Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002648

Physical Location & Seq

Genomic Coordinates Forward (+)

1614178 .. 1615563

Gene Structure 1386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G05560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAGTCGTGGAGGTGCAGCTGTTGCCAAGGGAAAGAAGAAGGGAGTTTCCTTCACCATTGATTGTTCAAAGCCTGTCGATGACAAGATCATGGAGATTGCTTCCCTTGAGAAGTTTCTTCAGGAGAGGATCAAGGTCGGTGGCAAAGCTGGTGCACTTGGTGATTCTGTCACAATCACACGTGAGAAGAGCAAGATCACTGTCACTGCAGATGGCCAATTCTCCAAGAGGTATTTGAAGTACTTGACAAAGAAGTACCTGAAGAAGCACAATGTAAGGGATTGGCTCAGAGTGATTGCAGCAAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACATTGCTGAGAACGAAGGAGAGGAGGAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22e

Protein Analysis

124

Amino Acids

14.02

Weight (kDa)

9.57

Isoelectric Point (pI)

29.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22e	PF01776	14 - 123	1.9e-46	Ribosomal L22e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05560 AT3G05560 AT3G05560 AT5G27770
fragaria_vesca	FvH4_2g25750 FvH4_7g11630
malus_domestica	MD02G1205500.v1.1 MD03G1288500.v1.1 MD07G1121900.v1.1 MD11G1309600.v1.1
prunus_persica	Prupe.2G144300_v2.0.a1 Prupe.8G261700_v2.0.a1
pyrus_communis	pycom02g16730 pycom07g10430
rosa_chinensis	RchiOBHm_Chr1g0350181 RchiOBHm_Chr6g0294041
rosa_laevigata	RLG00000011904 RLG00000028500
rosa_multiflora	Rmu_co8031908.1_g000001 Rmu_sc0010426.1_g000003 Rmu_sc0030988.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305030 Rroxscaffold_7G00173700
rosa_rugosa	Rorug01G0209000 Rorug01G0209100 Rorug01G0209200 Rorug06G0240500 Rorug06G0240500
rosa_samantha	Rh1AG224900 Rh1BG192800 Rh1CG209700 Rh1DG221200 Rh6AG353400 Rh6BG360300 Rh6CG367500 Rh6DG354200
rosa_wichuraiana	Rw1G013180 Rw1G019230 Rw1G019330 Rw6G030790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	214
AcuI	CTGAAG	2 cut(s)	104, 281
AcvI	CACGTG	1 cut(s)	182
AdeI	CACNNNGTG	1 cut(s)	161
AfaI	GTAC	3 cut(s)	242, 257, 335
AflIII	ACRYGT	1 cut(s)	179
AgsI	TTSAA	3 cut(s)	69, 238, 340
AluBI	AGCT	2 cut(s)	20, 149
AluI	AGCT	2 cut(s)	20, 149
Alw21I	GWGCWC	1 cut(s)	157
Alw44I	GTGCAC	1 cut(s)	153
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	1 cut(s)	214
ApaLI	GTGCAC	1 cut(s)	153
ApeKI	GCWGC	2 cut(s)	17, 299
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	2 cut(s)	46, 173
AvaII	GGWCC	1 cut(s)	310
BaeGI	GKGCMC	1 cut(s)	157
BalI	TGGCCA	1 cut(s)	216
BbrPI	CACGTG	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	2 cut(s)	29, 311
BccI	CCATC	1 cut(s)	206
BfmI	CTRYAG	1 cut(s)	207
BisI	GCNGC	2 cut(s)	18, 300
BlsI	GCNGC	2 cut(s)	19, 301
BmcAI	AGTACT	1 cut(s)	242
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	310
BpuEI	CTTGAG	1 cut(s)	128
BsaAI	YACGTR	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	27
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	301, 339
BseSI	GKGCMC	1 cut(s)	157
BseXI	GCAGC	2 cut(s)	29, 311
BsgI	GTGCAG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	3 cut(s)	87, 129, 195
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	2 cut(s)	300, 340
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	1 cut(s)	137
BspQI	GCTCTTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	342
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	3 cut(s)	87, 129, 195
BssT1I	CCWWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	202, 314
Bst6I	CTCTTC	1 cut(s)	182
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstBAI	YACGTR	1 cut(s)	182
BstDEI	CTNAG	2 cut(s)	287, 348
BstKTI	GATC	3 cut(s)	90, 132, 198
BstMBI	GATC	3 cut(s)	87, 129, 195
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	29, 311
BsuRI	GGCC	1 cut(s)	216
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	198, 204
Cfr13I	GGNCC	1 cut(s)	310
Csp6I	GTAC	3 cut(s)	241, 256, 334
CspCI	CAANNNNNGTGG	2 cut(s)	121, 156
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	5 cut(s)	20, 73, 149, 216, 286
CviKI_1	RGCY	5 cut(s)	20, 73, 149, 216, 286
CviQI	GTAC	3 cut(s)	241, 256, 334
DdeI	CTNAG	2 cut(s)	287, 348
DpnI	GATC	3 cut(s)	89, 131, 197
DpnII	GATC	3 cut(s)	87, 129, 195
DraIII	CACNNNGTG	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	310
Eco57I	CTGAAG	2 cut(s)	104, 281
Eco72I	CACGTG	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	1 cut(s)	94
FaiI	YATR	2 cut(s)	92, 324
FatI	CATG	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	18, 300
Fsp4HI	GCNGC	2 cut(s)	18, 300
GluI	GCNGC	2 cut(s)	18, 300
HaeIII	GGCC	1 cut(s)	216
Hin1II	CATG	1 cut(s)	94
HinfI	GANTC	2 cut(s)	4, 164
HphI	GGTGA	2 cut(s)	46, 173
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	290
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	155
HpyAV	CCTTC	3 cut(s)	34, 61, 350
HpyCH4III	ACNGT	2 cut(s)	202, 314
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	4 cut(s)	17, 155, 209, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	2 cut(s)	287, 348
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	87, 129, 195
LguI	GCTCTTC	1 cut(s)	182
LpnPI	CCDG	4 cut(s)	87, 107, 135, 272
Lsp1109I	GCAGC	2 cut(s)	29, 311
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	3 cut(s)	169, 202, 314
MalI	GATC	3 cut(s)	89, 131, 197
MboI	GATC	3 cut(s)	87, 129, 195
MboII	GAAGA	4 cut(s)	49, 110, 199, 274
MhlI	GDGCHC	1 cut(s)	157
MlsI	TGGCCA	1 cut(s)	216
MluCI	AATT	1 cut(s)	218
MluNI	TGGCCA	1 cut(s)	216
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	7 cut(s)	5, 120, 222, 324, 329, 355, 358
Mox20I	TGGCCA	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	216
Msp20I	TGGCCA	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	3 cut(s)	87, 129, 195
NlaIII	CATG	1 cut(s)	94
NmuCI	GTSAC	2 cut(s)	169, 202
PciSI	GCTCTTC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	19, 301
PleI	GAGTC	1 cut(s)	12
PmaCI	CACGTG	1 cut(s)	182
PmlI	CACGTG	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	182
PspCI	CACGTG	1 cut(s)	182
PspPI	GGNCC	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	211
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	3 cut(s)	242, 257, 335
RsaNI	GTAC	3 cut(s)	241, 256, 334
SapI	GCTCTTC	1 cut(s)	182
SatI	GCNGC	2 cut(s)	18, 300
Sau3AI	GATC	3 cut(s)	87, 129, 195
Sau96I	GGNCC	1 cut(s)	310
ScaI	AGTACT	1 cut(s)	242
SchI	GAGTC	1 cut(s)	13
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	9 cut(s)	16, 22, 138, 151, 184, 233, 261, 321, 335
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	1 cut(s)	310
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	1 cut(s)	218
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	202, 314
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	1 cut(s)	78
TasI	AATT	1 cut(s)	218
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	164
TscAI	CASTG	2 cut(s)	205, 211
TseFI	GTSAC	2 cut(s)	169, 202
TseI	GCWGC	2 cut(s)	17, 299
Tsp45I	GTSAC	2 cut(s)	169, 202
TspRI	CASTG	2 cut(s)	205, 211
VneI	GTGCAC	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	310
ZrmI	AGTACT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.