Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030988.1

Orthogroup ID

OG0002648

Physical Location & Seq

Genomic Coordinates Reverse (-)

7539 .. 8205

Gene Structure 667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030988.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atgagtcgcggagcagttgccggagccaagggcaagaagaagggagcttcgttcgtgattgactgcgggaagccggtggaggataagatcatggacatcgcctcactggagaagttcctccaggagcgtatcaaggtcggcggcaaggccggtgctctcggtgactctgttaccgtttctcgtgagaagaacaagatcaccgtcacttctgacaacacattctccaagaggtatctcaagtacttgaccaagaaatacttgaagaagcacaatgttagggattggcttcgtgtgattgcatccaacaaggaccgcaatgtgtatgaattgagatacttcaacattgcagagaatgagggcgaggaagaagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22e

Protein Analysis

124

Amino Acids

14.0

Weight (kDa)

9.57

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05560 AT3G05560 AT3G05560 AT5G27770
fragaria_vesca	FvH4_2g25750 FvH4_7g11630
malus_domestica	MD02G1205500.v1.1 MD03G1288500.v1.1 MD07G1121900.v1.1 MD11G1309600.v1.1
prunus_persica	Prupe.2G144300_v2.0.a1 Prupe.8G261700_v2.0.a1
pyrus_communis	pycom02g16730 pycom07g10430
rosa_chinensis	RchiOBHm_Chr1g0350181 RchiOBHm_Chr6g0294041
rosa_laevigata	RLG00000011904 RLG00000028500
rosa_multiflora	Rmu_co8031908.1_g000001 Rmu_sc0010426.1_g000003 Rmu_sc0030988.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305030 Rroxscaffold_7G00173700
rosa_rugosa	Rorug01G0209000 Rorug01G0209100 Rorug01G0209200 Rorug06G0240500 Rorug06G0240500
rosa_samantha	Rh1AG224900 Rh1BG192800 Rh1CG209700 Rh1DG221200 Rh6AG353400 Rh6BG360300 Rh6CG367500 Rh6DG354200
rosa_wichuraiana	Rw1G013180 Rw1G019230 Rw1G019330 Rw6G030790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	9
AciI	CCGC	4 cut(s)	9, 66, 141, 313
AfaI	GTAC	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	262, 340
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
Alw21I	GWGCWC	1 cut(s)	157
AoxI	GGCC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	2 cut(s)	173, 190
AvaII	GGWCC	1 cut(s)	310
BauI	CACGAG	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	157
BciT130I	CCWGG	1 cut(s)	122
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
BmcAI	AGTACT	1 cut(s)	242
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	308
BpmI	CTGGAG	2 cut(s)	104, 128
BpuEI	CTTGAG	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	27
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bse118I	RCCGGY	2 cut(s)	73, 149
Bse1I	ACTGG	1 cut(s)	111
Bse3DI	GCAATG	2 cut(s)	322, 342
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	299
BseMI	GCAATG	2 cut(s)	322, 342
BseNI	ACTGG	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	157
BsiSI	CCGG	3 cut(s)	21, 74, 150
BsnI	GGCC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	87, 195
BspACI	CCGC	4 cut(s)	9, 66, 141, 313
BspANI	GGCC	1 cut(s)	149
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	25
BsrDI	GCAATG	2 cut(s)	322, 342
BsrFI	RCCGGY	2 cut(s)	73, 149
BsrI	ACTGG	1 cut(s)	111
BssAI	RCCGGY	2 cut(s)	73, 149
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	2 cut(s)	87, 195
BssSI	CACGAG	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	175, 202
BstF5I	GGATG	1 cut(s)	299
BstFNI	CGCG	1 cut(s)	9
BstKTI	GATC	2 cut(s)	90, 198
BstMBI	GATC	2 cut(s)	87, 195
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	120
BstUI	CGCG	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	149
BtgZI	GCGATG	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	299
BtsIMutI	CAGTG	1 cut(s)	104
Cfr10I	RCCGGY	2 cut(s)	73, 149
Cfr13I	GGNCC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	5 cut(s)	26, 47, 73, 149, 286
CviKI_1	RGCY	5 cut(s)	26, 47, 73, 149, 286
CviQI	GTAC	1 cut(s)	241
DpnI	GATC	2 cut(s)	89, 197
DpnII	GATC	2 cut(s)	87, 195
Eco130I	CCWWGG	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	1 cut(s)	94
FaiI	YATR	2 cut(s)	92, 324
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FatI	CATG	1 cut(s)	90
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	142
GluI	GCNGC	1 cut(s)	142
GsuI	CTGGAG	2 cut(s)	104, 128
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	3 cut(s)	21, 74, 150
Hin1II	CATG	1 cut(s)	94
HinfI	GANTC	2 cut(s)	4, 164
HpaII	CCGG	3 cut(s)	21, 74, 150
HphI	GGTGA	2 cut(s)	173, 190
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	2 cut(s)	55, 182
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	2 cut(s)	175, 202
HpyCH4V	TGCA	2 cut(s)	299, 347
Hsp92II	CATG	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	87, 195
LmnI	GCTCC	4 cut(s)	11, 23, 44, 124
LpnPI	CCDG	6 cut(s)	34, 87, 92, 107, 134, 163
LweI	GCATC	1 cut(s)	308
MaeIII	GTNAC	3 cut(s)	161, 169, 202
MalI	GATC	2 cut(s)	89, 197
MboI	GATC	2 cut(s)	87, 195
MboII	GAAGA	3 cut(s)	49, 199, 274
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	1 cut(s)	326
MlyI	GAGTC	2 cut(s)	13, 158
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	6 cut(s)	73, 112, 128, 222, 349, 355
MspI	CCGG	3 cut(s)	21, 74, 150
MspR9I	CCNGG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	9
NdeII	GATC	2 cut(s)	87, 195
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	2 cut(s)	161, 202
PfoI	TCCNGGA	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	143
PleI	GAGTC	2 cut(s)	12, 158
PpsI	GAGTC	2 cut(s)	12, 158
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	1 cut(s)	310
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	2 cut(s)	87, 195
Sau96I	GGNCC	1 cut(s)	310
ScaI	AGTACT	1 cut(s)	242
SchI	GAGTC	2 cut(s)	13, 158
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	3 cut(s)	49, 138, 233
SfaNI	GCATC	1 cut(s)	308
SinI	GGWCC	1 cut(s)	310
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	1 cut(s)	326
SsiI	CCGC	4 cut(s)	9, 66, 141, 313
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	175, 202
TasI	AATT	1 cut(s)	326
TatI	WGTACW	1 cut(s)	240
TauI	GCSGC	1 cut(s)	144
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	2 cut(s)	161, 202
Tsp45I	GTSAC	2 cut(s)	161, 202
TspDTI	ATGAA	1 cut(s)	339
TspRI	CASTG	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	310
ZrmI	AGTACT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.