Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002648

Physical Location & Seq

Genomic Coordinates Reverse (-)

14001462 .. 14002174

Gene Structure 713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g16730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGACATTGCTTCCCTTGAGAAGTTTCTTCAGGAGAGGATCAAGGTTGGAGGCAAGGCTGGTGCACTTGGTGACACCGTCAGTGTGACCCGTGAGAAGAGCAAGATCACTGTCACCTCTGACAGTAACTTCTCAAAGAGGTATCTGAAGTACTTGACAAAGAAGTACCTAAAGAAACACAACGTGCGAGATTGGCTTCGTGTGATTGCTTCCAACAAGGATAGAAATGTCTACGAACTGAGGTACTTCAACATTGCCGAGAACGAAGGGGAGGAAGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22e

Protein Analysis

95

Amino Acids

10.95

Weight (kDa)

9.33

Isoelectric Point (pI)

30.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22e	PF01776	1 - 93	2.5e-38	Ribosomal L22e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05560 AT3G05560 AT3G05560 AT5G27770
fragaria_vesca	FvH4_2g25750 FvH4_7g11630
malus_domestica	MD02G1205500.v1.1 MD03G1288500.v1.1 MD07G1121900.v1.1 MD11G1309600.v1.1
prunus_persica	Prupe.2G144300_v2.0.a1 Prupe.8G261700_v2.0.a1
pyrus_communis	pycom02g16730 pycom07g10430
rosa_chinensis	RchiOBHm_Chr1g0350181 RchiOBHm_Chr6g0294041
rosa_laevigata	RLG00000011904 RLG00000028500
rosa_multiflora	Rmu_co8031908.1_g000001 Rmu_sc0010426.1_g000003 Rmu_sc0030988.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305030 Rroxscaffold_7G00173700
rosa_rugosa	Rorug01G0209000 Rorug01G0209100 Rorug01G0209200 Rorug06G0240500 Rorug06G0240500
rosa_samantha	Rh1AG224900 Rh1BG192800 Rh1CG209700 Rh1DG221200 Rh6AG353400 Rh6BG360300 Rh6CG367500 Rh6DG354200
rosa_wichuraiana	Rw1G013180 Rw1G019230 Rw1G019330 Rw6G030790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	231
AclWI	GGATC	1 cut(s)	47
AcuI	CTGAAG	2 cut(s)	14, 167
AdeI	CACNNNGTG	2 cut(s)	71, 184
AfaI	GTAC	3 cut(s)	152, 167, 245
AgsI	TTSAA	1 cut(s)	250
Alw21I	GWGCWC	1 cut(s)	67
Alw44I	GTGCAC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	47
ApaLI	GTGCAC	1 cut(s)	63
AsuHPI	GGTGA	2 cut(s)	83, 106
BaeGI	GKGCMC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	67
BmcAI	AGTACT	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	38
Bse3DI	GCAATG	2 cut(s)	6, 252
BseMI	GCAATG	2 cut(s)	6, 252
BseMII	CTCAG	1 cut(s)	230
BseSI	GKGCMC	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	2 cut(s)	39, 105
BspCNI	CTCAG	1 cut(s)	231
BspPI	GGATC	1 cut(s)	47
BspQI	GCTCTTC	1 cut(s)	92
BsrDI	GCAATG	2 cut(s)	6, 252
BssMI	GATC	2 cut(s)	39, 105
Bst4CI	ACNGT	3 cut(s)	79, 112, 125
Bst6I	CTCTTC	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	239
BstKTI	GATC	2 cut(s)	42, 108
BstMBI	GATC	2 cut(s)	39, 105
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstSLI	GKGCMC	1 cut(s)	67
BtsIMutI	CAGTG	2 cut(s)	88, 108
Csp6I	GTAC	3 cut(s)	151, 166, 244
CviJI	RGCY	2 cut(s)	59, 196
CviKI_1	RGCY	2 cut(s)	59, 196
CviQI	GTAC	3 cut(s)	151, 166, 244
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	2 cut(s)	41, 107
DpnII	GATC	2 cut(s)	39, 105
DraIII	CACNNNGTG	2 cut(s)	71, 184
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco57I	CTGAAG	2 cut(s)	14, 167
FblI	GTMKAC	1 cut(s)	231
HphI	GGTGA	2 cut(s)	83, 106
Hpy166II	GTNNAC	2 cut(s)	65, 232
Hpy188I	TCNGA	2 cut(s)	121, 147
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	2 cut(s)	65, 232
HpyAV	CCTTC	1 cut(s)	260
HpyCH4III	ACNGT	3 cut(s)	79, 112, 125
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	183
Kzo9I	GATC	2 cut(s)	39, 105
LguI	GCTCTTC	1 cut(s)	92
LpnPI	CCDG	2 cut(s)	17, 45
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	4 cut(s)	71, 85, 112, 125
MalI	GATC	2 cut(s)	41, 107
MboI	GATC	2 cut(s)	39, 105
MboII	GAAGA	2 cut(s)	20, 109
MhlI	GDGCHC	1 cut(s)	67
MmeI	TCCRAC	2 cut(s)	28, 237
MnlI	CCTC	6 cut(s)	30, 44, 127, 132, 234, 265
MwoI	GCNNNNNNNGC	1 cut(s)	193
NdeII	GATC	2 cut(s)	39, 105
NmeAIII	GCCGAG	1 cut(s)	283
NmuCI	GTSAC	3 cut(s)	71, 85, 112
PciSI	GCTCTTC	1 cut(s)	92
PflFI	GACNNNGTC	1 cut(s)	77
PsyI	GACNNNGTC	1 cut(s)	77
RsaI	GTAC	3 cut(s)	152, 167, 245
RsaNI	GTAC	3 cut(s)	151, 166, 244
SapI	GCTCTTC	1 cut(s)	92
Sau3AI	GATC	2 cut(s)	39, 105
ScaI	AGTACT	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	6 cut(s)	48, 119, 143, 171, 186, 245
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
TaaI	ACNGT	3 cut(s)	79, 112, 125
TaiI	ACGT	1 cut(s)	186
TatI	WGTACW	1 cut(s)	150
TscAI	CASTG	2 cut(s)	88, 115
TseFI	GTSAC	3 cut(s)	71, 85, 112
Tsp45I	GTSAC	3 cut(s)	71, 85, 112
TspRI	CASTG	2 cut(s)	88, 115
Tth111I	GACNNNGTC	1 cut(s)	77
VneI	GTGCAC	1 cut(s)	63
XmiI	GTMKAC	1 cut(s)	231
ZrmI	AGTACT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.