Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002648

Physical Location & Seq

Genomic Coordinates Forward (+)

43043601 .. 43047079

Gene Structure 3479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG221200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAGTCGAGGAGCTGCAGCAGGCCCCAAGGGGAAGAAGAAGGGAGTGGCTTTTACCATTGATTGTGGTAAGCCAGTAGAAGACAAGATCATGGATATTGCATCCCTCGAGAAGTTTCTCCAGGAGAGGATCAAGGTTGGAGGCAAGGCTGGTGCCCTTGGGGATACTGTTACTGTGACTCGTGACAAGAGCAAGCTGACCGTCTCCTCTGACAACAACTTCTCTAAGAGATATCTGAAGTACTTGACCAAAAAGTATCTGAAGAAACACAACGTCCGAGACTGGCTTCGTGTTATTTCTTCCAACAAGGACCGAAATGTCTATGAATTGAGGTACTTCAACATAGCTGAGAATGAAGCAGAGGAGGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22e

Protein Analysis

124

Amino Acids

14.03

Weight (kDa)

9.57

Isoelectric Point (pI)

29.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22e	PF01776	14 - 123	2.7e-46	Ribosomal L22e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05560 AT3G05560 AT3G05560 AT5G27770
fragaria_vesca	FvH4_2g25750 FvH4_7g11630
malus_domestica	MD02G1205500.v1.1 MD03G1288500.v1.1 MD07G1121900.v1.1 MD11G1309600.v1.1
prunus_persica	Prupe.2G144300_v2.0.a1 Prupe.8G261700_v2.0.a1
pyrus_communis	pycom02g16730 pycom07g10430
rosa_chinensis	RchiOBHm_Chr1g0350181 RchiOBHm_Chr6g0294041
rosa_laevigata	RLG00000011904 RLG00000028500
rosa_multiflora	Rmu_co8031908.1_g000001 Rmu_sc0010426.1_g000003 Rmu_sc0030988.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305030 Rroxscaffold_7G00173700
rosa_rugosa	Rorug01G0209000 Rorug01G0209100 Rorug01G0209200 Rorug06G0240500 Rorug06G0240500
rosa_samantha	Rh1AG224900 Rh1BG192800 Rh1CG209700 Rh1DG221200 Rh6AG353400 Rh6BG360300 Rh6CG367500 Rh6DG354200
rosa_wichuraiana	Rw1G013180 Rw1G019230 Rw1G019330 Rw6G030790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	317
AccB1I	GGYRCC	1 cut(s)	152
AclWI	GGATC	1 cut(s)	137
AcuI	CTGAAG	2 cut(s)	257, 281
AfaI	GTAC	2 cut(s)	242, 335
AgsI	TTSAA	1 cut(s)	340
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	3 cut(s)	14, 196, 347
AluI	AGCT	3 cut(s)	14, 196, 347
Alw26I	GTCTC	2 cut(s)	208, 273
AlwI	GGATC	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	2 cut(s)	14, 17
AspS9I	GGNCC	2 cut(s)	23, 310
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	310
BaeGI	GKGCMC	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	152
BauI	CACGAG	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	122
BciVI	GTATCC	1 cut(s)	157
BcoDI	GTCTC	2 cut(s)	208, 273
BfmI	CTRYAG	1 cut(s)	15
BfuI	GTATCC	1 cut(s)	157
BisI	GCNGC	2 cut(s)	15, 18
BlsI	GCNGC	2 cut(s)	16, 19
BmcAI	AGTACT	1 cut(s)	242
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	1 cut(s)	310
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	2 cut(s)	23, 310
BmiI	GGNNCC	2 cut(s)	25, 154
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	27, 157
Bse1I	ACTGG	2 cut(s)	74, 287
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	27, 157
BseGI	GGATG	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	2 cut(s)	74, 287
BseRI	GAGGAG	2 cut(s)	24, 196
BseSI	GKGCMC	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	29
BshFI	GGCC	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	152
BsiHKCI	CYCGRG	1 cut(s)	107
BsmAI	GTCTC	2 cut(s)	208, 273
BsmBI	CGTCTC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	24
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	87, 129
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	1 cut(s)	340
BspLI	GGNNCC	2 cut(s)	25, 154
BspMAI	CTGCAG	1 cut(s)	19
BspPI	GGATC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	74, 287
BssECI	CCNNGG	2 cut(s)	27, 157
BssMI	GATC	2 cut(s)	87, 129
BssSI	CACGAG	1 cut(s)	180
BssT1I	CCWWGG	2 cut(s)	27, 157
Bst2BI	CACGAG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	3 cut(s)	169, 175, 202
BstC8I	GCNNGC	2 cut(s)	22, 194
BstDEI	CTNAG	2 cut(s)	225, 348
BstF5I	GGATG	1 cut(s)	101
BstKTI	GATC	2 cut(s)	90, 132
BstMAI	GTCTC	2 cut(s)	208, 273
BstMBI	GATC	2 cut(s)	87, 129
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	1 cut(s)	15
BstSLI	GKGCMC	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	87
BsuI	GTATCC	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	101
Cac8I	GCNNGC	2 cut(s)	22, 194
Cfr13I	GGNCC	2 cut(s)	23, 310
Csp6I	GTAC	2 cut(s)	241, 334
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	8 cut(s)	14, 24, 50, 73, 149, 196, 286, 347
CviKI_1	RGCY	8 cut(s)	14, 24, 50, 73, 149, 196, 286, 347
CviQI	GTAC	2 cut(s)	241, 334
DdeI	CTNAG	2 cut(s)	225, 348
DpnI	GATC	2 cut(s)	89, 131
DpnII	GATC	2 cut(s)	87, 129
DrdI	GACNNNNNNGTC	1 cut(s)	317
DseDI	GACNNNNNNGTC	1 cut(s)	317
Eco130I	CCWWGG	2 cut(s)	27, 157
Eco32I	GATATC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	310
Eco57I	CTGAAG	2 cut(s)	257, 281
Eco88I	CYCGRG	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	120
EcoRV	GATATC	1 cut(s)	233
EcoT14I	CCWWGG	2 cut(s)	27, 157
ErhI	CCWWGG	2 cut(s)	27, 157
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	1 cut(s)	94
FaiI	YATR	3 cut(s)	92, 324, 344
FatI	CATG	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	15, 18
FokI	GGATG	1 cut(s)	88
Fsp4HI	GCNGC	2 cut(s)	15, 18
GluI	GCNGC	2 cut(s)	15, 18
GsuI	CTGGAG	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	94
HinfI	GANTC	2 cut(s)	4, 178
Hpy188I	TCNGA	4 cut(s)	211, 237, 261, 278
Hpy188III	TCNNGA	2 cut(s)	109, 182
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	3 cut(s)	169, 175, 202
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	2 cut(s)	17, 101
HpyF3I	CTNAG	2 cut(s)	225, 348
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	87, 129
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	6 cut(s)	6, 87, 107, 134, 135, 268
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	1 cut(s)	110
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	3 cut(s)	169, 175, 182
MalI	GATC	2 cut(s)	89, 131
MboI	GATC	2 cut(s)	87, 129
MboII	GAAGA	5 cut(s)	46, 49, 92, 274, 291
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	1 cut(s)	326
MlyI	GAGTC	2 cut(s)	13, 172
MmeI	TCCRAC	2 cut(s)	118, 327
MnlI	CCTC	7 cut(s)	116, 120, 134, 217, 324, 355, 358
MspR9I	CCNGG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	122
NdeII	GATC	2 cut(s)	87, 129
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	2 cut(s)	25, 154
NmuCI	GTSAC	2 cut(s)	175, 182
PaeR7I	CTCGAG	1 cut(s)	107
PfoI	TCCNGGA	1 cut(s)	120
PkrI	GCNGC	2 cut(s)	16, 19
PleI	GAGTC	2 cut(s)	12, 172
PpsI	GAGTC	2 cut(s)	12, 172
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	25, 154
PspPI	GGNCC	2 cut(s)	23, 310
PstI	CTGCAG	1 cut(s)	19
RsaI	GTAC	2 cut(s)	242, 335
RsaNI	GTAC	2 cut(s)	241, 334
SatI	GCNGC	2 cut(s)	15, 18
Sau3AI	GATC	2 cut(s)	87, 129
Sau96I	GGNCC	2 cut(s)	23, 310
ScaI	AGTACT	1 cut(s)	242
SchI	GAGTC	2 cut(s)	13, 172
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	6 cut(s)	16, 138, 198, 276, 335, 349
SfaNI	GCATC	1 cut(s)	110
SfcI	CTRYAG	1 cut(s)	15
Sfr274I	CTCGAG	1 cut(s)	107
SinI	GGWCC	1 cut(s)	310
SlaI	CTCGAG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	2 cut(s)	27, 157
TaaI	ACNGT	3 cut(s)	169, 175, 202
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	2 cut(s)	7, 108
TaqII	GACCGA	1 cut(s)	327
TasI	AATT	1 cut(s)	326
TatI	WGTACW	1 cut(s)	240
TseFI	GTSAC	2 cut(s)	175, 182
TseI	GCWGC	2 cut(s)	14, 17
Tsp45I	GTSAC	2 cut(s)	175, 182
TspDTI	ATGAA	2 cut(s)	339, 369
VpaK11BI	GGWCC	1 cut(s)	310
XhoI	CTCGAG	1 cut(s)	107
ZrmI	AGTACT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.