Rroxscaffold_4G00305030

60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002648
Physical Location & Seq
Reverse (-)
25679460 .. 25681486
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00305030.1

Sequence Viewer

Length: 285 bp
ATGGATATTGCATCCCTTGAGAAATTTCTCCAGGAGAGGATCAAGGTTGGAGGCAAGGCTGGTGCCCTTGGTGACGCTGTTACTGTGACTCGTGACAAGAGCAAGCTGACTGTCTCCTCTGACAACAACTTCTCTAAGAGATATCTGAAGTACTTGACCAAAAAGTATCTGAAGAAACACAACGTCCGAGACTGGCTTCGTGTTATTGCTTCCAACAAGGACCGAAATGTCTATGAATTGAGGTACTTCAACATAGCTGAGAATGAAGCAGAGGAGGAAGATTGA

Protein Analysis

94

Amino Acids

10.94

Weight (kDa)

9.33

Isoelectric Point (pI)

32.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L22e PF01776 1 - 93 5.7e-38 Ribosomal L22e protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AccB1I GGYRCC 1 cut(s) 62
AclWI GGATC 1 cut(s) 47
AcsI RAATTY 1 cut(s) 23
AcuI CTGAAG 2 cut(s) 167, 191
AfaI GTAC 2 cut(s) 152, 245
AgsI TTSAA 1 cut(s) 250
AjnI CCWGG 1 cut(s) 30
AluBI AGCT 2 cut(s) 106, 257
AluI AGCT 2 cut(s) 106, 257
Alw26I GTCTC 2 cut(s) 118, 183
AlwI GGATC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 83
AvaII GGWCC 1 cut(s) 220
BaeGI GKGCMC 1 cut(s) 67
BanI GGYRCC 1 cut(s) 62
BauI CACGAG 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 32
BcoDI GTCTC 2 cut(s) 118, 183
BmcAI AGTACT 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 32
BmsI GCATC 1 cut(s) 20
BpmI CTGGAG 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 197
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 67
BseGI GGATG 1 cut(s) 11
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 106
BseSI GKGCMC 1 cut(s) 67
BshNI GGYRCC 1 cut(s) 62
BsmAI GTCTC 2 cut(s) 118, 183
Bsp1286I GDGCHC 1 cut(s) 67
Bsp143I GATC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 62
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 1 cut(s) 39
BssSI CACGAG 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 67
Bst2BI CACGAG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 2 cut(s) 85, 112
BstC8I GCNNGC 1 cut(s) 104
BstDEI CTNAG 2 cut(s) 135, 258
BstF5I GGATG 1 cut(s) 11
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 2 cut(s) 118, 183
BstMBI GATC 1 cut(s) 39
BstNI CCWGG 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 67
BtsCI GGATG 1 cut(s) 11
Cac8I GCNNGC 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 220
CseI GACGC 1 cut(s) 83
Csp6I GTAC 2 cut(s) 151, 244
CviJI RGCY 4 cut(s) 59, 106, 196, 257
CviKI_1 RGCY 4 cut(s) 59, 106, 196, 257
CviQI GTAC 2 cut(s) 151, 244
DdeI CTNAG 2 cut(s) 135, 258
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 67
Eco32I GATATC 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 220
Eco57I CTGAAG 2 cut(s) 167, 191
EcoRII CCWGG 1 cut(s) 30
EcoRV GATATC 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
FaiI YATR 2 cut(s) 234, 254
GsuI CTGGAG 1 cut(s) 14
HgaI GACGC 1 cut(s) 83
HinfI GANTC 1 cut(s) 88
HphI GGTGA 1 cut(s) 83
Hpy188I TCNGA 4 cut(s) 121, 147, 171, 188
Hpy188III TCNNGA 1 cut(s) 92
HpyCH4III ACNGT 2 cut(s) 85, 112
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 135, 258
HpySE526I ACGT 1 cut(s) 183
Kzo9I GATC 1 cut(s) 39
LpnPI CCDG 4 cut(s) 17, 44, 45, 178
LweI GCATC 1 cut(s) 20
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 4 cut(s) 71, 79, 85, 92
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 2 cut(s) 23, 236
MlyI GAGTC 1 cut(s) 82
MmeI TCCRAC 2 cut(s) 28, 237
MnlI CCTC 6 cut(s) 30, 44, 127, 234, 265, 268
MspR9I CCNGG 1 cut(s) 32
MvaI CCWGG 1 cut(s) 32
NdeII GATC 1 cut(s) 39
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 3 cut(s) 71, 85, 92
PfoI TCCNGGA 1 cut(s) 30
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 1 cut(s) 220
RsaI GTAC 2 cut(s) 152, 245
RsaNI GTAC 2 cut(s) 151, 244
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 1 cut(s) 220
ScaI AGTACT 1 cut(s) 152
SchI GAGTC 1 cut(s) 82
ScrFI CCNGG 1 cut(s) 32
SduI GDGCHC 1 cut(s) 67
SetI ASST 5 cut(s) 48, 108, 186, 245, 259
SfaNI GCATC 1 cut(s) 20
SinI GGWCC 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 2 cut(s) 23, 236
StyD4I CCNGG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 2 cut(s) 85, 112
TaiI ACGT 1 cut(s) 186
TaqII GACCGA 1 cut(s) 237
TasI AATT 2 cut(s) 23, 236
TatI WGTACW 1 cut(s) 150
TseFI GTSAC 3 cut(s) 71, 85, 92
Tsp45I GTSAC 3 cut(s) 71, 85, 92
TspDTI ATGAA 2 cut(s) 249, 279
VpaK11BI GGWCC 1 cut(s) 220
XapI RAATTY 1 cut(s) 23
ZrmI AGTACT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.