MD14G1001600.v1.1
MYB Family

MYB-CC type transfactor, LHEQLE motif

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
299627 .. 302108
2482 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1001600.v1.1.491

Sequence Viewer

Length: 1350 bp
ATGATGTACCATCATCAGCAGCAGCACCAACACCAACACCAACACCAAGGAAAGAAGATCATCCACTCTTCTTCTGCTTCTTCAAGCAGAATATCGATGCCTAACATCTCTTCTGAAAGGCATTTGTTTCTACAGCAAGGTGACCAAAATAGCCCCGCAGGAGATTCAGGCCTTGTCCTCTCAACCGATGCCAAGCCTAGACTCAAATGGACCCCCGATCTACACGAGCGATTTATTGAGGCAGTTAATCAGCTTGGAGGAGCAGATAAGGCCACTCCAAAAACAGTTATGAAACTTATGGGGATTCCAGGCCTTACATTATACCACTTAAAGAGTCATCTTCAGAAGTACAGGCTTAGCAAGAATCTGCATGGAGGGCATGTTACCAGTAGCCTCACCAAAATTGGTCCAGTTCCAGTTTCAGTGGCAGGAGAAAGATTAATATCTGAAGCAAATGGAAGTCAGATGAGCACTATGAGCACTGGCATTGCACCCCAATCAAACAAAGGCTTGCATATAAGTGAAACACTAGAGATGCAAATTGAAGTCCAGAGAAGGCTACACGAGCAACTTGAGGTTCAGCGGCACTTGCAACTTCGTATAGAGTCTCAAGGAAAATACCTGCAGTCTGTGCTGGAGAAAGCCCAGGAGACGCTAGGACGACAAAACTTAGGTTCAGTAGGACTTGAAGCTGCCCAAGTTCAACTCTCTGAGCTGGTGTCCACAGTATCCACCCAATGCTTGAACTCTTCCTTCACAGAGCTCAAAGAATTACAGGGATTGTGCCCTCAGCAAACGCAAATGAACCAGCAGCCCGCCGATTGCTCAATGGACAGCTGCCTAACTTTTTGCGAAGGATCGAAAAAGGACCAAGATCAGATACACAGCAGTGGAGTGCCTCTAAGACCAAATTACAATGGCAGGGTGACAGCAGTCCTGGAACAAAAAGATACAGAACGAGCGCAGCCGCCAATGCTCCAAAACACTAGTCAACTTAATTGGTGTGAAGATATGAAGGAGAATAACATGTTTATTTCCTCCATAAGTAAAGATGCAGAAAAAAGAATGTTCCCTGCTGCAGAAACAAGGTCTAGTGACTTATCCATGAGCATTGGACTACAAGGAGAAAGATGGAATATCGATAGCAAAGGAAGAGACTCAGATGACAGCTTTTTAGAACGTACGAACAGCAGCAGGGCTGATTCAGCTAAAGTCAAGGGTGCGAAAGTTTCTCAAGGATACAGATCAGTGCCTTACTTTGCAGCAAAGCTAGACCTAAATGCTCATGATGATAATGATGCTTCTTCAAGTTGCAGACAGTTTGACTTGAATGGCTTCAGTTGGAGCTAA

Protein Analysis

450

Amino Acids

49.9

Weight (kDa)

7.02

Isoelectric Point (pI)

55.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 67 - 118 1.8e-09 Myb-like DNA-binding domain
Myb_CC_LHEQLE PF14379 172 - 218 3.3e-23 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 630
AciI CCGC 4 cut(s) 156, 583, 816, 968
AclWI GGATC 1 cut(s) 865
AcuI CTGAAG 3 cut(s) 326, 468, 1321
AfaI GTAC 3 cut(s) 8, 350, 1183
AflIII ACRYGT 1 cut(s) 1026
AgsI TTSAA 7 cut(s) 84, 545, 689, 704, 745, 1308, 1330
AhlI ACTAGT 1 cut(s) 986
AjnI CCWGG 3 cut(s) 307, 645, 936
AleI CACNNNNGTG 1 cut(s) 888
AluBI AGCT 9 cut(s) 253, 692, 715, 763, 837, 1170, 1208, 1270, 1347
AluI AGCT 9 cut(s) 253, 692, 715, 763, 837, 1170, 1208, 1270, 1347
Alw21I GWGCWC 3 cut(s) 473, 482, 765
Alw26I GTCTC 3 cut(s) 612, 644, 1149
AlwI GGATC 1 cut(s) 865
AoxI GGCC 3 cut(s) 169, 270, 310
ApeKI GCWGC 9 cut(s) 19, 22, 692, 811, 837, 964, 1076, 1191, 1262
ArsI GACNNNNNNTTYG 2 cut(s) 973, 1005
AseI ATTAAT 1 cut(s) 440
Asp700I GAANNNNTTC 1 cut(s) 1334
AspLEI GCGC 1 cut(s) 964
AspS9I GGNCC 3 cut(s) 210, 407, 868
AsuHPI GGTGA 3 cut(s) 152, 388, 937
AvaII GGWCC 3 cut(s) 210, 407, 868
BaeGI GKGCMC 1 cut(s) 788
BanII GRGCYC 1 cut(s) 765
BauI CACGAG 2 cut(s) 224, 563
Bbv12I GWGCWC 3 cut(s) 473, 482, 765
BbvCI CCTCAGC 1 cut(s) 789
BbvI GCAGC 9 cut(s) 31, 34, 679, 823, 824, 976, 1063, 1203, 1274
BccI CCATC 2 cut(s) 18, 1125
BciT130I CCWGG 3 cut(s) 309, 647, 938
BciVI GTATCC 2 cut(s) 739, 1232
BcoDI GTCTC 3 cut(s) 612, 644, 1149
BcuI ACTAGT 1 cut(s) 986
BfaI CTAG 6 cut(s) 198, 530, 656, 987, 1092, 1271
BfmI CTRYAG 3 cut(s) 131, 623, 1077
BfuAI ACCTGC 1 cut(s) 630
BfuI GTATCC 2 cut(s) 739, 1232
BlpI GCTNAGC 1 cut(s) 356
Bme1390I CCNGG 3 cut(s) 309, 647, 938
Bme18I GGWCC 3 cut(s) 210, 407, 868
BmgT120I GGNCC 3 cut(s) 210, 407, 868
BmiI GGNNCC 1 cut(s) 212
BmrFI CCNGG 3 cut(s) 309, 647, 938
BmsI GCATC 5 cut(s) 87, 178, 525, 1042, 1288
BoxI GACNNNNGTC 1 cut(s) 932
BpmI CTGGAG 1 cut(s) 656
Bpu10I CCTNAGC 1 cut(s) 789
Bpu1102I GCTNAGC 1 cut(s) 356
BpuEI CTTGAG 3 cut(s) 593, 594, 1218
Bsa29I ATCGAT 2 cut(s) 95, 1140
BsaBI GATNNNNATC 2 cut(s) 442, 1243
BsaJI CCNNGG 2 cut(s) 46, 645
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bse1I ACTGG 4 cut(s) 387, 410, 416, 487
Bse3DI GCAATG 1 cut(s) 486
Bse8I GATNNNNATC 2 cut(s) 442, 1243
BseBI CCWGG 3 cut(s) 309, 647, 938
BseCI ATCGAT 2 cut(s) 95, 1140
BseDI CCNNGG 2 cut(s) 46, 645
BseGI GGATG 1 cut(s) 60
BseJI GATNNNNATC 2 cut(s) 442, 1243
BseMI GCAATG 1 cut(s) 486
BseMII CTCAG 3 cut(s) 702, 803, 1173
BseNI ACTGG 4 cut(s) 387, 410, 416, 487
BseRI GAGGAG 1 cut(s) 273
BseSI GKGCMC 1 cut(s) 788
BseXI GCAGC 9 cut(s) 31, 34, 679, 823, 824, 976, 1063, 1203, 1274
BshFI GGCC 3 cut(s) 171, 272, 312
BshVI ATCGAT 2 cut(s) 95, 1140
BsiHKAI GWGCWC 3 cut(s) 473, 482, 765
BsiWI CGTACG 1 cut(s) 1181
BsmAI GTCTC 3 cut(s) 612, 644, 1149
BsmBI CGTCTC 1 cut(s) 644
BsnI GGCC 3 cut(s) 171, 272, 312
Bsp1286I GDGCHC 4 cut(s) 473, 482, 765, 788
Bsp143I GATC 5 cut(s) 57, 217, 857, 874, 1244
Bsp1720I GCTNAGC 1 cut(s) 356
BspACI CCGC 4 cut(s) 156, 583, 816, 968
BspANI GGCC 3 cut(s) 171, 272, 312
BspCNI CTCAG 3 cut(s) 703, 802, 1172
BspDI ATCGAT 2 cut(s) 95, 1140
BspHI TCATGA 1 cut(s) 1285
BspLI GGNNCC 1 cut(s) 212
BspMAI CTGCAG 2 cut(s) 627, 1081
BspMI ACCTGC 1 cut(s) 630
BspPI GGATC 1 cut(s) 865
BsrDI GCAATG 1 cut(s) 486
BsrI ACTGG 4 cut(s) 387, 410, 416, 487
BssECI CCNNGG 2 cut(s) 46, 645
BssMI GATC 5 cut(s) 57, 217, 857, 874, 1244
BssSI CACGAG 2 cut(s) 224, 563
BssT1I CCWWGG 1 cut(s) 46
Bst2BI CACGAG 2 cut(s) 224, 563
Bst2UI CCWGG 3 cut(s) 309, 647, 938
Bst4CI ACNGT 3 cut(s) 286, 727, 1320
Bst6I CTCTTC 4 cut(s) 73, 115, 754, 1147
BstAPI GCANNNNNTGC 1 cut(s) 631
BstC8I GCNNGC 2 cut(s) 512, 816
BstDEI CTNAG 6 cut(s) 356, 670, 711, 789, 902, 1159
BstEII GGTNACC 1 cut(s) 140
BstF5I GGATG 1 cut(s) 60
BstHHI GCGC 1 cut(s) 964
BstKTI GATC 5 cut(s) 60, 220, 860, 877, 1247
BstMAI GTCTC 3 cut(s) 612, 644, 1149
BstMBI GATC 5 cut(s) 57, 217, 857, 874, 1244
BstMWI GCNNNNNNNGC 8 cut(s) 269, 376, 477, 565, 589, 631, 973, 1205
BstNI CCWGG 3 cut(s) 309, 647, 938
BstNSI RCATGY 2 cut(s) 383, 1030
BstPAI GACNNNNGTC 1 cut(s) 932
BstPI GGTNACC 1 cut(s) 140
BstSCI CCNGG 3 cut(s) 307, 645, 936
BstSFI CTRYAG 3 cut(s) 131, 623, 1077
BstSLI GKGCMC 1 cut(s) 788
BstV1I GCAGC 9 cut(s) 31, 34, 679, 823, 824, 976, 1063, 1203, 1274
Bsu15I ATCGAT 2 cut(s) 95, 1140
BsuI GTATCC 2 cut(s) 739, 1232
BsuRI GGCC 3 cut(s) 171, 272, 312
BsuTUI ATCGAT 2 cut(s) 95, 1140
BtsCI GGATG 1 cut(s) 60
BtsI GCAGTG 1 cut(s) 895
BtsIMutI CAGTG 4 cut(s) 429, 480, 895, 1254
BveI ACCTGC 1 cut(s) 630
Cac8I GCNNGC 2 cut(s) 512, 816
CciI TCATGA 1 cut(s) 1285
CfoI GCGC 1 cut(s) 964
Cfr13I GGNCC 3 cut(s) 210, 407, 868
ClaI ATCGAT 2 cut(s) 95, 1140
CseI GACGC 1 cut(s) 661
Csp6I GTAC 3 cut(s) 7, 349, 1182
CviAII CATG 5 cut(s) 371, 380, 1027, 1105, 1286
CviQI GTAC 3 cut(s) 7, 349, 1182
DdeI CTNAG 6 cut(s) 356, 670, 711, 789, 902, 1159
DpnI GATC 5 cut(s) 59, 219, 859, 876, 1246
DpnII GATC 5 cut(s) 57, 217, 857, 874, 1244
Eam1104I CTCTTC 4 cut(s) 73, 115, 754, 1147
EarI CTCTTC 4 cut(s) 73, 115, 754, 1147
Ecl136II GAGCTC 1 cut(s) 763
Eco130I CCWWGG 1 cut(s) 46
Eco147I AGGCCT 2 cut(s) 171, 312
Eco24I GRGCYC 1 cut(s) 765
Eco47I GGWCC 3 cut(s) 210, 407, 868
Eco53kI GAGCTC 1 cut(s) 763
Eco57I CTGAAG 3 cut(s) 326, 468, 1321
Eco91I GGTNACC 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 763
EcoO65I GGTNACC 1 cut(s) 140
EcoRII CCWGG 3 cut(s) 307, 645, 936
EcoT14I CCWWGG 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 765
ErhI CCWWGG 1 cut(s) 46
Esp3I CGTCTC 1 cut(s) 644
FaeI CATG 5 cut(s) 374, 383, 1030, 1108, 1289
FatI CATG 5 cut(s) 370, 379, 1026, 1104, 1285
FauI CCCGC 2 cut(s) 163, 823
FokI GGATG 1 cut(s) 47
FriOI GRGCYC 1 cut(s) 765
FspBI CTAG 6 cut(s) 198, 530, 656, 987, 1092, 1271
GlaI GCGC 1 cut(s) 963
GsuI CTGGAG 1 cut(s) 656
HaeIII GGCC 3 cut(s) 171, 272, 312
HgaI GACGC 1 cut(s) 661
HhaI GCGC 1 cut(s) 964
Hin1II CATG 5 cut(s) 374, 383, 1030, 1108, 1289
Hin6I GCGC 1 cut(s) 962
HinP1I GCGC 1 cut(s) 962
HincII GTYRAC 1 cut(s) 992
HindII GTYRAC 1 cut(s) 992
HinfI GANTC 8 cut(s) 164, 201, 304, 334, 364, 605, 1157, 1202
HphI GGTGA 3 cut(s) 152, 388, 937
Hpy166II GTNNAC 2 cut(s) 723, 992
Hpy188I TCNGA 7 cut(s) 115, 345, 448, 465, 712, 879, 1162
Hpy188III TCNNGA 2 cut(s) 550, 1286
Hpy8I GTNNAC 2 cut(s) 723, 992
HpyAV CCTTC 4 cut(s) 549, 763, 848, 1009
HpyCH4III ACNGT 3 cut(s) 286, 727, 1320
HpyCH4IV ACGT 1 cut(s) 1180
HpyF10VI GCNNNNNNNGC 8 cut(s) 269, 376, 477, 565, 589, 631, 973, 1205
HpyF3I CTNAG 6 cut(s) 356, 670, 711, 789, 902, 1159
HpySE526I ACGT 1 cut(s) 1180
Hsp92II CATG 5 cut(s) 374, 383, 1030, 1108, 1289
HspAI GCGC 1 cut(s) 962
Kzo9I GATC 5 cut(s) 57, 217, 857, 874, 1244
LmnI GCTCC 3 cut(s) 260, 981, 1344
Lsp1109I GCAGC 9 cut(s) 31, 34, 679, 823, 824, 976, 1063, 1203, 1274
LweI GCATC 5 cut(s) 87, 178, 525, 1042, 1288
MaeI CTAG 6 cut(s) 198, 530, 656, 987, 1092, 1271
MaeII ACGT 1 cut(s) 1180
MaeIII GTNAC 4 cut(s) 140, 382, 925, 1094
MalI GATC 5 cut(s) 59, 219, 859, 876, 1246
MboI GATC 5 cut(s) 57, 217, 857, 874, 1244
MhlI GDGCHC 4 cut(s) 473, 482, 765, 788
MluCI AATT 5 cut(s) 402, 540, 770, 910, 997
MlyI GAGTC 4 cut(s) 195, 343, 614, 1151
MmeI TCCRAC 1 cut(s) 1322
MnlI CCTC 9 cut(s) 188, 232, 251, 368, 404, 568, 798, 909, 1048
MroXI GAANNNNTTC 1 cut(s) 1334
MseI TTAA 4 cut(s) 246, 329, 440, 996
MslI CAYNNNNRTG 2 cut(s) 519, 888
MspA1I CMGCKG 2 cut(s) 583, 837
MspR9I CCNGG 3 cut(s) 309, 647, 938
MvaI CCWGG 3 cut(s) 309, 647, 938
MwoI GCNNNNNNNGC 8 cut(s) 269, 376, 477, 565, 589, 631, 973, 1205
NdeII GATC 5 cut(s) 57, 217, 857, 874, 1244
NlaIII CATG 5 cut(s) 374, 383, 1030, 1108, 1289
NlaIV GGNNCC 1 cut(s) 212
NmuCI GTSAC 3 cut(s) 140, 925, 1094
NspI RCATGY 2 cut(s) 383, 1030
OliI CACNNNNGTG 1 cut(s) 888
PagI TCATGA 1 cut(s) 1285
PceI AGGCCT 2 cut(s) 171, 312
PciI ACATGT 1 cut(s) 1026
PdmI GAANNNNTTC 1 cut(s) 1334
PfeI GAWTC 4 cut(s) 164, 304, 364, 1202
Pfl23II CGTACG 1 cut(s) 1181
PfoI TCCNGGA 1 cut(s) 936
PleI GAGTC 4 cut(s) 195, 342, 613, 1151
PpsI GAGTC 4 cut(s) 195, 342, 613, 1151
PscI ACATGT 1 cut(s) 1026
PshAI GACNNNNGTC 1 cut(s) 932
PshBI ATTAAT 1 cut(s) 440
Psp124BI GAGCTC 1 cut(s) 765
Psp6I CCWGG 3 cut(s) 307, 645, 936
PspEI GGTNACC 1 cut(s) 140
PspGI CCWGG 3 cut(s) 307, 645, 936
PspLI CGTACG 1 cut(s) 1181
PspN4I GGNNCC 1 cut(s) 212
PspPI GGNCC 3 cut(s) 210, 407, 868
PstI CTGCAG 2 cut(s) 627, 1081
PvuII CAGCTG 1 cut(s) 837
RsaI GTAC 3 cut(s) 8, 350, 1183
RsaNI GTAC 3 cut(s) 7, 349, 1182
RseI CAYNNNNRTG 2 cut(s) 519, 888
SacI GAGCTC 1 cut(s) 765
SaqAI TTAA 4 cut(s) 246, 329, 440, 996
Sau3AI GATC 5 cut(s) 57, 217, 857, 874, 1244
Sau96I GGNCC 3 cut(s) 210, 407, 868
SchI GAGTC 4 cut(s) 195, 343, 614, 1151
ScrFI CCNGG 3 cut(s) 309, 647, 938
SduI GDGCHC 4 cut(s) 473, 482, 765, 788
SfaNI GCATC 5 cut(s) 87, 178, 525, 1042, 1288
SfcI CTRYAG 3 cut(s) 131, 623, 1077
SinI GGWCC 3 cut(s) 210, 407, 868
SmiMI CAYNNNNRTG 2 cut(s) 519, 888
SmlI CTYRAG 3 cut(s) 572, 609, 1233
SmoI CTYRAG 3 cut(s) 572, 609, 1233
SpeI ACTAGT 1 cut(s) 986
Sse9I AATT 5 cut(s) 402, 540, 770, 910, 997
SseBI AGGCCT 2 cut(s) 171, 312
SsiI CCGC 4 cut(s) 156, 583, 816, 968
SspMI CTAG 6 cut(s) 198, 530, 656, 987, 1092, 1271
SstI GAGCTC 1 cut(s) 765
StuI AGGCCT 2 cut(s) 171, 312
StyD4I CCNGG 3 cut(s) 307, 645, 936
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 3 cut(s) 286, 727, 1320
TaiI ACGT 1 cut(s) 1183
TaqI TCGA 3 cut(s) 95, 860, 1140
TasI AATT 5 cut(s) 402, 540, 770, 910, 997
TatI WGTACW 1 cut(s) 348
TauI GCSGC 2 cut(s) 586, 970
TfiI GAWTC 4 cut(s) 164, 304, 364, 1202
Tru1I TTAA 4 cut(s) 246, 329, 440, 996
Tru9I TTAA 4 cut(s) 246, 329, 440, 996
TscAI CASTG 4 cut(s) 429, 487, 895, 1254
TseFI GTSAC 3 cut(s) 140, 925, 1094
TseI GCWGC 9 cut(s) 19, 22, 692, 811, 837, 964, 1076, 1191, 1262
Tsp45I GTSAC 3 cut(s) 140, 925, 1094
TspDTI ATGAA 3 cut(s) 305, 818, 1028
TspRI CASTG 4 cut(s) 429, 487, 895, 1254
VpaK11BI GGWCC 3 cut(s) 210, 407, 868
VspI ATTAAT 1 cut(s) 440
XceI RCATGY 2 cut(s) 383, 1030
XmnI GAANNNNTTC 1 cut(s) 1334
XspI CTAG 6 cut(s) 198, 530, 656, 987, 1092, 1271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.