Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002648

Physical Location & Seq

Genomic Coordinates Forward (+)

9835884 .. 9837428

Gene Structure 1545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G27770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAGTCGTGGTAACGCAGCAGCAGCTAAGGGAAAGAAGAAGGGAGTTTCCTTCACTATCGATTGTTCTAAACCTGTGGATGATAAGATTATGGAGATTGCTTCTTTAGAGAAGTTTCTTCAGGAGAGGATTAAGGTTGGTGGTAAAGCTGGTGCTCTTGGTGATTCTGTTTCTATCACTCGTGAGAAGAGCAAGATCACTGTCACTGCTGATGGTCAATTCTCCAAGAGGTATCTTAAGTACTTGACAAAGAAGTACTTGAAGAAGCACAACGTGAGGGATTGGCTTAGAGTGATTGCGGCGAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACATTGCCGAGAACGAAGCTGAGGAAGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22e

Protein Analysis

124

Amino Acids

14.05

Weight (kDa)

9.57

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22e	PF01776	14 - 123	1.6e-46	Ribosomal L22e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05560 AT3G05560 AT3G05560 AT5G27770
fragaria_vesca	FvH4_2g25750 FvH4_7g11630
malus_domestica	MD02G1205500.v1.1 MD03G1288500.v1.1 MD07G1121900.v1.1 MD11G1309600.v1.1
prunus_persica	Prupe.2G144300_v2.0.a1 Prupe.8G261700_v2.0.a1
pyrus_communis	pycom02g16730 pycom07g10430
rosa_chinensis	RchiOBHm_Chr1g0350181 RchiOBHm_Chr6g0294041
rosa_laevigata	RLG00000011904 RLG00000028500
rosa_multiflora	Rmu_co8031908.1_g000001 Rmu_sc0010426.1_g000003 Rmu_sc0030988.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305030 Rroxscaffold_7G00173700
rosa_rugosa	Rorug01G0209000 Rorug01G0209100 Rorug01G0209200 Rorug06G0240500 Rorug06G0240500
rosa_samantha	Rh1AG224900 Rh1BG192800 Rh1CG209700 Rh1DG221200 Rh6AG353400 Rh6BG360300 Rh6CG367500 Rh6DG354200
rosa_wichuraiana	Rw1G013180 Rw1G019230 Rw1G019330 Rw6G030790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	299
AcuI	CTGAAG	1 cut(s)	104
AdeI	CACNNNGTG	1 cut(s)	274
AfaI	GTAC	3 cut(s)	242, 257, 335
AflII	CTTAAG	1 cut(s)	236
AgsI	TTSAA	2 cut(s)	262, 340
AluBI	AGCT	3 cut(s)	26, 149, 359
AluI	AGCT	3 cut(s)	26, 149, 359
Alw21I	GWGCWC	1 cut(s)	157
ApeKI	GCWGC	3 cut(s)	17, 20, 23
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	310
BauI	CACGAG	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	157
BbvCI	CCTCAGC	1 cut(s)	360
BbvI	GCAGC	3 cut(s)	29, 32, 35
BccI	CCATC	1 cut(s)	206
BfrI	CTTAAG	1 cut(s)	236
BisI	GCNGC	4 cut(s)	18, 21, 24, 300
BlsI	GCNGC	4 cut(s)	19, 22, 25, 301
BmcAI	AGTACT	2 cut(s)	242, 257
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	310
Bpu10I	CCTNAGC	2 cut(s)	27, 360
Bsa29I	ATCGAT	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	342
BseCI	ATCGAT	1 cut(s)	60
BseGI	GGATG	1 cut(s)	85
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	351
BseXI	GCAGC	3 cut(s)	29, 32, 35
BshVI	ATCGAT	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	195
BspACI	CCGC	1 cut(s)	299
BspCNI	CTCAG	1 cut(s)	352
BspDI	ATCGAT	1 cut(s)	60
BspQI	GCTCTTC	1 cut(s)	182
BspTI	CTTAAG	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	342
BssMI	GATC	1 cut(s)	195
BssSI	CACGAG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	180
Bst4CI	ACNGT	2 cut(s)	202, 314
Bst6I	CTCTTC	1 cut(s)	182
BstAFI	CTTAAG	1 cut(s)	236
BstDEI	CTNAG	3 cut(s)	27, 287, 360
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstV1I	GCAGC	3 cut(s)	29, 32, 35
Bsu15I	ATCGAT	1 cut(s)	60
BsuTUI	ATCGAT	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	198, 204
Cfr13I	GGNCC	1 cut(s)	310
ClaI	ATCGAT	1 cut(s)	60
Csp6I	GTAC	3 cut(s)	241, 256, 334
CviJI	RGCY	4 cut(s)	26, 149, 286, 359
CviKI_1	RGCY	4 cut(s)	26, 149, 286, 359
CviQI	GTAC	3 cut(s)	241, 256, 334
DdeI	CTNAG	3 cut(s)	27, 287, 360
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
DraIII	CACNNNGTG	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	104
FaiI	YATR	2 cut(s)	92, 324
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
Fnu4HI	GCNGC	4 cut(s)	18, 21, 24, 300
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	4 cut(s)	18, 21, 24, 300
GluI	GCNGC	4 cut(s)	18, 21, 24, 300
HinfI	GANTC	2 cut(s)	4, 164
HphI	GGTGA	1 cut(s)	173
Hpy188III	TCNNGA	2 cut(s)	122, 182
HpyAV	CCTTC	2 cut(s)	34, 61
HpyCH4III	ACNGT	2 cut(s)	202, 314
HpyCH4IV	ACGT	1 cut(s)	273
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	3 cut(s)	27, 287, 360
HpySE526I	ACGT	1 cut(s)	273
Kzo9I	GATC	1 cut(s)	195
LguI	GCTCTTC	1 cut(s)	182
LpnPI	CCDG	3 cut(s)	87, 107, 135
Lsp1109I	GCAGC	3 cut(s)	29, 32, 35
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	3 cut(s)	11, 202, 314
MalI	GATC	1 cut(s)	197
MboI	GATC	1 cut(s)	195
MboII	GAAGA	4 cut(s)	49, 110, 199, 274
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	1 cut(s)	218
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	6 cut(s)	120, 222, 270, 324, 329, 355
MseI	TTAA	3 cut(s)	132, 237, 373
MspCI	CTTAAG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	1 cut(s)	195
NmeAIII	GCCGAG	1 cut(s)	373
NmuCI	GTSAC	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	4 cut(s)	19, 22, 25, 301
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	310
RsaI	GTAC	3 cut(s)	242, 257, 335
RsaNI	GTAC	3 cut(s)	241, 256, 334
SapI	GCTCTTC	1 cut(s)	182
SaqAI	TTAA	3 cut(s)	132, 237, 373
SatI	GCNGC	4 cut(s)	18, 21, 24, 300
Sau3AI	GATC	1 cut(s)	195
Sau96I	GGNCC	1 cut(s)	310
ScaI	AGTACT	2 cut(s)	242, 257
SchI	GAGTC	1 cut(s)	13
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	9 cut(s)	28, 76, 138, 151, 233, 276, 321, 335, 361
SinI	GGWCC	1 cut(s)	310
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	1 cut(s)	218
SsiI	CCGC	1 cut(s)	299
TaaI	ACNGT	2 cut(s)	202, 314
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	60
TasI	AATT	1 cut(s)	218
TatI	WGTACW	2 cut(s)	240, 255
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	3 cut(s)	132, 237, 373
Tru9I	TTAA	3 cut(s)	132, 237, 373
TscAI	CASTG	2 cut(s)	205, 211
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	3 cut(s)	17, 20, 23
Tsp45I	GTSAC	1 cut(s)	202
TspRI	CASTG	2 cut(s)	205, 211
Vha464I	CTTAAG	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	310
ZrmI	AGTACT	2 cut(s)	242, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.