Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002648

Physical Location & Seq

Genomic Coordinates Forward (+)

38343598 .. 38345516

Gene Structure 1919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0240500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAGTCACTTTTGCCCGAAGTCTAAACCAACAACAACAAACCCAAGAGAGTTGGAAAAGGCTCAAGTGGTTGACATGGAAGAGGAGGAGGCTGTGAGGTCAAGATTCAAGAGGGTTTGTGTGTTTTGTGGAAGCAGTACTGGGAAGAGGGAATGTTACAAAGATGCTGCCATAGAATTAGGCCAAGAGCTGGCTGTGCATGATGGTGGAGGCAAAGTTCTTGGGATCATCCCCAGGCCTCTAATGGGTGCAGAGATAACAGGTGAAACAGTTGGGGAGGAAAGGTCTGTAACCGACATGCACCAAAGGAAGGCTGAAATGGCCCGCCATTCTGATTGTTTTATAGCATTACCAGGTGGGTATGGAACTTTGGAAGAGTTGCTGGAAGTGATAGCTTGGTCCCAGCTTGGTATCCATGACAAACCTGTGGGTTTGCTCAATGTTGATGGCTACTACAACTACCTCCTCACTTTTATTGACAAAGCCGTGGATGATGGCTTTATTGAGCCTTCCCAGCGCCACATCATAGTCTCTGCCACCAATGCCAAGGAGCTTGTTGAAAAACTTGAGGAGTATGTGCCAGTGCATGATGGAGCCATAGCCAAAGCAAGTTGGGAGGTTCAGCAACAAGCGGAACAGCAGGAGAAACAACAGGTGGGGTTCAATGTTGCTTCTGCAGCTGCTGCATCTGCTACTACTTTGCAGACTGAGATAGCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22e

Protein Analysis

240

Amino Acids

26.35

Weight (kDa)

5.01

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lysine_decarbox	PF03641	65 - 189	1.2e-44	Possible lysine decarboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05560 AT3G05560 AT3G05560 AT5G27770
fragaria_vesca	FvH4_2g25750 FvH4_7g11630
malus_domestica	MD02G1205500.v1.1 MD03G1288500.v1.1 MD07G1121900.v1.1 MD11G1309600.v1.1
prunus_persica	Prupe.2G144300_v2.0.a1 Prupe.8G261700_v2.0.a1
pyrus_communis	pycom02g16730 pycom07g10430
rosa_chinensis	RchiOBHm_Chr1g0350181 RchiOBHm_Chr6g0294041
rosa_laevigata	RLG00000011904 RLG00000028500
rosa_multiflora	Rmu_co8031908.1_g000001 Rmu_sc0010426.1_g000003 Rmu_sc0030988.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305030 Rroxscaffold_7G00173700
rosa_rugosa	Rorug01G0209000 Rorug01G0209100 Rorug01G0209200 Rorug06G0240500 Rorug06G0240500
rosa_samantha	Rh1AG224900 Rh1BG192800 Rh1CG209700 Rh1DG221200 Rh6AG353400 Rh6BG360300 Rh6CG367500 Rh6DG354200
rosa_wichuraiana	Rw1G013180 Rw1G019230 Rw1G019330 Rw6G030790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	190
AciI	CCGC	2 cut(s)	325, 632
AclWI	GGATC	1 cut(s)	233
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	3 cut(s)	190, 245, 310
AgsI	TTSAA	3 cut(s)	109, 560, 664
AjnI	CCWGG	2 cut(s)	233, 352
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
AluBI	AGCT	6 cut(s)	190, 395, 406, 553, 680, 716
AluI	AGCT	6 cut(s)	190, 395, 406, 553, 680, 716
Alw26I	GTCTC	1 cut(s)	535
AlwI	GGATC	1 cut(s)	233
AlwNI	CAGNNNCTG	1 cut(s)	683
AoxI	GGCC	3 cut(s)	181, 236, 321
ApeKI	GCWGC	4 cut(s)	167, 677, 680, 683
AspLEI	GCGC	1 cut(s)	519
AspS9I	GGNCC	2 cut(s)	322, 399
AsuHPI	GGTGA	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	399
BbvI	GCAGC	4 cut(s)	154, 667, 670, 689
BccI	CCATC	4 cut(s)	197, 440, 488, 584
BceAI	ACGGC	1 cut(s)	470
BciT130I	CCWGG	2 cut(s)	235, 354
BciVI	GTATCC	1 cut(s)	422
BcoDI	GTCTC	1 cut(s)	535
BfmI	CTRYAG	1 cut(s)	675
BfoI	RGCGCY	1 cut(s)	520
BfuI	GTATCC	1 cut(s)	422
BisI	GCNGC	4 cut(s)	168, 678, 681, 684
BlsI	GCNGC	4 cut(s)	169, 679, 682, 685
BmcAI	AGTACT	1 cut(s)	139
Bme1390I	CCNGG	2 cut(s)	235, 354
Bme18I	GGWCC	1 cut(s)	399
BmgT120I	GGNCC	2 cut(s)	322, 399
BmiI	GGNNCC	2 cut(s)	401, 595
BmrFI	CCNGG	2 cut(s)	235, 354
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	2 cut(s)	154, 695
BmuI	ACTGGG	1 cut(s)	150
BpuEI	CTTGAG	2 cut(s)	48, 587
BsaJI	CCNNGG	3 cut(s)	233, 486, 546
BsaXI	ACNNNNNCTCC	4 cut(s)	201, 231, 269, 299
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 245, 310
Bse1I	ACTGG	2 cut(s)	145, 581
BseBI	CCWGG	2 cut(s)	235, 354
BseDI	CCNNGG	3 cut(s)	233, 486, 546
BseGI	GGATG	2 cut(s)	228, 496
BseLI	CCNNNNNNNGG	3 cut(s)	190, 245, 310
BseMII	CTCAG	1 cut(s)	699
BseNI	ACTGG	2 cut(s)	145, 581
BseRI	GAGGAG	4 cut(s)	98, 101, 455, 584
BseXI	GCAGC	4 cut(s)	154, 667, 670, 689
BseYI	CCCAGC	2 cut(s)	402, 513
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	3 cut(s)	183, 238, 323
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	3 cut(s)	190, 245, 310
BsmAI	GTCTC	1 cut(s)	535
BsmFI	GGGAC	1 cut(s)	385
BsnI	GGCC	3 cut(s)	183, 238, 323
Bsp143I	GATC	1 cut(s)	225
BspACI	CCGC	2 cut(s)	325, 632
BspANI	GGCC	3 cut(s)	183, 238, 323
BspCNI	CTCAG	1 cut(s)	700
BspLI	GGNNCC	2 cut(s)	401, 595
BspMAI	CTGCAG	1 cut(s)	679
BspPI	GGATC	1 cut(s)	233
BsrI	ACTGG	2 cut(s)	145, 581
BssECI	CCNNGG	3 cut(s)	233, 486, 546
BssMI	GATC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	546
Bst2UI	CCWGG	2 cut(s)	235, 354
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	3 cut(s)	75, 140, 369
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstC8I	GCNNGC	2 cut(s)	192, 325
BstDEI	CTNAG	1 cut(s)	708
BstDSI	CCRYGG	1 cut(s)	486
BstF5I	GGATG	2 cut(s)	228, 496
BstH2I	RGCGCY	1 cut(s)	520
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	1 cut(s)	228
BstMAI	GTCTC	1 cut(s)	535
BstMBI	GATC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	7 cut(s)	196, 320, 514, 542, 677, 683, 689
BstNI	CCWGG	2 cut(s)	235, 354
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	2 cut(s)	233, 352
BstSFI	CTRYAG	1 cut(s)	675
BstV1I	GCAGC	4 cut(s)	154, 667, 670, 689
BsuI	GTATCC	1 cut(s)	422
BsuRI	GGCC	3 cut(s)	183, 238, 323
BtgI	CCRYGG	1 cut(s)	486
BtsCI	GGATG	2 cut(s)	228, 496
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	2 cut(s)	192, 325
CaiI	CAGNNNCTG	1 cut(s)	683
CfoI	GCGC	1 cut(s)	519
Cfr13I	GGNCC	2 cut(s)	322, 399
CsiI	ACCWGGT	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	5 cut(s)	76, 200, 298, 416, 587
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	1 cut(s)	708
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
Eam1104I	CTCTTC	3 cut(s)	75, 140, 369
EarI	CTCTTC	3 cut(s)	75, 140, 369
Eco130I	CCWWGG	1 cut(s)	546
Eco147I	AGGCCT	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	399
EcoRII	CCWGG	2 cut(s)	233, 352
EcoT14I	CCWWGG	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	5 cut(s)	79, 203, 301, 419, 590
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	5 cut(s)	75, 199, 297, 415, 586
FauI	CCCGC	1 cut(s)	332
Fnu4HI	GCNGC	4 cut(s)	168, 678, 681, 684
FokI	GGATG	2 cut(s)	215, 503
Fsp4HI	GCNGC	4 cut(s)	168, 678, 681, 684
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	4 cut(s)	168, 678, 681, 684
GsaI	CCCAGC	2 cut(s)	406, 517
HaeII	RGCGCY	1 cut(s)	520
HaeIII	GGCC	3 cut(s)	183, 238, 323
HhaI	GCGC	1 cut(s)	519
Hin1II	CATG	5 cut(s)	79, 203, 301, 419, 590
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	2 cut(s)	4, 105
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	2 cut(s)	102, 109
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	304, 519
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	7 cut(s)	199, 251, 301, 586, 677, 686, 703
HpyF10VI	GCNNNNNNNGC	7 cut(s)	196, 320, 514, 542, 677, 683, 689
HpyF3I	CTNAG	1 cut(s)	708
Hsp92II	CATG	5 cut(s)	79, 203, 301, 419, 590
HspAI	GCGC	1 cut(s)	517
Kzo9I	GATC	1 cut(s)	225
LmnI	GCTCC	2 cut(s)	550, 593
Lsp1109I	GCAGC	4 cut(s)	154, 667, 670, 689
LweI	GCATC	2 cut(s)	154, 695
MabI	ACCWGGT	1 cut(s)	352
MaeIII	GTNAC	3 cut(s)	5, 155, 289
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MboII	GAAGA	3 cut(s)	92, 157, 386
MluCI	AATT	1 cut(s)	176
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	680
MspR9I	CCNGG	2 cut(s)	235, 354
MvaI	CCWGG	2 cut(s)	235, 354
MwoI	GCNNNNNNNGC	7 cut(s)	196, 320, 514, 542, 677, 683, 689
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	5 cut(s)	79, 203, 301, 419, 590
NlaIV	GGNNCC	2 cut(s)	401, 595
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	1 cut(s)	301
PceI	AGGCCT	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	105
PflMI	CCANNNNNTGG	1 cut(s)	190
PkrI	GCNGC	4 cut(s)	169, 679, 682, 685
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	233, 352
PspFI	CCCAGC	2 cut(s)	402, 513
PspGI	CCWGG	2 cut(s)	233, 352
PspN4I	GGNNCC	2 cut(s)	401, 595
PspPI	GGNCC	2 cut(s)	322, 399
PstI	CTGCAG	1 cut(s)	679
PstNI	CAGNNNCTG	1 cut(s)	683
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
RseI	CAYNNNNRTG	1 cut(s)	204
SatI	GCNGC	4 cut(s)	168, 678, 681, 684
Sau3AI	GATC	1 cut(s)	225
Sau96I	GGNCC	2 cut(s)	322, 399
ScaI	AGTACT	1 cut(s)	139
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	235, 354
SexAI	ACCWGGT	1 cut(s)	352
SfaNI	GCATC	2 cut(s)	154, 695
SfcI	CTRYAG	1 cut(s)	675
SinI	GGWCC	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	2 cut(s)	63, 566
SmoI	CTYRAG	2 cut(s)	63, 566
Sse9I	AATT	1 cut(s)	176
SseBI	AGGCCT	1 cut(s)	238
SsiI	CCGC	2 cut(s)	325, 632
StuI	AGGCCT	1 cut(s)	238
StyD4I	CCNGG	2 cut(s)	233, 352
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	1 cut(s)	271
TasI	AATT	1 cut(s)	176
TatI	WGTACW	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	105
TscAI	CASTG	1 cut(s)	588
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	4 cut(s)	167, 677, 680, 683
Tsp45I	GTSAC	1 cut(s)	5
TspRI	CASTG	1 cut(s)	588
Van91I	CCANNNNNTGG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	399
XceI	RCATGY	1 cut(s)	301
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
ZrmI	AGTACT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.