Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002648

Physical Location & Seq

Genomic Coordinates Reverse (-)

15601319 .. 15603408

Gene Structure 2090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1121900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGACATTGCATCCCTGGAGAAGTTTCTTCAGGAGAGGATCAAGGTCGGAGGCAAGGCTGGTGCACTTGGCGATGCTGTCAGTGTGACCCGTGAGAAGAGCAAGATCACTGTCACCTCTGACAGCAACTTCTCAAAGAGGTATCTGAAGTACTTGACAAAGAAGTATCTAAAGAAGCACAACGTGCGAGATTGGCTACGAGTGATTGCTTCCAACAAGGATAGAAACGTCTACGAACTGAGGTACTTCAACATTGCCGACAATGAAGGGGAGGAGGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22e

Protein Analysis

95

Amino Acids

10.9

Weight (kDa)

9.33

Isoelectric Point (pI)

31.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22e	PF01776	1 - 93	2.3e-38	Ribosomal L22e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05560 AT3G05560 AT3G05560 AT5G27770
fragaria_vesca	FvH4_2g25750 FvH4_7g11630
malus_domestica	MD02G1205500.v1.1 MD03G1288500.v1.1 MD07G1121900.v1.1 MD11G1309600.v1.1
prunus_persica	Prupe.2G144300_v2.0.a1 Prupe.8G261700_v2.0.a1
pyrus_communis	pycom02g16730 pycom07g10430
rosa_chinensis	RchiOBHm_Chr1g0350181 RchiOBHm_Chr6g0294041
rosa_laevigata	RLG00000011904 RLG00000028500
rosa_multiflora	Rmu_co8031908.1_g000001 Rmu_sc0010426.1_g000003 Rmu_sc0030988.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305030 Rroxscaffold_7G00173700
rosa_rugosa	Rorug01G0209000 Rorug01G0209100 Rorug01G0209200 Rorug06G0240500 Rorug06G0240500
rosa_samantha	Rh1AG224900 Rh1BG192800 Rh1CG209700 Rh1DG221200 Rh6AG353400 Rh6BG360300 Rh6CG367500 Rh6DG354200
rosa_wichuraiana	Rw1G013180 Rw1G019230 Rw1G019330 Rw6G030790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	231
AclWI	GGATC	1 cut(s)	47
AcuI	CTGAAG	2 cut(s)	14, 167
AdeI	CACNNNGTG	1 cut(s)	184
AfaI	GTAC	2 cut(s)	152, 245
AgsI	TTSAA	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	15
Alw21I	GWGCWC	1 cut(s)	67
Alw44I	GTGCAC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	47
ApaLI	GTGCAC	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	106
BaeGI	GKGCMC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	17
BmcAI	AGTACT	1 cut(s)	152
Bme1390I	CCNGG	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	2 cut(s)	20, 64
BpmI	CTGGAG	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	15
Bse3DI	GCAATG	2 cut(s)	6, 252
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	11
BseMI	GCAATG	2 cut(s)	6, 252
BseMII	CTCAG	1 cut(s)	230
BseSI	GKGCMC	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	2 cut(s)	39, 105
BspCNI	CTCAG	1 cut(s)	231
BspPI	GGATC	1 cut(s)	47
BspQI	GCTCTTC	1 cut(s)	92
BsrDI	GCAATG	2 cut(s)	6, 252
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	2 cut(s)	39, 105
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	92
BstAPI	GCANNNNNTGC	1 cut(s)	184
BstDEI	CTNAG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	11
BstKTI	GATC	2 cut(s)	42, 108
BstMBI	GATC	2 cut(s)	39, 105
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 193
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	15
BstSLI	GKGCMC	1 cut(s)	67
BtgZI	GCGATG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	11
BtsIMutI	CAGTG	2 cut(s)	88, 108
Csp6I	GTAC	2 cut(s)	151, 244
CviJI	RGCY	2 cut(s)	59, 196
CviKI_1	RGCY	2 cut(s)	59, 196
CviQI	GTAC	2 cut(s)	151, 244
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	2 cut(s)	41, 107
DpnII	GATC	2 cut(s)	39, 105
DraIII	CACNNNGTG	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco57I	CTGAAG	2 cut(s)	14, 167
EcoRII	CCWGG	1 cut(s)	15
FblI	GTMKAC	1 cut(s)	231
GsuI	CTGGAG	1 cut(s)	38
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	65, 232
Hpy188I	TCNGA	3 cut(s)	50, 121, 147
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	2 cut(s)	65, 232
HpyAV	CCTTC	1 cut(s)	260
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	2 cut(s)	183, 228
HpyCH4V	TGCA	2 cut(s)	11, 65
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 193
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	2 cut(s)	183, 228
Kzo9I	GATC	2 cut(s)	39, 105
LguI	GCTCTTC	1 cut(s)	92
LpnPI	CCDG	4 cut(s)	2, 17, 29, 45
LweI	GCATC	2 cut(s)	20, 64
MaeII	ACGT	2 cut(s)	183, 228
MaeIII	GTNAC	2 cut(s)	85, 112
MalI	GATC	2 cut(s)	41, 107
MboI	GATC	2 cut(s)	39, 105
MboII	GAAGA	2 cut(s)	20, 109
MhlI	GDGCHC	1 cut(s)	67
MmeI	TCCRAC	2 cut(s)	28, 237
MnlI	CCTC	7 cut(s)	30, 44, 127, 132, 234, 265, 268
MseI	TTAA	1 cut(s)	283
MspR9I	CCNGG	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	184, 193
NdeII	GATC	2 cut(s)	39, 105
NmuCI	GTSAC	2 cut(s)	85, 112
PciSI	GCTCTTC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
RsaI	GTAC	2 cut(s)	152, 245
RsaNI	GTAC	2 cut(s)	151, 244
SapI	GCTCTTC	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	283
Sau3AI	GATC	2 cut(s)	39, 105
ScaI	AGTACT	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	17
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	6 cut(s)	48, 119, 143, 186, 231, 245
SfaNI	GCATC	2 cut(s)	20, 64
StyD4I	CCNGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	2 cut(s)	186, 231
TatI	WGTACW	1 cut(s)	150
Tru1I	TTAA	1 cut(s)	283
Tru9I	TTAA	1 cut(s)	283
TscAI	CASTG	2 cut(s)	88, 115
TseFI	GTSAC	2 cut(s)	85, 112
Tsp45I	GTSAC	2 cut(s)	85, 112
TspDTI	ATGAA	1 cut(s)	279
TspRI	CASTG	2 cut(s)	88, 115
VneI	GTGCAC	1 cut(s)	63
XmiI	GTMKAC	1 cut(s)	231
ZrmI	AGTACT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.