Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003866

Physical Location & Seq

Genomic Coordinates Reverse (-)

29911313 .. 29912314

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0292500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCGTCTCTCACAACCTCCTGGTTGCCCAAAACCCCAATTCCTTCTCCTCAAATCCCAGCGAAATCCCACCAGTCCCCACAACTTATGCTTGTAAAACGGTGCCGTTTAACTCCTCAAAGAAGGATCTTTCTGGGTTCCGCCGTTAGAGCTTCCAACGCAAGCGCTGCCGCCGAGTCTTCTTCTTCTTCTCCGGGACTCTACTCGGCCAAGCAATTCGAGCTCACAGTTCCCAACGTCGATTTGGTTCTCGAGGACGTCCGCCCCTATCTCATCGCCGATGGTGGAAACGTCGACGTTGTGTCCGTCGAAGACGGCGTCGTTTCTCTCAAGCTCCAAGGGGCTTGTGGAAGCTGTCCTAGCTCAACAACGACCATGAAAATGGGGATTGAACGAGTGCTTAAAGAAAAGTTTGGAGATGCACTCAAGGATATTCAACAAGTCTTTGATGAAGAGAACAGAGAGACCACAGTTGAGGCAGTGAATGGTCATCTCGACATATTGAGGCCGGCGATCAAGAACTTTGGTGGAAGTGTTGAAGTGTTATCAGTTGAAGGTGGGGATTGCCAAGTAAAATATGTGGGGCCTGACTCCATTGGATCAGGAATCAGAGCAGCTATTAAGGAGAAGTTCCCAGATATTGTCAATGTTGTGTTTACAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

221

Amino Acids

23.59

Weight (kDa)

5.77

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NifU	PF01106	81 - 140	1.1e-23	NifU-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT3G04030 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240 AT5G18240
fragaria_vesca	FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990 FvH4_1g27990
malus_domestica	MD12G1001900.v1.1 MD14G1001600.v1.1
prunus_persica	Prupe.7G001700_v2.0.a1
pyrus_communis	pycom12g00160 pycom49g00110
rosa_chinensis	RchiOBHm_Chr3g0497321
rosa_laevigata	RLG00000022467
rosa_multiflora	Rmu_sc0001329.1_g000016
rosa_roxburghii	Rroxscaffold_6G00388110
rosa_rugosa	Rorug03G0292200 Rorug03G0292300 Rorug03G0292400 Rorug03G0292500
rosa_samantha	Rh3AG335900 Rh3BG374100 Rh3CG370000 Rh3DG371000
rosa_wichuraiana	Rw3G029540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	102
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	3 cut(s)	141, 171, 262
AclWI	GGATC	2 cut(s)	134, 607
AcoI	YGGCCR	1 cut(s)	207
AcyI	GRCGYC	3 cut(s)	5, 258, 318
AfeI	AGCGCT	1 cut(s)	166
AgsI	TTSAA	4 cut(s)	392, 437, 539, 554
AhdI	GACNNNNNGTC	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	6 cut(s)	152, 223, 334, 354, 363, 617
AluI	AGCT	6 cut(s)	152, 223, 334, 354, 363, 617
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	2 cut(s)	12, 458
AlwI	GGATC	2 cut(s)	134, 607
Ama87I	CYCGRG	1 cut(s)	251
Aor51HI	AGCGCT	1 cut(s)	166
AoxI	GGCC	3 cut(s)	207, 506, 584
ApeKI	GCWGC	2 cut(s)	167, 614
ArsI	GACNNNNNNTTYG	2 cut(s)	303, 335
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	584
AsuC2I	CCSGG	1 cut(s)	195
AvaI	CYCGRG	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	225
BbsI	GAAGAC	2 cut(s)	171, 318
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	154, 626
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	3 cut(s)	90, 128, 331
BciT130I	CCWGG	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	2 cut(s)	12, 458
BfaI	CTAG	1 cut(s)	360
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	3 cut(s)	168, 171, 615
BlsI	GCNGC	3 cut(s)	169, 172, 616
Bme1390I	CCNGG	2 cut(s)	22, 195
BmeRI	GACNNNNNGTC	1 cut(s)	301
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	3 cut(s)	104, 139, 585
BmrFI	CCNGG	2 cut(s)	22, 195
BmsI	GCATC	1 cut(s)	409
BpiI	GAAGAC	2 cut(s)	171, 318
BplI	GAGNNNNNCTC	2 cut(s)	408, 440
BpuEI	CTTGAG	2 cut(s)	314, 410
BpuMI	CCSGG	1 cut(s)	195
BsaHI	GRCGYC	3 cut(s)	5, 258, 318
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	337
Bse118I	RCCGGY	1 cut(s)	508
Bse1I	ACTGG	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	337
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	2 cut(s)	39, 105
BseXI	GCAGC	2 cut(s)	154, 626
BseYI	CCCAGC	1 cut(s)	58
BshFI	GGCC	3 cut(s)	209, 508, 586
BshNI	GGYRCC	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	225
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	2 cut(s)	194, 509
BslFI	GGGAC	2 cut(s)	61, 210
BsmAI	GTCTC	2 cut(s)	12, 458
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	2 cut(s)	61, 210
BsnI	GGCC	3 cut(s)	209, 508, 586
Bso31I	GGTCTC	1 cut(s)	458
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	3 cut(s)	126, 513, 599
BspACI	CCGC	3 cut(s)	141, 171, 262
BspANI	GGCC	3 cut(s)	209, 508, 586
BspLI	GGNNCC	3 cut(s)	104, 139, 585
BspPI	GGATC	2 cut(s)	134, 607
BspT107I	GGYRCC	1 cut(s)	102
BspTNI	GGTCTC	1 cut(s)	458
BsrFI	RCCGGY	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	73
BssAI	RCCGGY	1 cut(s)	508
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	3 cut(s)	126, 513, 599
BssNI	GRCGYC	3 cut(s)	5, 258, 318
BssT1I	CCWWGG	1 cut(s)	337
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	3 cut(s)	102, 229, 472
Bst6I	CTCTTC	1 cut(s)	447
BstACI	GRCGYC	3 cut(s)	5, 258, 318
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	163, 510
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	3 cut(s)	129, 516, 602
BstMAI	GTCTC	2 cut(s)	12, 458
BstMBI	GATC	3 cut(s)	126, 513, 599
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 158, 167, 220, 360
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	2 cut(s)	20, 193
BstV1I	GCAGC	2 cut(s)	154, 626
BstV2I	GAAGAC	2 cut(s)	171, 318
BstX2I	RGATCY	1 cut(s)	126
BstXI	CCANNNNNNTGG	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	126
BsuRI	GGCC	3 cut(s)	209, 508, 586
BtgZI	GCGATG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	2 cut(s)	163, 510
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	508
Cfr13I	GGNCC	1 cut(s)	584
CseI	GACGC	1 cut(s)	307
CviAII	CATG	1 cut(s)	376
DpnI	GATC	3 cut(s)	128, 515, 601
DpnII	GATC	3 cut(s)	126, 513, 599
DriI	GACNNNNNGTC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	447
Eam1105I	GACNNNNNGTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	447
EciI	GGCGGA	2 cut(s)	130, 251
Ecl136II	GAGCTC	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	225
Eco31I	GGTCTC	1 cut(s)	458
Eco47III	AGCGCT	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	223
Eco88I	CYCGRG	1 cut(s)	251
EcoICRI	GAGCTC	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	20
EcoT14I	CCWWGG	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	337
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	1 cut(s)	379
FaiI	YATR	4 cut(s)	89, 377, 500, 579
FaqI	GGGAC	2 cut(s)	61, 210
FatI	CATG	1 cut(s)	375
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	168, 171, 615
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	3 cut(s)	168, 171, 615
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	3 cut(s)	168, 171, 615
GsaI	CCCAGC	1 cut(s)	62
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	3 cut(s)	209, 508, 586
HapII	CCGG	2 cut(s)	194, 509
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	3 cut(s)	5, 258, 318
Hin1II	CATG	1 cut(s)	379
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	4 cut(s)	176, 198, 590, 606
HpaII	CCGG	2 cut(s)	194, 509
Hpy166II	GTNNAC	2 cut(s)	295, 657
Hpy188I	TCNGA	1 cut(s)	611
Hpy188III	TCNNGA	4 cut(s)	251, 494, 517, 603
Hpy8I	GTNNAC	2 cut(s)	295, 657
Hpy99I	CGWCG	5 cut(s)	242, 296, 299, 311, 323
HpyAV	CCTTC	3 cut(s)	54, 117, 548
HpyCH4III	ACNGT	3 cut(s)	102, 229, 472
HpyCH4IV	ACGT	4 cut(s)	237, 258, 291, 297
HpyCH4V	TGCA	1 cut(s)	422
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 158, 167, 220, 360
HpySE526I	ACGT	4 cut(s)	237, 258, 291, 297
Hsp92I	GRCGYC	3 cut(s)	5, 258, 318
Hsp92II	CATG	1 cut(s)	379
HspAI	GCGC	1 cut(s)	165
KroI	GCCGGC	1 cut(s)	508
KroNI	GCCGGC	1 cut(s)	510
Kzo9I	GATC	3 cut(s)	126, 513, 599
LmnI	GCTCC	1 cut(s)	339
Lsp1109I	GCAGC	2 cut(s)	154, 626
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	4 cut(s)	237, 258, 291, 297
MalI	GATC	3 cut(s)	128, 515, 601
MboI	GATC	3 cut(s)	126, 513, 599
MboII	GAAGA	6 cut(s)	171, 174, 177, 180, 323, 464
MflI	RGATCY	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	2 cut(s)	39, 215
MlyI	GAGTC	3 cut(s)	185, 192, 584
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	6 cut(s)	28, 60, 126, 247, 469, 498
MroNI	GCCGGC	1 cut(s)	508
MseI	TTAA	3 cut(s)	110, 402, 621
MslI	CAYNNNNRTG	1 cut(s)	380
MspI	CCGG	2 cut(s)	194, 509
MspR9I	CCNGG	2 cut(s)	22, 195
MvaI	CCWGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	5 cut(s)	149, 158, 167, 220, 360
NaeI	GCCGGC	1 cut(s)	510
NciI	CCSGG	1 cut(s)	195
NdeII	GATC	3 cut(s)	126, 513, 599
NgoMIV	GCCGGC	1 cut(s)	508
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	3 cut(s)	104, 139, 585
NmeAIII	GCCGAG	2 cut(s)	185, 199
PaeR7I	CTCGAG	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	2 cut(s)	303, 315
PdiI	GCCGGC	1 cut(s)	510
PfeI	GAWTC	1 cut(s)	606
PflFI	GACNNNGTC	1 cut(s)	317
PfoI	TCCNGGA	1 cut(s)	193
PkrI	GCNGC	3 cut(s)	169, 172, 616
PleI	GAGTC	3 cut(s)	184, 192, 584
PpsI	GAGTC	3 cut(s)	184, 192, 584
Psp124BI	GAGCTC	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	20
PspFI	CCCAGC	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	3 cut(s)	104, 139, 585
PspPI	GGNCC	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	126
PsyI	GACNNNGTC	1 cut(s)	317
RseI	CAYNNNNRTG	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	225
SalI	GTCGAC	1 cut(s)	293
SaqAI	TTAA	3 cut(s)	110, 402, 621
SatI	GCNGC	3 cut(s)	168, 171, 615
Sau3AI	GATC	3 cut(s)	126, 513, 599
Sau96I	GGNCC	1 cut(s)	584
SchI	GAGTC	3 cut(s)	185, 192, 584
ScrFI	CCNGG	2 cut(s)	22, 195
SduI	GDGCHC	1 cut(s)	225
SfaNI	GCATC	1 cut(s)	409
Sfr274I	CTCGAG	1 cut(s)	251
SgrDI	CGTCGACG	1 cut(s)	293
SlaI	CTCGAG	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	3 cut(s)	251, 329, 425
SmoI	CTYRAG	3 cut(s)	251, 329, 425
Sse9I	AATT	2 cut(s)	39, 215
SsiI	CCGC	3 cut(s)	141, 171, 262
SspMI	CTAG	1 cut(s)	360
SstI	GAGCTC	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	20, 193
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	3 cut(s)	102, 229, 472
TaiI	ACGT	4 cut(s)	240, 261, 294, 300
TaqI	TCGA	6 cut(s)	219, 240, 252, 294, 309, 495
TasI	AATT	2 cut(s)	39, 215
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	606
Tru1I	TTAA	3 cut(s)	110, 402, 621
Tru9I	TTAA	3 cut(s)	110, 402, 621
TscAI	CASTG	1 cut(s)	486
TseI	GCWGC	2 cut(s)	167, 614
TspDTI	ATGAA	2 cut(s)	392, 465
TspGWI	ACGGA	1 cut(s)	295
TspRI	CASTG	1 cut(s)	486
Tth111I	GACNNNGTC	1 cut(s)	317
XcmI	CCANNNNNNNNNTGG	2 cut(s)	241, 344
XhoI	CTCGAG	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	1 cut(s)	360
ZraI	GACGTC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.