut(s)	1192
CfoI	GCGC	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	452, 1180
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	6 cut(s)	7, 344, 539, 636, 734, 872
CviAII	CATG	5 cut(s)	194, 347, 524, 919, 1193
CviQI	GTAC	6 cut(s)	7, 344, 539, 636, 734, 872
DdeI	CTNAG	5 cut(s)	326, 631, 848, 935, 1131
DpnI	GATC	5 cut(s)	189, 742, 805, 816, 1125
DpnII	GATC	5 cut(s)	187, 740, 803, 814, 1123
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	70, 882
EarI	CTCTTC	2 cut(s)	70, 882
Eco31I	GGTCTC	1 cut(s)	884
Eco47I	GGWCC	2 cut(s)	452, 1180
Eco47III	AGCGCT	1 cut(s)	200
Eco57I	CTGAAG	4 cut(s)	150, 435, 951, 1095
EcoRII	CCWGG	4 cut(s)	42, 277, 397, 606
FaeI	CATG	5 cut(s)	197, 350, 527, 922, 1196
FaqI	GGGAC	1 cut(s)	657
FatI	CATG	5 cut(s)	193, 346, 523, 918, 1192
FauNDI	CATATG	1 cut(s)	432
FokI	GGATG	4 cut(s)	41, 71, 91, 853
FspBI	CTAG	3 cut(s)	143, 617, 1085
GlaI	GCGC	1 cut(s)	200
GsaI	CCCAGC	1 cut(s)	227
GsuI	CTGGAG	2 cut(s)	296, 617
HaeII	RGCGCY	1 cut(s)	202
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	116
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	201
Hin1I	GRCGYC	1 cut(s)	182
Hin1II	CATG	5 cut(s)	197, 350, 527, 922, 1196
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HinfI	GANTC	8 cut(s)	134, 171, 274, 304, 334, 881, 1053, 1129
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	3 cut(s)	11, 781, 995
Hpy166II	GTNNAC	2 cut(s)	217, 778
Hpy188III	TCNNGA	6 cut(s)	92, 138, 313, 818, 1085, 1193
Hpy8I	GTNNAC	2 cut(s)	217, 778
HpyAV	CCTTC	4 cut(s)	232, 510, 794, 975
HpyCH4III	ACNGT	7 cut(s)	256, 440, 459, 588, 640, 1028, 1227
HpyCH4IV	ACGT	1 cut(s)	342
HpyF10VI	GCNNNNNNNGC	4 cut(s)	239, 386, 517, 526
HpyF3I	CTNAG	5 cut(s)	326, 631, 848, 935, 1131
HpySE526I	ACGT	1 cut(s)	342
Hsp92I	GRCGYC	1 cut(s)	182
Hsp92II	CATG	5 cut(s)	197, 350, 527, 922, 1196
HspAI	GCGC	1 cut(s)	199
Kzo9I	GATC	5 cut(s)	187, 740, 803, 814, 1123
LmnI	GCTCC	2 cut(s)	230, 1251
LweI	GCATC	4 cut(s)	109, 148, 1008, 1195
MaeI	CTAG	3 cut(s)	143, 617, 1085
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	983
MalI	GATC	5 cut(s)	189, 742, 805, 816, 1125
MboI	GATC	5 cut(s)	187, 740, 803, 814, 1123
MboII	GAAGA	6 cut(s)	57, 60, 143, 633, 899, 1203
MflI	RGATCY	1 cut(s)	803
MhlI	GDGCHC	1 cut(s)	749
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	3 cut(s)	372, 501, 1186
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	3 cut(s)	165, 313, 1123
MnlI	CCTC	7 cut(s)	73, 99, 221, 529, 797, 802, 1039
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	1 cut(s)	1116
MslI	CAYNNNNRTG	2 cut(s)	345, 480
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	3 cut(s)	223, 389, 783
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	4 cut(s)	44, 279, 399, 608
Mva1269I	GAATGC	1 cut(s)	949
MvaI	CCWGG	4 cut(s)	44, 279, 399, 608
MwoI	GCNNNNNNNGC	4 cut(s)	239, 386, 517, 526
NdeI	CATATG	1 cut(s)	432
NdeII	GATC	5 cut(s)	187, 740, 803, 814, 1123
NlaIII	CATG	5 cut(s)	197, 350, 527, 922, 1196
NlaIV	GGNNCC	2 cut(s)	361, 1025
NmuCI	GTSAC	1 cut(s)	983
NspI	RCATGY	2 cut(s)	350, 922
PagI	TCATGA	1 cut(s)	1192
PciI	ACATGT	1 cut(s)	918
PctI	GAATGC	1 cut(s)	949
PfeI	GAWTC	5 cut(s)	134, 274, 334, 881, 1053
PleI	GAGTC	3 cut(s)	165, 312, 1123
PpsI	GAGTC	3 cut(s)	165, 312, 1123
Ppu21I	YACGTR	1 cut(s)	343
PscI	ACATGT	1 cut(s)	918
PshAI	GACNNNNGTC	1 cut(s)	457
PsiI	TTATAA	1 cut(s)	858
Psp6I	CCWGG	4 cut(s)	42, 277, 397, 606
PspFI	CCCAGC	1 cut(s)	223
PspGI	CCWGG	4 cut(s)	42, 277, 397, 606
PspN4I	GGNNCC	2 cut(s)	361, 1025
PspPI	GGNCC	2 cut(s)	452, 1180
PstI	CTGCAG	2 cut(s)	114, 394
PsuI	RGATCY	1 cut(s)	803
PvuII	CAGCTG	3 cut(s)	223, 389, 783
RsaI	GTAC	6 cut(s)	8, 345, 540, 637, 735, 873
RsaNI	GTAC	6 cut(s)	7, 344, 539, 636, 734, 872
RseI	CAYNNNNRTG	2 cut(s)	345, 480
SaqAI	TTAA	1 cut(s)	1116
Sau3AI	GATC	5 cut(s)	187, 740, 803, 814, 1123
Sau96I	GGNCC	2 cut(s)	452, 1180
SchI	GAGTC	3 cut(s)	165, 313, 1123
ScrFI	CCNGG	4 cut(s)	44, 279, 399, 608
SduI	GDGCHC	1 cut(s)	749
SfaNI	GCATC	4 cut(s)	109, 148, 1008, 1195
SfcI	CTRYAG	3 cut(s)	110, 390, 584
SinI	GGWCC	2 cut(s)	452, 1180
SmiMI	CAYNNNNRTG	2 cut(s)	345, 480
SmlI	CTYRAG	3 cut(s)	533, 570, 1143
SmoI	CTYRAG	3 cut(s)	533, 570, 1143
SpeI	ACTAGT	1 cut(s)	142
Sse9I	AATT	3 cut(s)	372, 501, 1186
SspMI	CTAG	3 cut(s)	143, 617, 1085
StyD4I	CCNGG	4 cut(s)	42, 277, 397, 606
TaaI	ACNGT	7 cut(s)	256, 440, 459, 588, 640, 1028, 1227
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	1 cut(s)	564
TasI	AATT	3 cut(s)	372, 501, 1186
TatI	WGTACW	1 cut(s)	733
TfiI	GAWTC	5 cut(s)	134, 274, 334, 881, 1053
Tru1I	TTAA	1 cut(s)	1116
Tru9I	TTAA	1 cut(s)	1116
TscAI	CASTG	2 cut(s)	399, 645
TseFI	GTSAC	1 cut(s)	983
Tsp45I	GTSAC	1 cut(s)	983
TspDTI	ATGAA	5 cut(s)	193, 275, 449, 458, 498
TspRI	CASTG	2 cut(s)	399, 645
VpaK11BI	GGWCC	2 cut(s)	452, 1180
XapI	RAATTY	1 cut(s)	1186
XbaI	TCTAGA	1 cut(s)	1084
XceI	RCATGY	2 cut(s)	350, 922
XcmI	CCANNNNNNNNNTGG	1 cut(s)	174
XspI	CTAG	3 cut(s)	143, 617, 1085

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.