Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002648

Physical Location & Seq

Genomic Coordinates Forward (+)

20141119 .. 20143258

Gene Structure 2140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G144300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAGTCGAGGAGCTGCAGCAGGTCCCAAGGGGAAAAAGAAGGGAGTGACTTTCACCATTGATTGTGGAAAGCCAGTGGAGGACAAGATCATGGACATTGCATCCCTGGAGAAGTTTCTTCAGGAGAGGATCAAGGTTGGAGGCAAGGCCGGTGCACTTGGTGACGCGGTCAGTGTGACCCGGGAGAAGAGCAAGATCACTGTCACTTCTGACAGTAACTTCTCTAAGAGGTATCTGAAGTACTTGACAAAGAAGTATCTTAAGAAGCACAATGTGCGAGATTGGCTTAGAGTGATTGCTTCCAACAAGGATCGGAATGTTTATGAACTAAGGTACTTCAACATTGCCGAGAATGAAGGGGAGGAGGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22e

Protein Analysis

125

Amino Acids

13.99

Weight (kDa)

9.57

Isoelectric Point (pI)

29.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05560 AT3G05560 AT3G05560 AT5G27770
fragaria_vesca	FvH4_2g25750 FvH4_7g11630
malus_domestica	MD02G1205500.v1.1 MD03G1288500.v1.1 MD07G1121900.v1.1 MD11G1309600.v1.1
prunus_persica	Prupe.2G144300_v2.0.a1 Prupe.8G261700_v2.0.a1
pyrus_communis	pycom02g16730 pycom07g10430
rosa_chinensis	RchiOBHm_Chr1g0350181 RchiOBHm_Chr6g0294041
rosa_laevigata	RLG00000011904 RLG00000028500
rosa_multiflora	Rmu_co8031908.1_g000001 Rmu_sc0010426.1_g000003 Rmu_sc0030988.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305030 Rroxscaffold_7G00173700
rosa_rugosa	Rorug01G0209000 Rorug01G0209100 Rorug01G0209200 Rorug06G0240500 Rorug06G0240500
rosa_samantha	Rh1AG224900 Rh1BG192800 Rh1CG209700 Rh1DG221200 Rh6AG353400 Rh6BG360300 Rh6CG367500 Rh6DG354200
rosa_wichuraiana	Rw1G013180 Rw1G019230 Rw1G019330 Rw6G030790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	11
AccII	CGCG	1 cut(s)	167
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	2 cut(s)	137, 318
AcuI	CTGAAG	2 cut(s)	104, 257
AdeI	CACNNNGTG	2 cut(s)	161, 274
AfaI	GTAC	2 cut(s)	242, 335
AflII	CTTAAG	1 cut(s)	260
AgsI	TTSAA	1 cut(s)	340
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw21I	GWGCWC	1 cut(s)	157
Alw44I	GTGCAC	1 cut(s)	153
AlwI	GGATC	2 cut(s)	137, 318
Ama87I	CYCGRG	1 cut(s)	180
AoxI	GGCC	1 cut(s)	147
ApaLI	GTGCAC	1 cut(s)	153
ApeKI	GCWGC	2 cut(s)	14, 17
AspS9I	GGNCC	1 cut(s)	23
AsuC2I	CCSGG	2 cut(s)	181, 182
AsuHPI	GGTGA	2 cut(s)	46, 173
AvaI	CYCGRG	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	23
BaeGI	GKGCMC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	107
BcnI	CCSGG	2 cut(s)	181, 182
BfmI	CTRYAG	1 cut(s)	15
BfrI	CTTAAG	1 cut(s)	260
BfuAI	ACCTGC	1 cut(s)	11
BisI	GCNGC	2 cut(s)	15, 18
BlsI	GCNGC	2 cut(s)	16, 19
BmcAI	AGTACT	1 cut(s)	242
Bme1390I	CCNGG	3 cut(s)	107, 181, 182
Bme18I	GGWCC	1 cut(s)	23
BmeT110I	CYCGRG	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	3 cut(s)	107, 181, 182
BmsI	GCATC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	128
BpuMI	CCSGG	2 cut(s)	181, 182
BsaJI	CCNNGG	3 cut(s)	27, 105, 180
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	74
Bse3DI	GCAATG	2 cut(s)	96, 342
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	3 cut(s)	27, 105, 180
BseGI	GGATG	1 cut(s)	101
BseMI	GCAATG	2 cut(s)	96, 342
BseNI	ACTGG	1 cut(s)	74
BseRI	GAGGAG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	29
Bsh1236I	CGCG	1 cut(s)	167
BshFI	GGCC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	157
BsiHKCI	CYCGRG	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	150, 181
BslFI	GGGAC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	149
BsoBI	CYCGRG	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	4 cut(s)	87, 129, 195, 310
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	1 cut(s)	149
BspFNI	CGCG	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	25
BspMAI	CTGCAG	1 cut(s)	19
BspMI	ACCTGC	1 cut(s)	11
BspPI	GGATC	2 cut(s)	137, 318
BspQI	GCTCTTC	1 cut(s)	182
BspTI	CTTAAG	1 cut(s)	260
BsrDI	GCAATG	2 cut(s)	96, 342
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	3 cut(s)	27, 105, 180
BssMI	GATC	4 cut(s)	87, 129, 195, 310
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	2 cut(s)	202, 215
Bst6I	CTCTTC	1 cut(s)	182
BstAFI	CTTAAG	1 cut(s)	260
BstAPI	GCANNNNNTGC	1 cut(s)	274
BstDEI	CTNAG	3 cut(s)	225, 287, 329
BstF5I	GGATG	1 cut(s)	101
BstFNI	CGCG	1 cut(s)	167
BstKTI	GATC	4 cut(s)	90, 132, 198, 313
BstMBI	GATC	4 cut(s)	87, 129, 195, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	274, 283
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	3 cut(s)	105, 179, 180
BstSFI	CTRYAG	1 cut(s)	15
BstSLI	GKGCMC	1 cut(s)	157
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	101
BtsIMutI	CAGTG	3 cut(s)	81, 178, 198
BveI	ACCTGC	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	23
Cfr9I	CCCGGG	1 cut(s)	180
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	2 cut(s)	241, 334
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	4 cut(s)	14, 73, 149, 286
CviKI_1	RGCY	4 cut(s)	14, 73, 149, 286
CviQI	GTAC	2 cut(s)	241, 334
DdeI	CTNAG	3 cut(s)	225, 287, 329
DpnI	GATC	4 cut(s)	89, 131, 197, 312
DpnII	GATC	4 cut(s)	87, 129, 195, 310
DraIII	CACNNNGTG	2 cut(s)	161, 274
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	23
Eco57I	CTGAAG	2 cut(s)	104, 257
Eco88I	CYCGRG	1 cut(s)	180
EcoO109I	RGGNCCY	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	1 cut(s)	94
FaiI	YATR	2 cut(s)	92, 324
FaqI	GGGAC	1 cut(s)	9
FatI	CATG	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	15, 18
FokI	GGATG	1 cut(s)	88
Fsp4HI	GCNGC	2 cut(s)	15, 18
GluI	GCNGC	2 cut(s)	15, 18
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	2 cut(s)	150, 181
HgaI	GACGC	1 cut(s)	173
Hin1II	CATG	1 cut(s)	94
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	2 cut(s)	150, 181
HphI	GGTGA	2 cut(s)	46, 173
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188I	TCNGA	3 cut(s)	211, 237, 315
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	155
HpyAV	CCTTC	2 cut(s)	34, 350
HpyCH4III	ACNGT	2 cut(s)	202, 215
HpyCH4V	TGCA	3 cut(s)	17, 101, 155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	274, 283
HpyF3I	CTNAG	3 cut(s)	225, 287, 329
Hsp92II	CATG	1 cut(s)	94
Kzo9I	GATC	4 cut(s)	87, 129, 195, 310
LguI	GCTCTTC	1 cut(s)	182
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	7 cut(s)	6, 87, 92, 107, 119, 163, 194
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	1 cut(s)	110
MaeIII	GTNAC	5 cut(s)	46, 161, 175, 202, 215
MalI	GATC	4 cut(s)	89, 131, 197, 312
MboI	GATC	4 cut(s)	87, 129, 195, 310
MboII	GAAGA	2 cut(s)	110, 199
MhlI	GDGCHC	1 cut(s)	157
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	2 cut(s)	118, 327
MnlI	CCTC	6 cut(s)	73, 120, 134, 222, 355, 358
MseI	TTAA	1 cut(s)	261
MspCI	CTTAAG	1 cut(s)	260
MspI	CCGG	2 cut(s)	150, 181
MspR9I	CCNGG	3 cut(s)	107, 181, 182
MvaI	CCWGG	1 cut(s)	107
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	2 cut(s)	274, 283
NciI	CCSGG	2 cut(s)	181, 182
NdeII	GATC	4 cut(s)	87, 129, 195, 310
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	25
NmeAIII	GCCGAG	1 cut(s)	373
NmuCI	GTSAC	4 cut(s)	46, 161, 175, 202
PciSI	GCTCTTC	1 cut(s)	182
PflFI	GACNNNGTC	1 cut(s)	167
PkrI	GCNGC	2 cut(s)	16, 19
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PpuMI	RGGWCCY	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	1 cut(s)	23
PspPPI	RGGWCCY	1 cut(s)	23
PstI	CTGCAG	1 cut(s)	19
PsyI	GACNNNGTC	1 cut(s)	167
RsaI	GTAC	2 cut(s)	242, 335
RsaNI	GTAC	2 cut(s)	241, 334
SapI	GCTCTTC	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	2 cut(s)	15, 18
Sau3AI	GATC	4 cut(s)	87, 129, 195, 310
Sau96I	GGNCC	1 cut(s)	23
ScaI	AGTACT	1 cut(s)	242
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	3 cut(s)	107, 181, 182
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	5 cut(s)	16, 25, 138, 233, 335
SfaNI	GCATC	1 cut(s)	110
SfcI	CTRYAG	1 cut(s)	15
SinI	GGWCC	1 cut(s)	23
SmaI	CCCGGG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SsiI	CCGC	1 cut(s)	167
StyD4I	CCNGG	3 cut(s)	105, 179, 180
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	202, 215
TaqI	TCGA	1 cut(s)	7
TatI	WGTACW	1 cut(s)	240
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	3 cut(s)	81, 178, 205
TseFI	GTSAC	4 cut(s)	46, 161, 175, 202
TseI	GCWGC	2 cut(s)	14, 17
Tsp45I	GTSAC	4 cut(s)	46, 161, 175, 202
TspDTI	ATGAA	2 cut(s)	339, 369
TspMI	CCCGGG	1 cut(s)	180
TspRI	CASTG	3 cut(s)	81, 178, 205
Tth111I	GACNNNGTC	1 cut(s)	167
Vha464I	CTTAAG	1 cut(s)	260
VneI	GTGCAC	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	23
XmaI	CCCGGG	1 cut(s)	180
ZrmI	AGTACT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.