Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002648

Physical Location & Seq

Genomic Coordinates Forward (+)

55367025 .. 55368975

Gene Structure 1951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG353400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAGTCGCGGAGCAGTTGCCGGAGCCAAGGGCAAGAAGAAGGGAGCTTCGTTCGTGATTGACTGCGGGAAGCCGGTGGAGGATAAGATCATGGACATCGCCTCACTGGAGAAGTTCCTCCAGGAGCGTATCAAGGTCGGCGGCAAGGCCGGAGCTCTCGGTGACTCTGTTACCGTTTCTCGTGAGAAGAACAAGATCACCGTCACTTCTGACAACACATTCTCCAAGAGGTACGTGCCTTTGCTTAGCTTGTCGTCTATTTTTACAGATCTGGTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22e

Protein Analysis

93

Amino Acids

9.88

Weight (kDa)

9.67

Isoelectric Point (pI)

24.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22e	PF01776	14 - 82	4.5e-23	Ribosomal L22e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05560 AT3G05560 AT3G05560 AT5G27770
fragaria_vesca	FvH4_2g25750 FvH4_7g11630
malus_domestica	MD02G1205500.v1.1 MD03G1288500.v1.1 MD07G1121900.v1.1 MD11G1309600.v1.1
prunus_persica	Prupe.2G144300_v2.0.a1 Prupe.8G261700_v2.0.a1
pyrus_communis	pycom02g16730 pycom07g10430
rosa_chinensis	RchiOBHm_Chr1g0350181 RchiOBHm_Chr6g0294041
rosa_laevigata	RLG00000011904 RLG00000028500
rosa_multiflora	Rmu_co8031908.1_g000001 Rmu_sc0010426.1_g000003 Rmu_sc0030988.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305030 Rroxscaffold_7G00173700
rosa_rugosa	Rorug01G0209000 Rorug01G0209100 Rorug01G0209200 Rorug06G0240500 Rorug06G0240500
rosa_samantha	Rh1AG224900 Rh1BG192800 Rh1CG209700 Rh1DG221200 Rh6AG353400 Rh6BG360300 Rh6CG367500 Rh6DG354200
rosa_wichuraiana	Rw1G013180 Rw1G019230 Rw1G019330 Rw6G030790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	9
AciI	CCGC	3 cut(s)	9, 66, 141
AfaI	GTAC	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	3 cut(s)	47, 155, 249
AluI	AGCT	3 cut(s)	47, 155, 249
Alw21I	GWGCWC	1 cut(s)	157
AoxI	GGCC	1 cut(s)	147
AsuHPI	GGTGA	2 cut(s)	173, 190
BanII	GRGCYC	1 cut(s)	157
BauI	CACGAG	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	157
BciT130I	CCWGG	1 cut(s)	122
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	1 cut(s)	142
BlpI	GCTNAGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	122
BpmI	CTGGAG	2 cut(s)	104, 128
Bpu1102I	GCTNAGC	1 cut(s)	245
BsaAI	YACGTR	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	27
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bse118I	RCCGGY	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	157
BsiSI	CCGG	3 cut(s)	21, 74, 150
BsnI	GGCC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	3 cut(s)	87, 195, 268
Bsp1720I	GCTNAGC	1 cut(s)	245
BspACI	CCGC	3 cut(s)	9, 66, 141
BspANI	GGCC	1 cut(s)	149
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	111
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	3 cut(s)	87, 195, 268
BssSI	CACGAG	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	175, 202
BstBAI	YACGTR	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	245
BstFNI	CGCG	1 cut(s)	9
BstKTI	GATC	3 cut(s)	90, 198, 271
BstMBI	GATC	3 cut(s)	87, 195, 268
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	120
BstUI	CGCG	1 cut(s)	9
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	149
BtgZI	GCGATG	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	104
Cfr10I	RCCGGY	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	2 cut(s)	91, 279
CviJI	RGCY	6 cut(s)	26, 47, 73, 149, 155, 249
CviKI_1	RGCY	6 cut(s)	26, 47, 73, 149, 155, 249
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	1 cut(s)	245
DpnI	GATC	3 cut(s)	89, 197, 270
DpnII	GATC	3 cut(s)	87, 195, 268
Ecl136II	GAGCTC	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	2 cut(s)	94, 282
FaiI	YATR	2 cut(s)	92, 280
FatI	CATG	2 cut(s)	90, 278
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	1 cut(s)	142
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	1 cut(s)	142
GluI	GCNGC	1 cut(s)	142
GsuI	CTGGAG	2 cut(s)	104, 128
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	3 cut(s)	21, 74, 150
Hin1II	CATG	2 cut(s)	94, 282
HinfI	GANTC	2 cut(s)	4, 164
HpaII	CCGG	3 cut(s)	21, 74, 150
HphI	GGTGA	2 cut(s)	173, 190
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	2 cut(s)	55, 182
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	2 cut(s)	175, 202
HpyCH4IV	ACGT	1 cut(s)	234
HpyF3I	CTNAG	1 cut(s)	245
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	2 cut(s)	94, 282
Kzo9I	GATC	3 cut(s)	87, 195, 268
LmnI	GCTCC	5 cut(s)	11, 23, 44, 124, 152
LpnPI	CCDG	7 cut(s)	34, 87, 92, 107, 134, 163, 257
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	3 cut(s)	161, 169, 202
MalI	GATC	3 cut(s)	89, 197, 270
MboI	GATC	3 cut(s)	87, 195, 268
MboII	GAAGA	2 cut(s)	49, 199
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	157
MlyI	GAGTC	2 cut(s)	13, 158
MnlI	CCTC	4 cut(s)	73, 112, 128, 222
MspI	CCGG	3 cut(s)	21, 74, 150
MspR9I	CCNGG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	9
NdeII	GATC	3 cut(s)	87, 195, 268
NlaIII	CATG	2 cut(s)	94, 282
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	2 cut(s)	161, 202
PfoI	TCCNGGA	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	143
PleI	GAGTC	2 cut(s)	12, 158
PpsI	GAGTC	2 cut(s)	12, 158
Ppu21I	YACGTR	1 cut(s)	235
Psp124BI	GAGCTC	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SacI	GAGCTC	1 cut(s)	157
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	3 cut(s)	87, 195, 268
SchI	GAGTC	2 cut(s)	13, 158
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	6 cut(s)	49, 138, 157, 233, 237, 251
SsiI	CCGC	3 cut(s)	9, 66, 141
SstI	GAGCTC	1 cut(s)	157
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	175, 202
TaiI	ACGT	1 cut(s)	237
TauI	GCSGC	1 cut(s)	144
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	2 cut(s)	161, 202
Tsp45I	GTSAC	2 cut(s)	161, 202
TspRI	CASTG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.