Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002648

Physical Location & Seq

Genomic Coordinates Reverse (-)

13652955 .. 13654260

Gene Structure 1306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011904

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAGGGGAAGAGCATCCGATATAAGGAGACGGACGCAGCCGAAGCTCTCTAGCCATATCACATCTTCAAGAACCAAAGAAGCGAAAATGAGTCGCGGAGCGGTTGCCGGAGCCAAGGGCAAGAAGAAGGGAGCTTCGTTCGTGATTGACTGCGGGAAGCCGGTGGAGGATAAGATCATGGACATCGCCTCACTGGAGAAGTTCCTCCAAGAGCGTATCAAGGTCGGCGGCAAGGCCGGAGCTCTCGGTGACTCTGTTACCGTTTCTCGTGAGAAGAACAAGATCACCGTCACTTCTGACAACACATTCTCCAAGAGGTATCTCAAGTACTTGACCAAGAAATACTTGAAGAAGCACAATGTGAGGGATTGGCTTCGTGTGATTGCATCCAACAAGGACCGCAATGTGTATGAGTTGAGATACTTCAACATTGCAGAGAACGAGGGCGAGGAAGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22e

Protein Analysis

154

Amino Acids

17.34

Weight (kDa)

10.0

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22e	PF01776	43 - 152	1.3e-46	Ribosomal L22e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05560 AT3G05560 AT3G05560 AT5G27770
fragaria_vesca	FvH4_2g25750 FvH4_7g11630
malus_domestica	MD02G1205500.v1.1 MD03G1288500.v1.1 MD07G1121900.v1.1 MD11G1309600.v1.1
prunus_persica	Prupe.2G144300_v2.0.a1 Prupe.8G261700_v2.0.a1
pyrus_communis	pycom02g16730 pycom07g10430
rosa_chinensis	RchiOBHm_Chr1g0350181 RchiOBHm_Chr6g0294041
rosa_laevigata	RLG00000011904 RLG00000028500
rosa_multiflora	Rmu_co8031908.1_g000001 Rmu_sc0010426.1_g000003 Rmu_sc0030988.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305030 Rroxscaffold_7G00173700
rosa_rugosa	Rorug01G0209000 Rorug01G0209100 Rorug01G0209200 Rorug06G0240500 Rorug06G0240500
rosa_samantha	Rh1AG224900 Rh1BG192800 Rh1CG209700 Rh1DG221200 Rh6AG353400 Rh6BG360300 Rh6CG367500 Rh6DG354200
rosa_wichuraiana	Rw1G013180 Rw1G019230 Rw1G019330 Rw6G030790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	101
AccII	CGCG	1 cut(s)	96
AciI	CCGC	5 cut(s)	96, 101, 153, 228, 400
AdeI	CACNNNGTG	1 cut(s)	361
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	3 cut(s)	69, 349, 427
AluBI	AGCT	3 cut(s)	46, 134, 242
AluI	AGCT	3 cut(s)	46, 134, 242
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	1 cut(s)	22
AoxI	GGCC	1 cut(s)	234
ApeKI	GCWGC	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	397
AsuHPI	GGTGA	2 cut(s)	260, 277
AvaII	GGWCC	1 cut(s)	397
BanII	GRGCYC	1 cut(s)	244
BauI	CACGAG	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	1 cut(s)	51
BisI	GCNGC	2 cut(s)	38, 229
BlsI	GCNGC	2 cut(s)	39, 230
BmcAI	AGTACT	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	1 cut(s)	112
BmsI	GCATC	2 cut(s)	23, 395
BpmI	CTGGAG	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse118I	RCCGGY	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	198
Bse3DI	GCAATG	2 cut(s)	409, 429
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	2 cut(s)	14, 386
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMI	GCAATG	2 cut(s)	409, 429
BseNI	ACTGG	1 cut(s)	198
BseXI	GCAGC	1 cut(s)	49
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	244
BsiSI	CCGG	3 cut(s)	108, 161, 237
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	22
BsmBI	CGTCTC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	2 cut(s)	174, 282
BspACI	CCGC	5 cut(s)	96, 101, 153, 228, 400
BspANI	GGCC	1 cut(s)	236
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	112
BspQI	GCTCTTC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	101
BsrDI	GCAATG	2 cut(s)	409, 429
BsrFI	RCCGGY	1 cut(s)	160
BsrI	ACTGG	1 cut(s)	198
BssAI	RCCGGY	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	2 cut(s)	174, 282
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	114
Bst2BI	CACGAG	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	262, 289
Bst6I	CTCTTC	1 cut(s)	4
BstF5I	GGATG	2 cut(s)	14, 386
BstFNI	CGCG	1 cut(s)	96
BstKTI	GATC	2 cut(s)	177, 285
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	2 cut(s)	174, 282
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	236
BtgZI	GCGATG	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	14, 386
BtsIMutI	CAGTG	1 cut(s)	191
Cfr10I	RCCGGY	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	397
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	9 cut(s)	40, 46, 54, 113, 134, 160, 236, 242, 373
CviKI_1	RGCY	9 cut(s)	40, 46, 54, 113, 134, 160, 236, 242, 373
CviQI	GTAC	1 cut(s)	328
DpnI	GATC	2 cut(s)	176, 284
DpnII	GATC	2 cut(s)	174, 282
DraIII	CACNNNGTG	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	4
EarI	CTCTTC	1 cut(s)	4
Ecl136II	GAGCTC	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	397
Eco53kI	GAGCTC	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	1 cut(s)	181
FaiI	YATR	4 cut(s)	23, 57, 179, 411
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FatI	CATG	1 cut(s)	177
FauI	CCCGC	1 cut(s)	146
Fnu4HI	GCNGC	2 cut(s)	38, 229
FokI	GGATG	1 cut(s)	373
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	2 cut(s)	38, 229
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	2 cut(s)	38, 229
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	236
HapII	CCGG	3 cut(s)	108, 161, 237
HgaI	GACGC	1 cut(s)	43
Hin1II	CATG	1 cut(s)	181
HinfI	GANTC	2 cut(s)	91, 251
HpaII	CCGG	3 cut(s)	108, 161, 237
HphI	GGTGA	2 cut(s)	260, 277
Hpy188I	TCNGA	2 cut(s)	19, 298
Hpy188III	TCNNGA	3 cut(s)	69, 142, 269
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	2 cut(s)	262, 289
HpyCH4V	TGCA	2 cut(s)	386, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
Hsp92II	CATG	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	174, 282
LguI	GCTCTTC	1 cut(s)	4
LmnI	GCTCC	4 cut(s)	98, 110, 131, 239
LpnPI	CCDG	4 cut(s)	121, 174, 179, 250
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	2 cut(s)	23, 395
MaeI	CTAG	1 cut(s)	51
MaeIII	GTNAC	3 cut(s)	248, 256, 289
MalI	GATC	2 cut(s)	176, 284
MbiI	CCGCTC	1 cut(s)	101
MboI	GATC	2 cut(s)	174, 282
MboII	GAAGA	5 cut(s)	21, 57, 136, 286, 361
MhlI	GDGCHC	1 cut(s)	244
MlyI	GAGTC	2 cut(s)	100, 245
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	7 cut(s)	160, 199, 215, 309, 357, 436, 442
MspI	CCGG	3 cut(s)	108, 161, 237
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	43
NdeII	GATC	2 cut(s)	174, 282
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	1 cut(s)	112
NmuCI	GTSAC	2 cut(s)	248, 289
PciSI	GCTCTTC	1 cut(s)	4
PkrI	GCNGC	2 cut(s)	39, 230
PleI	GAGTC	2 cut(s)	99, 245
PpsI	GAGTC	2 cut(s)	99, 245
Psp124BI	GAGCTC	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	1 cut(s)	397
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SacI	GAGCTC	1 cut(s)	244
SapI	GCTCTTC	1 cut(s)	4
SatI	GCNGC	2 cut(s)	38, 229
Sau3AI	GATC	2 cut(s)	174, 282
Sau96I	GGNCC	1 cut(s)	397
ScaI	AGTACT	1 cut(s)	329
SchI	GAGTC	2 cut(s)	100, 245
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	5 cut(s)	48, 136, 225, 244, 320
SfaNI	GCATC	2 cut(s)	23, 395
SinI	GGWCC	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SsiI	CCGC	5 cut(s)	96, 101, 153, 228, 400
SspMI	CTAG	1 cut(s)	51
SstI	GAGCTC	1 cut(s)	244
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	262, 289
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	1 cut(s)	231
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	2 cut(s)	248, 289
TseI	GCWGC	1 cut(s)	37
Tsp45I	GTSAC	2 cut(s)	248, 289
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	1 cut(s)	198
VpaK11BI	GGWCC	1 cut(s)	397
XspI	CTAG	1 cut(s)	51
ZrmI	AGTACT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.