Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003866

Physical Location & Seq

Genomic Coordinates Forward (+)

49194072 .. 49196765

Gene Structure 2694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45952

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGATGTACCATCATCATCACCACCAGCACCAACACCAGGCAAAGAACATCCATTCCTCTTCTTCAAGCAGGATGGCCATCCCTCCTGAAAGGCATCTGTTTCTGCAGCCGGAAACTTGCCCTGAAGATTCAGGACTAGTCCTTTCAACTGATGCCAAGCCAAGACTCAAATGGACGCCTGATCTCCACGAGCGCTTCATAGAAGCAGTAAACCAGCTGGGAGGAGCAGAGAAGGCTACTCCAAAAACAGTAATGAAACTTATGGGGATTCCAGGGCTTACATTATACCACCTAAAGAGTCATCTCCAGAAGTATAGGCTCAGCAAGAATCTGCACGTACATGCTAATAGTGGCACCACAAACAAAATTGGTGCAGTTGCAGCTGCAGTGCCAGGAGAAAGAATATCTGAAGTAAATGGAACTCATATGAACAGTATGAACATCGGACCACAGTCAAATAAAGGCTTACATATAAATGAAACACTACAAATGCAAATTGAAGTGCAGAGAAGGCTACATGAGCAGCTTGAGGTACAGCGACACTTACAACTTCGTATCGAAGCTCAAGGAAAATACCTACAGTCGGTGCTGGAGAAAGCCCAGGAGACACTAGGAAGACAGAACTTAGGTACAGTGGGACTTGAAGCTGCGAAAGTTCAACTCTCTGAACTGGTATCCAAAGTCTCCACCCAATGCTTGAACTCTGCATTTACAGAGCTAAAAGAAGTACAGGGATCGTGCCCCCAAAACCAGCCCACCGATTGCTCTGTGGACAGCTGCCTCACCTCCTGTGAAGGATCTAAAAAGGATCAGGAGATACAAAACAATAGCAGGATGGGGCTAAGAGCTTATAATAGCAGCAGGGTACTAATGGAATCTGAAGAGACCATTCTACATCTGAAAGAGAATAACATGTTTGTTTCCACTCTAAGCAAGAATGCAGACCAAAGAATGTTTCCTTCAGAAGCAAGGTCTGGTGACTTGTCTATGAGCATCGGACTTGAACGAGAAAAATGGAACCGTAGCAACTGCAACTCCGAGGAAAGATTCAAAGCAAGAAACACAGATGACAGCTTTCTAGAGCATACAAACAACAAGGCAGATTCAGTTAAAGTAGATCAGACTCAGAAAGTTTCTCAAGGATATAGCGTGCCATACTTTGCAGCAAAACTGGACCTAAATTCTCATGATGATATTGATGCTTCTTCAAGTTGCAAACAGTTTGACTTGAATGGTTTTAGCTGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

416

Amino Acids

46.71

Weight (kDa)

7.07

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	55 - 106	2.7e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	157 - 203	2e-24	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240
fragaria_vesca	FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990
malus_domestica	MD12G1001900.v1.1 MD14G1001600.v1.1
prunus_persica	Prupe.7G001700_v2.0.a1
pyrus_communis	pycom12g00160 pycom49g00110
rosa_chinensis	RchiOBHm_Chr3g0497321
rosa_laevigata	RLG00000022467
rosa_multiflora	Rmu_sc0001329.1_g000016
rosa_roxburghii	Rroxscaffold_6G00388110
rosa_rugosa	Rorug03G0292200 Rorug03G0292300 Rorug03G0292400 Rorug03G0292500
rosa_samantha	Rh3AG335900 Rh3BG374100 Rh3CG370000 Rh3DG371000
rosa_wichuraiana	Rw3G029540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	852
AccB1I	GGYRCC	1 cut(s)	353
AclWI	GGATC	3 cut(s)	742, 805, 816
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	1180
AcuI	CTGAAG	4 cut(s)	144, 429, 900, 945
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	6 cut(s)	8, 339, 534, 631, 729, 867
AfeI	AGCGCT	1 cut(s)	194
AfiI	CCNNNNNNNGG	2 cut(s)	37, 583
AflIII	ACRYGT	1 cut(s)	912
AhlI	ACTAGT	1 cut(s)	136
AjnI	CCWGG	4 cut(s)	36, 271, 391, 600
AjuI	GAANNNNNNNTTGG	2 cut(s)	939, 971
AloI	GAACNNNNNNTCC	2 cut(s)	38, 70
Alw26I	GTCTC	3 cut(s)	599, 688, 878
AlwI	GGATC	3 cut(s)	742, 805, 816
Aor51HI	AGCGCT	1 cut(s)	194
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	8 cut(s)	106, 380, 383, 523, 647, 777, 858, 1163
ApoI	RAATTY	1 cut(s)	1180
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	2 cut(s)	446, 1174
AsuHPI	GGTGA	3 cut(s)	11, 775, 989
AvaII	GGWCC	2 cut(s)	446, 1174
BaeGI	GKGCMC	1 cut(s)	743
BalI	TGGCCA	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	353
BauI	CACGAG	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	622
BbvI	GCAGC	8 cut(s)	118, 370, 392, 535, 634, 764, 870, 1175
BccI	CCATC	4 cut(s)	18, 67, 86, 829
BciT130I	CCWGG	4 cut(s)	38, 273, 393, 602
BciVI	GTATCC	1 cut(s)	685
BcoDI	GTCTC	3 cut(s)	599, 688, 878
BcuI	ACTAGT	1 cut(s)	136
BfaI	CTAG	3 cut(s)	137, 611, 1079
BfmI	CTRYAG	3 cut(s)	104, 384, 578
BfoI	RGCGCY	1 cut(s)	196
BfuI	GTATCC	1 cut(s)	685
BisI	GCNGC	8 cut(s)	107, 381, 384, 524, 648, 778, 859, 1164
BlpI	GCTNAGC	1 cut(s)	320
BlsI	GCNGC	8 cut(s)	108, 382, 385, 525, 649, 779, 860, 1165
Bme1390I	CCNGG	4 cut(s)	38, 273, 393, 602
Bme18I	GGWCC	2 cut(s)	446, 1174
BmgT120I	GGNCC	2 cut(s)	446, 1174
BmiI	GGNNCC	2 cut(s)	355, 1019
BmrFI	CCNGG	4 cut(s)	38, 273, 393, 602
BmsI	GCATC	4 cut(s)	103, 142, 1002, 1189
BoxI	GACNNNNGTC	1 cut(s)	451
BpiI	GAAGAC	1 cut(s)	622
BpmI	CTGGAG	2 cut(s)	290, 611
Bpu1102I	GCTNAGC	1 cut(s)	320
BpuEI	CTTGAG	3 cut(s)	548, 549, 1122
BsaAI	YACGTR	1 cut(s)	337
BsaBI	GATNNNNATC	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	878
BsaJI	CCNNGG	3 cut(s)	272, 600, 1038
BsaXI	ACNNNNNCTCC	2 cut(s)	1019, 1049
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 583
Bse1I	ACTGG	2 cut(s)	675, 1176
Bse8I	GATNNNNATC	1 cut(s)	77
BseBI	CCWGG	4 cut(s)	38, 273, 393, 602
BseDI	CCNNGG	3 cut(s)	272, 600, 1038
BseGI	GGATG	4 cut(s)	48, 78, 78, 840
BseJI	GATNNNNATC	1 cut(s)	77
BseLI	CCNNNNNNNGG	2 cut(s)	37, 583
BseMII	CTCAG	2 cut(s)	334, 1139
BseNI	ACTGG	2 cut(s)	675, 1176
BseRI	GAGGAG	1 cut(s)	237
BseSI	GKGCMC	1 cut(s)	743
BseXI	GCAGC	8 cut(s)	118, 370, 392, 535, 634, 764, 870, 1175
BseYI	CCCAGC	1 cut(s)	217
BsgI	GTGCAG	3 cut(s)	317, 393, 524
BshFI	GGCC	1 cut(s)	77
BshNI	GGYRCC	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	651
BslI	CCNNNNNNNGG	2 cut(s)	37, 583
BsmAI	GTCTC	3 cut(s)	599, 688, 878
BsmFI	GGGAC	1 cut(s)	651
BsmI	GAATGC	1 cut(s)	943
BsnI	GGCC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	878
Bsp1286I	GDGCHC	1 cut(s)	743
Bsp143I	GATC	5 cut(s)	181, 734, 797, 808, 1117
Bsp1720I	GCTNAGC	1 cut(s)	320
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	2 cut(s)	333, 1138
BspHI	TCATGA	1 cut(s)	1186
BspLI	GGNNCC	2 cut(s)	355, 1019
BspMAI	CTGCAG	2 cut(s)	108, 388
BspPI	GGATC	3 cut(s)	742, 805, 816
BspT107I	GGYRCC	1 cut(s)	353
BspTNI	GGTCTC	1 cut(s)	878
BsrI	ACTGG	2 cut(s)	675, 1176
BssECI	CCNNGG	3 cut(s)	272, 600, 1038
BssMI	GATC	5 cut(s)	181, 734, 797, 808, 1117
BssNI	GRCGYC	1 cut(s)	176
BssSI	CACGAG	1 cut(s)	188
Bst2BI	CACGAG	1 cut(s)	188
Bst2UI	CCWGG	4 cut(s)	38, 273, 393, 602
Bst4CI	ACNGT	7 cut(s)	250, 434, 453, 582, 634, 1022, 1221
Bst6I	CTCTTC	2 cut(s)	64, 876
BstACI	GRCGYC	1 cut(s)	176
BstBAI	YACGTR	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	1151
BstDEI	CTNAG	5 cut(s)	320, 625, 842, 929, 1125
BstF5I	GGATG	4 cut(s)	48, 78, 78, 840
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	5 cut(s)	184, 737, 800, 811, 1120
BstMAI	GTCTC	3 cut(s)	599, 688, 878
BstMBI	GATC	5 cut(s)	181, 734, 797, 808, 1117
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 380, 511, 520
BstNI	CCWGG	4 cut(s)	38, 273, 393, 602
BstNSI	RCATGY	2 cut(s)	344, 916
BstPAI	GACNNNNGTC	1 cut(s)	451
BstSCI	CCNGG	4 cut(s)	36, 271, 391, 600
BstSFI	CTRYAG	3 cut(s)	104, 384, 578
BstSLI	GKGCMC	1 cut(s)	743
BstV1I	GCAGC	8 cut(s)	118, 370, 392, 535, 634, 764, 870, 1175
BstV2I	GAAGAC	1 cut(s)	622
BstX2I	RGATCY	1 cut(s)	797
BstYI	RGATCY	1 cut(s)	797
BsuI	GTATCC	1 cut(s)	685
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	4 cut(s)	48, 78, 78, 840
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	2 cut(s)	393, 639
Cac8I	GCNNGC	1 cut(s)	1151
CciI	TCATGA	1 cut(s)	1186
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	2 cut(s)	446, 1174
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	6 cut(s)	7, 338, 533, 630, 728, 866
CviAII	CATG	4 cut(s)	341, 518, 913, 1187
CviQI	GTAC	6 cut(s)	7, 338, 533, 630, 728, 866
DdeI	CTNAG	5 cut(s)	320, 625, 842, 929, 1125
DpnI	GATC	5 cut(s)	183, 736, 799, 810, 1119
DpnII	GATC	5 cut(s)	181, 734, 797, 808, 1117
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	2 cut(s)	64, 876
EarI	CTCTTC	2 cut(s)	64, 876
Eco31I	GGTCTC	1 cut(s)	878
Eco47I	GGWCC	2 cut(s)	446, 1174
Eco47III	AGCGCT	1 cut(s)	194
Eco57I	CTGAAG	4 cut(s)	144, 429, 900, 945
EcoRII	CCWGG	4 cut(s)	36, 271, 391, 600
FaeI	CATG	4 cut(s)	344, 521, 916, 1190
FaqI	GGGAC	1 cut(s)	651
FatI	CATG	4 cut(s)	340, 517, 912, 1186
FauNDI	CATATG	1 cut(s)	426
Fnu4HI	GCNGC	8 cut(s)	107, 381, 384, 524, 648, 778, 859, 1164
FokI	GGATG	4 cut(s)	35, 65, 85, 847
Fsp4HI	GCNGC	8 cut(s)	107, 381, 384, 524, 648, 778, 859, 1164
FspBI	CTAG	3 cut(s)	137, 611, 1079
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	8 cut(s)	107, 381, 384, 524, 648, 778, 859, 1164
GsaI	CCCAGC	1 cut(s)	221
GsuI	CTGGAG	2 cut(s)	290, 611
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	1 cut(s)	195
Hin1I	GRCGYC	1 cut(s)	176
Hin1II	CATG	4 cut(s)	344, 521, 916, 1190
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HinfI	GANTC	9 cut(s)	128, 165, 268, 298, 328, 875, 1047, 1103, 1123
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	3 cut(s)	11, 775, 989
Hpy166II	GTNNAC	2 cut(s)	211, 772
Hpy188III	TCNNGA	6 cut(s)	86, 132, 307, 812, 1079, 1187
Hpy8I	GTNNAC	2 cut(s)	211, 772
HpyAV	CCTTC	4 cut(s)	226, 504, 788, 969
HpyCH4III	ACNGT	7 cut(s)	250, 434, 453, 582, 634, 1022, 1221
HpyCH4IV	ACGT	1 cut(s)	336
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 380, 511, 520
HpyF3I	CTNAG	5 cut(s)	320, 625, 842, 929, 1125
HpySE526I	ACGT	1 cut(s)	336
Hsp92I	GRCGYC	1 cut(s)	176
Hsp92II	CATG	4 cut(s)	344, 521, 916, 1190
HspAI	GCGC	1 cut(s)	193
Kzo9I	GATC	5 cut(s)	181, 734, 797, 808, 1117
LmnI	GCTCC	2 cut(s)	224, 1245
Lsp1109I	GCAGC	8 cut(s)	118, 370, 392, 535, 634, 764, 870, 1175
LweI	GCATC	4 cut(s)	103, 142, 1002, 1189
MaeI	CTAG	3 cut(s)	137, 611, 1079
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	977
MalI	GATC	5 cut(s)	183, 736, 799, 810, 1119
MboI	GATC	5 cut(s)	181, 734, 797, 808, 1117
MboII	GAAGA	6 cut(s)	51, 54, 137, 627, 893, 1197
MflI	RGATCY	1 cut(s)	797
MhlI	GDGCHC	1 cut(s)	743
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	3 cut(s)	366, 495, 1180
MluNI	TGGCCA	1 cut(s)	77
MlyI	GAGTC	3 cut(s)	159, 307, 1117
MnlI	CCTC	7 cut(s)	67, 93, 215, 523, 791, 796, 1033
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	1 cut(s)	1110
MslI	CAYNNNNRTG	2 cut(s)	339, 474
Msp20I	TGGCCA	1 cut(s)	77
MspA1I	CMGCKG	3 cut(s)	217, 383, 777
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	4 cut(s)	38, 273, 393, 602
Mva1269I	GAATGC	1 cut(s)	943
MvaI	CCWGG	4 cut(s)	38, 273, 393, 602
MwoI	GCNNNNNNNGC	4 cut(s)	233, 380, 511, 520
NdeI	CATATG	1 cut(s)	426
NdeII	GATC	5 cut(s)	181, 734, 797, 808, 1117
NlaIII	CATG	4 cut(s)	344, 521, 916, 1190
NlaIV	GGNNCC	2 cut(s)	355, 1019
NmuCI	GTSAC	1 cut(s)	977
NspI	RCATGY	2 cut(s)	344, 916
PagI	TCATGA	1 cut(s)	1186
PciI	ACATGT	1 cut(s)	912
PctI	GAATGC	1 cut(s)	943
PfeI	GAWTC	6 cut(s)	128, 268, 328, 875, 1047, 1103
PkrI	GCNGC	8 cut(s)	108, 382, 385, 525, 649, 779, 860, 1165
PleI	GAGTC	3 cut(s)	159, 306, 1117
PpsI	GAGTC	3 cut(s)	159, 306, 1117
Ppu21I	YACGTR	1 cut(s)	337
PscI	ACATGT	1 cut(s)	912
PshAI	GACNNNNGTC	1 cut(s)	451
PsiI	TTATAA	1 cut(s)	852
Psp6I	CCWGG	4 cut(s)	36, 271, 391, 600
PspFI	CCCAGC	1 cut(s)	217
PspGI	CCWGG	4 cut(s)	36, 271, 391, 600
PspN4I	GGNNCC	2 cut(s)	355, 1019
PspPI	GGNCC	2 cut(s)	446, 1174
PstI	CTGCAG	2 cut(s)	108, 388
PsuI	RGATCY	1 cut(s)	797
PvuII	CAGCTG	3 cut(s)	217, 383, 777
RsaI	GTAC	6 cut(s)	8, 339, 534, 631, 729, 867
RsaNI	GTAC	6 cut(s)	7, 338, 533, 630, 728, 866
RseI	CAYNNNNRTG	2 cut(s)	339, 474
SaqAI	TTAA	1 cut(s)	1110
SatI	GCNGC	8 cut(s)	107, 381, 384, 524, 648, 778, 859, 1164
Sau3AI	GATC	5 cut(s)	181, 734, 797, 808, 1117
Sau96I	GGNCC	2 cut(s)	446, 1174
SchI	GAGTC	3 cut(s)	159, 307, 1117
ScrFI	CCNGG	4 cut(s)	38, 273, 393, 602
SduI	GDGCHC	1 cut(s)	743
SfaNI	GCATC	4 cut(s)	103, 142, 1002, 1189
SfcI	CTRYAG	3 cut(s)	104, 384, 578
SinI	GGWCC	2 cut(s)	446, 1174
SmiMI	CAYNNNNRTG	2 cut(s)	339, 474
SmlI	CTYRAG	3 cut(s)	527, 564, 1137
SmoI	CTYRAG	3 cut(s)	527, 564, 1137
SpeI	ACTAGT	1 cut(s)	136
Sse9I	AATT	3 cut(s)	366, 495, 1180
SspMI	CTAG	3 cut(s)	137, 611, 1079
StyD4I	CCNGG	4 cut(s)	36, 271, 391, 600
TaaI	ACNGT	7 cut(s)	250, 434, 453, 582, 634, 1022, 1221
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	1 cut(s)	558
TasI	AATT	3 cut(s)	366, 495, 1180
TatI	WGTACW	1 cut(s)	727
TfiI	GAWTC	6 cut(s)	128, 268, 328, 875, 1047, 1103
Tru1I	TTAA	1 cut(s)	1110
Tru9I	TTAA	1 cut(s)	1110
TscAI	CASTG	2 cut(s)	393, 639
TseFI	GTSAC	1 cut(s)	977
TseI	GCWGC	8 cut(s)	106, 380, 383, 523, 647, 777, 858, 1163
Tsp45I	GTSAC	1 cut(s)	977
TspDTI	ATGAA	5 cut(s)	187, 269, 443, 452, 492
TspRI	CASTG	2 cut(s)	393, 639
VpaK11BI	GGWCC	2 cut(s)	446, 1174
XapI	RAATTY	1 cut(s)	1180
XbaI	TCTAGA	1 cut(s)	1078
XceI	RCATGY	2 cut(s)	344, 916
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XspI	CTAG	3 cut(s)	137, 611, 1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.