Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002648

Physical Location & Seq

Genomic Coordinates Reverse (-)

29540240 .. 29542083

Gene Structure 1844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0209100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAGCAAATAATGATGATATCGGTGAGGTTTGTGGCTATTCAATCTGTAGTGGTGTTGTGGTTTGTGGAAAGAGACTCAAGTGCTTGGGCCTTAAACCCTAAGTTAAGGGAGTTTTTGGCTCAGCGTTCCAGGTTGGTGTTCCAGGTTGGACTTTTTAGTCTTGTTCCGCTTCGCAAGGTTATGGTTATGGATTACAAACTTACATACCCCAGTGGGACTGCCACAACAATGTTGATCAATAGCTTTCACACTAGAAGTGGTGCAGAGATTGCTGGGAAGCAAGTGCAATGTCTTGGAAAGTATCTAAGCATGAGTTTAATTTGGAGCTGCTTTAAGTGGTTCTTCAGTGGTATTGGAGATTCATGTGGGTTTGACAACTTTCCTAGCCTTGGATTGACACTTTTTAAGAACACGTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22e

Protein Analysis

141

Amino Acids

15.96

Weight (kDa)

9.55

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	50 - 136	1.6e-15	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05560 AT3G05560 AT3G05560 AT5G27770
fragaria_vesca	FvH4_2g25750 FvH4_7g11630
malus_domestica	MD02G1205500.v1.1 MD03G1288500.v1.1 MD07G1121900.v1.1 MD11G1309600.v1.1
prunus_persica	Prupe.2G144300_v2.0.a1 Prupe.8G261700_v2.0.a1
pyrus_communis	pycom02g16730 pycom07g10430
rosa_chinensis	RchiOBHm_Chr1g0350181 RchiOBHm_Chr6g0294041
rosa_laevigata	RLG00000011904 RLG00000028500
rosa_multiflora	Rmu_co8031908.1_g000001 Rmu_sc0010426.1_g000003 Rmu_sc0030988.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305030 Rroxscaffold_7G00173700
rosa_rugosa	Rorug01G0209000 Rorug01G0209100 Rorug01G0209200 Rorug06G0240500 Rorug06G0240500
rosa_samantha	Rh1AG224900 Rh1BG192800 Rh1CG209700 Rh1DG221200 Rh6AG353400 Rh6BG360300 Rh6CG367500 Rh6DG354200
rosa_wichuraiana	Rw1G013180 Rw1G019230 Rw1G019330 Rw6G030790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	159
AciI	CCGC	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	331
AfiI	CCNNNNNNNGG	1 cut(s)	392
AflIII	ACRYGT	1 cut(s)	414
AgsI	TTSAA	1 cut(s)	44
AjiI	CACGTC	1 cut(s)	417
AjnI	CCWGG	2 cut(s)	131, 144
AluBI	AGCT	2 cut(s)	246, 330
AluI	AGCT	2 cut(s)	246, 330
Alw26I	GTCTC	1 cut(s)	69
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	90
AsuHPI	GGTGA	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	317
BciT130I	CCWGG	2 cut(s)	133, 146
BclI	TGATCA	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	2 cut(s)	255, 387
BfmI	CTRYAG	1 cut(s)	48
BisI	GCNGC	1 cut(s)	331
BlpI	GCTNAGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	332
Bme1390I	CCNGG	2 cut(s)	133, 146
BmgBI	CACGTC	1 cut(s)	417
BmgT120I	GGNCC	1 cut(s)	90
BmrFI	CCNGG	2 cut(s)	133, 146
BmrI	ACTGGG	1 cut(s)	207
BmuI	ACTGGG	1 cut(s)	207
BpiI	GAAGAC	1 cut(s)	411
Bpu1102I	GCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse1I	ACTGG	1 cut(s)	213
Bse3DI	GCAATG	1 cut(s)	296
BseBI	CCWGG	2 cut(s)	133, 146
BseDI	CCNNGG	1 cut(s)	391
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMI	GCAATG	1 cut(s)	296
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	317
BseYI	CCCAGC	1 cut(s)	275
BsgI	GTGCAG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	92
Bsp143I	GATC	1 cut(s)	237
Bsp1720I	GCTNAGC	1 cut(s)	123
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	391
Bst2UI	CCWGG	2 cut(s)	133, 146
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstDEI	CTNAG	3 cut(s)	102, 123, 308
BstKTI	GATC	1 cut(s)	240
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	2 cut(s)	133, 146
BstSCI	CCNGG	2 cut(s)	131, 144
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	317
BstV2I	GAAGAC	1 cut(s)	411
BsuRI	GGCC	1 cut(s)	92
BtrI	CACGTC	1 cut(s)	417
BtsIMutI	CAGTG	2 cut(s)	220, 355
Cfr13I	GGNCC	1 cut(s)	90
CviAII	CATG	2 cut(s)	313, 366
CviJI	RGCY	6 cut(s)	38, 92, 122, 246, 330, 390
CviKI_1	RGCY	6 cut(s)	38, 92, 122, 246, 330, 390
DdeI	CTNAG	3 cut(s)	102, 123, 308
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
DrdI	GACNNNNNNGTC	1 cut(s)	159
DseDI	GACNNNNNNGTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	391
Eco32I	GATATC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	331
EcoRII	CCWGG	2 cut(s)	131, 144
EcoRV	GATATC	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	2 cut(s)	316, 369
FaiI	YATR	6 cut(s)	185, 191, 208, 314, 367, 424
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	2 cut(s)	312, 365
FbaI	TGATCA	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	331
Fsp4HI	GCNGC	1 cut(s)	331
FspBI	CTAG	2 cut(s)	255, 387
GluI	GCNGC	1 cut(s)	331
GsaI	CCCAGC	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	92
Hin1II	CATG	2 cut(s)	316, 369
HinfI	GANTC	2 cut(s)	77, 362
HphI	GGTGA	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	2 cut(s)	266, 289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	3 cut(s)	102, 123, 308
HpySE526I	ACGT	1 cut(s)	416
Hsp92II	CATG	2 cut(s)	316, 369
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	1 cut(s)	237
LmnI	GCTCC	2 cut(s)	4, 327
LpnPI	CCDG	6 cut(s)	118, 131, 145, 158, 226, 261
Lsp1109I	GCAGC	1 cut(s)	317
MaeI	CTAG	2 cut(s)	255, 387
MaeII	ACGT	1 cut(s)	416
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	2 cut(s)	337, 411
MluCI	AATT	1 cut(s)	321
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	1 cut(s)	21
MseI	TTAA	5 cut(s)	95, 107, 320, 336, 408
MslI	CAYNNNNRTG	1 cut(s)	230
MspR9I	CCNGG	2 cut(s)	133, 146
MvaI	CCWGG	2 cut(s)	133, 146
MwoI	GCNNNNNNNGC	1 cut(s)	272
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	2 cut(s)	316, 369
PfeI	GAWTC	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	332
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Psp6I	CCWGG	2 cut(s)	131, 144
PspFI	CCCAGC	1 cut(s)	275
PspGI	CCWGG	2 cut(s)	131, 144
PspPI	GGNCC	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	5 cut(s)	95, 107, 320, 336, 408
SatI	GCNGC	1 cut(s)	331
Sau3AI	GATC	1 cut(s)	237
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	2 cut(s)	133, 146
SetI	ASST	7 cut(s)	32, 137, 150, 183, 248, 332, 419
SfcI	CTRYAG	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
Sse9I	AATT	1 cut(s)	321
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	2 cut(s)	255, 387
StyD4I	CCNGG	2 cut(s)	131, 144
StyI	CCWWGG	1 cut(s)	391
TaiI	ACGT	1 cut(s)	419
TasI	AATT	1 cut(s)	321
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	5 cut(s)	95, 107, 320, 336, 408
Tru9I	TTAA	5 cut(s)	95, 107, 320, 336, 408
TscAI	CASTG	2 cut(s)	220, 355
TseI	GCWGC	1 cut(s)	330
TspDTI	ATGAA	2 cut(s)	354, 411
TspRI	CASTG	2 cut(s)	220, 355
XspI	CTAG	2 cut(s)	255, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.