AT3G06190

BTB-POZ and MATH domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
1874169 .. 1876946
2778 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06190.3

Sequence Viewer

Length: 1221 bp
ATGGACACAATTAGGGTTTCCAAGGAGGTTCCTGGATCTTCGAAATCGACCGCACAGTCGCTCACGGAGTCGACCTCTCGCACGGAAACCATCAATGGCTCCCACGAATTCAAGATCAGCGGCTACTCTTTGGTCAAAGGCATGGGGATTGGCAAATACGTTGCCTCGGATACTTTCATGGTCGGTGGATACTCCTGGGCCATCTACTTCTACCCAGATGGAAAGAGTCCAGAGGATAATTCTGTCTACGTGTCTCTCTTCATAGCCCTTGCGAGTGAAGGAGCCGATGTTAGGGCTTTGTTTGAGCTTACCCTCGTGGATCAGAGCGGTAACGAAAGGCACAAAGTTCATAGCCATTTTGGTAGAACTCTCGAAAGCGGACCCTATACTCTTAAATATCGAGGGAGTATGTGGGGATACAAACGATTTTTCAAGAGGTCTCTTTTGGAGTCATCGGACTATCTGAAGGACAATGGTCTCTTGGTCCGGTGTTGTGTTGGAGTGGTGAAGTCACGCACAGAAGGACCGAGGTGTTACAATATCCCGGTGCCGGTTTCTGGCTTGGGTCAGCAGTTTGGAAAGCTTTTGGAAAGTGGGAAAGGAGCTGACGTTACTTTCGAAGTTGATGGAGAAACATTTCCTGCTCACAAATTGGTTCTTGCAGCACGTTCTGCAGTTTTCAGGGCACAGCTTTTTGGCCCGTTGAGAAGTGAAAATACCAATTGTATAATCATAGAAGACGTACAAGCCCCTATTTTCAAGATGTTGCTTCATTTTATCTACTGGGATGAAATGCCTGATATGCAAGACTTAATCGGCACAGACTTGAAATGGGCATCAACTCTTGTGGCTCAGCATCTGCTTGCAGCTGCAGACCGTTATGCTCTTGAGCGGCTTAGAACAATATGCGAGTCAAAACTCTGTGAAGGAATCAGCATAAATACGGTAGCAACCACCTTGGCTCTTGCAGAGCAGCATCATTGTTTCCAGCTGAAAGCCGCCTGCCTCAAATTTATAGCTTTGCCAGAAAACCTGAAAGCTGTGATGGAAACGGATGGGTTTGATTATCTGAAGGAAAGCTGCCCGTCCCTACTAAGTGAGCTATTGGAGTATGTGGCTAGGCTGAGTGAGCACTCTTTAACATCATCAGGGCATCGAAAGGAGTTATTTGCTGATGGTTGTGACTTAAATGGGAGACGTGTGAAGCAACGGTTACATTAG

Protein Analysis

406

Amino Acids

45.16

Weight (kDa)

6.64

Isoelectric Point (pI)

32.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 34 - 166 1.6e-29 MATH domain
BTB PF00651 192 - 257 1.8e-12 BTB/POZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 55
AccB1I GGYRCC 1 cut(s) 547
AccBSI CCGCTC 2 cut(s) 327, 892
AccI GTMKAC 2 cut(s) 71, 246
AciI CCGC 6 cut(s) 51, 120, 327, 378, 892, 999
AclWI GGATC 2 cut(s) 43, 327
AcsI RAATTY 2 cut(s) 107, 1010
AcuI CTGAAG 2 cut(s) 485, 1091
AfaI GTAC 1 cut(s) 744
AfiI CCNNNNNNNGG 3 cut(s) 291, 550, 557
AflIII ACRYGT 2 cut(s) 249, 1198
AgsI TTSAA 4 cut(s) 112, 433, 760, 829
AjiI CACGTC 1 cut(s) 1199
AjnI CCWGG 2 cut(s) 31, 194
Alw21I GWGCWC 1 cut(s) 1134
Alw26I GTCTC 4 cut(s) 258, 444, 482, 1189
AlwI GGATC 2 cut(s) 43, 327
AlwNI CAGNNNCTG 1 cut(s) 859
AoxI GGCC 2 cut(s) 198, 697
ApeKI GCWGC 5 cut(s) 662, 866, 869, 973, 1080
ApoI RAATTY 2 cut(s) 107, 1010
ArsI GACNNNNNNTTYG 2 cut(s) 599, 631
Asp700I GAANNNNTTC 1 cut(s) 636
AspS9I GGNCC 5 cut(s) 198, 380, 484, 524, 698
AsuC2I CCSGG 1 cut(s) 545
AsuHPI GGTGA 1 cut(s) 517
AsuII TTCGAA 2 cut(s) 41, 618
AvaII GGWCC 3 cut(s) 380, 484, 524
BaeGI GKGCMC 1 cut(s) 688
BanI GGYRCC 1 cut(s) 547
BarI GAAGNNNNNNTAC 2 cut(s) 700, 732
BauI CACGAG 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 744
Bbv12I GWGCWC 1 cut(s) 1134
BbvI GCAGC 5 cut(s) 674, 856, 878, 985, 1067
BccI CCATC 7 cut(s) 98, 209, 212, 620, 1039, 1049, 1169
BciT130I CCWGG 2 cut(s) 33, 196
BciVI GTATCC 3 cut(s) 163, 182, 410
BcnI CCSGG 1 cut(s) 545
BcoDI GTCTC 4 cut(s) 258, 444, 482, 1189
BfaI CTAG 1 cut(s) 1119
BfmI CTRYAG 2 cut(s) 672, 870
BfuI GTATCC 3 cut(s) 163, 182, 410
BisI GCNGC 8 cut(s) 121, 663, 867, 870, 893, 974, 999, 1081
BlpI GCTNAGC 1 cut(s) 852
BlsI GCNGC 8 cut(s) 122, 664, 868, 871, 894, 975, 1000, 1082
Bme1390I CCNGG 3 cut(s) 33, 196, 545
Bme18I GGWCC 3 cut(s) 380, 484, 524
BmgBI CACGTC 1 cut(s) 1199
BmgT120I GGNCC 5 cut(s) 198, 380, 484, 524, 698
BmiI GGNNCC 5 cut(s) 30, 100, 283, 382, 549
BmrFI CCNGG 3 cut(s) 33, 196, 545
BmrI ACTGGG 1 cut(s) 793
BmsI GCATC 4 cut(s) 845, 865, 985, 1162
BmuI ACTGGG 1 cut(s) 793
BoxI GACNNNNGTC 1 cut(s) 474
BpiI GAAGAC 1 cut(s) 744
BplI GAGNNNNNCTC 2 cut(s) 59, 91
Bpu1102I GCTNAGC 1 cut(s) 852
Bpu14I TTCGAA 2 cut(s) 41, 618
BpuEI CTTGAG 1 cut(s) 908
BpuMI CCSGG 1 cut(s) 545
BsaAI YACGTR 1 cut(s) 250
BsaI GGTCTC 2 cut(s) 444, 482
BsaJI CCNNGG 5 cut(s) 21, 165, 195, 527, 957
BsaWI WCCGGW 1 cut(s) 486
BsaXI ACNNNNNCTCC 4 cut(s) 273, 303, 594, 624
Bsc4I CCNNNNNNNGG 3 cut(s) 291, 550, 557
Bse118I RCCGGY 1 cut(s) 550
Bse1I ACTGG 1 cut(s) 788
BseBI CCWGG 2 cut(s) 33, 196
BseDI CCNNGG 5 cut(s) 21, 165, 195, 527, 957
BseGI GGATG 2 cut(s) 793, 1060
BseLI CCNNNNNNNGG 3 cut(s) 291, 550, 557
BseMII CTCAG 2 cut(s) 866, 1115
BseNI ACTGG 1 cut(s) 788
BseSI GKGCMC 1 cut(s) 688
BseXI GCAGC 5 cut(s) 674, 856, 878, 985, 1067
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 2 cut(s) 200, 699
BshNI GGYRCC 1 cut(s) 547
BsiEI CGRYCG 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 1134
BsiSI CCGG 3 cut(s) 487, 545, 551
BslFI GGGAC 1 cut(s) 1072
BslI CCNNNNNNNGG 3 cut(s) 291, 550, 557
BsmAI GTCTC 4 cut(s) 258, 444, 482, 1189
BsmBI CGTCTC 1 cut(s) 1189
BsmFI GGGAC 1 cut(s) 1072
BsnI GGCC 2 cut(s) 200, 699
Bso31I GGTCTC 2 cut(s) 444, 482
Bsp119I TTCGAA 2 cut(s) 41, 618
Bsp1286I GDGCHC 2 cut(s) 688, 1134
Bsp143I GATC 3 cut(s) 35, 114, 319
Bsp1720I GCTNAGC 1 cut(s) 852
BspACI CCGC 6 cut(s) 51, 120, 327, 378, 892, 999
BspANI GGCC 2 cut(s) 200, 699
BspCNI CTCAG 2 cut(s) 865, 1116
BspLI GGNNCC 5 cut(s) 30, 100, 283, 382, 549
BspMAI CTGCAG 2 cut(s) 676, 874
BspPI GGATC 2 cut(s) 43, 327
BspT104I TTCGAA 2 cut(s) 41, 618
BspT107I GGYRCC 1 cut(s) 547
BspTNI GGTCTC 2 cut(s) 444, 482
BsrBI CCGCTC 2 cut(s) 327, 892
BsrFI RCCGGY 1 cut(s) 550
BsrI ACTGG 1 cut(s) 788
BssAI RCCGGY 1 cut(s) 550
BssECI CCNNGG 5 cut(s) 21, 165, 195, 527, 957
BssMI GATC 3 cut(s) 35, 114, 319
BssSI CACGAG 1 cut(s) 314
BssT1I CCWWGG 2 cut(s) 21, 957
Bst2BI CACGAG 1 cut(s) 314
Bst2UI CCWGG 2 cut(s) 33, 196
Bst4CI ACNGT 4 cut(s) 57, 878, 946, 1212
Bst6I CTCTTC 1 cut(s) 263
BstAPI GCANNNNNTGC 1 cut(s) 671
BstBAI YACGTR 1 cut(s) 250
BstBI TTCGAA 2 cut(s) 41, 618
BstC8I GCNNGC 2 cut(s) 864, 1003
BstDEI CTNAG 4 cut(s) 852, 896, 1094, 1124
BstF5I GGATG 2 cut(s) 793, 1060
BstKTI GATC 3 cut(s) 38, 117, 322
BstMAI GTCTC 4 cut(s) 258, 444, 482, 1189
BstMBI GATC 3 cut(s) 35, 114, 319
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 3 cut(s) 671, 802, 1129
BstNI CCWGG 2 cut(s) 33, 196
BstPAI GACNNNNGTC 1 cut(s) 474
BstSCI CCNGG 3 cut(s) 31, 194, 543
BstSFI CTRYAG 2 cut(s) 672, 870
BstSLI GKGCMC 1 cut(s) 688
BstV1I GCAGC 5 cut(s) 674, 856, 878, 985, 1067
BstV2I GAAGAC 1 cut(s) 744
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
BsuI GTATCC 3 cut(s) 163, 182, 410
BsuRI GGCC 2 cut(s) 200, 699
BtrI CACGTC 1 cut(s) 1199
BtsCI GGATG 2 cut(s) 793, 1060
Cac8I GCNNGC 2 cut(s) 864, 1003
CaiI CAGNNNCTG 1 cut(s) 859
Cfr10I RCCGGY 1 cut(s) 550
Cfr13I GGNCC 5 cut(s) 198, 380, 484, 524, 698
Csp6I GTAC 1 cut(s) 743
CspCI CAANNNNNGTGG 2 cut(s) 828, 863
CviAII CATG 2 cut(s) 142, 178
CviQI GTAC 1 cut(s) 743
DdeI CTNAG 4 cut(s) 852, 896, 1094, 1124
DpnI GATC 3 cut(s) 37, 116, 321
DpnII GATC 3 cut(s) 35, 114, 319
DrdI GACNNNNNNGTC 1 cut(s) 55
DseDI GACNNNNNNGTC 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Eco130I CCWWGG 2 cut(s) 21, 957
Eco31I GGTCTC 2 cut(s) 444, 482
Eco47I GGWCC 3 cut(s) 380, 484, 524
Eco57I CTGAAG 2 cut(s) 485, 1091
EcoRI GAATTC 1 cut(s) 107
EcoRII CCWGG 2 cut(s) 31, 194
EcoT14I CCWWGG 2 cut(s) 21, 957
ErhI CCWWGG 2 cut(s) 21, 957
Esp3I CGTCTC 1 cut(s) 1189
FaeI CATG 2 cut(s) 145, 181
FaqI GGGAC 1 cut(s) 1072
FatI CATG 2 cut(s) 141, 177
FblI GTMKAC 2 cut(s) 71, 246
Fnu4HI GCNGC 8 cut(s) 121, 663, 867, 870, 893, 974, 999, 1081
FokI GGATG 2 cut(s) 800, 1067
Fsp4HI GCNGC 8 cut(s) 121, 663, 867, 870, 893, 974, 999, 1081
FspBI CTAG 1 cut(s) 1119
GluI GCNGC 8 cut(s) 121, 663, 867, 870, 893, 974, 999, 1081
HaeIII GGCC 2 cut(s) 200, 699
HapII CCGG 3 cut(s) 487, 545, 551
Hin1II CATG 2 cut(s) 145, 181
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 5 cut(s) 68, 226, 449, 911, 930
HpaII CCGG 3 cut(s) 487, 545, 551
HphI GGTGA 1 cut(s) 517
Hpy166II GTNNAC 2 cut(s) 72, 247
Hpy188I TCNGA 5 cut(s) 169, 324, 457, 465, 1071
Hpy188III TCNNGA 6 cut(s) 112, 230, 371, 433, 760, 887
Hpy8I GTNNAC 2 cut(s) 72, 247
HpyAV CCTTC 5 cut(s) 272, 460, 515, 920, 1066
HpyCH4III ACNGT 4 cut(s) 57, 878, 946, 1212
HpyCH4IV ACGT 6 cut(s) 159, 249, 609, 667, 741, 1198
HpyCH4V TGCA 6 cut(s) 662, 674, 805, 866, 872, 968
HpyF10VI GCNNNNNNNGC 3 cut(s) 671, 802, 1129
HpyF3I CTNAG 4 cut(s) 852, 896, 1094, 1124
HpySE526I ACGT 6 cut(s) 159, 249, 609, 667, 741, 1198
Hsp92II CATG 2 cut(s) 145, 181
Kzo9I GATC 3 cut(s) 35, 114, 319
LmnI GCTCC 3 cut(s) 104, 281, 602
Lsp1109I GCAGC 5 cut(s) 674, 856, 878, 985, 1067
LweI GCATC 4 cut(s) 845, 865, 985, 1162
MaeI CTAG 1 cut(s) 1119
MaeII ACGT 6 cut(s) 159, 249, 609, 667, 741, 1198
MaeIII GTNAC 6 cut(s) 329, 510, 533, 610, 1181, 1212
MalI GATC 3 cut(s) 37, 116, 321
MbiI CCGCTC 2 cut(s) 327, 892
MboI GATC 3 cut(s) 35, 114, 319
MboII GAAGA 3 cut(s) 30, 250, 749
MfeI CAATTG 1 cut(s) 721
MflI RGATCY 1 cut(s) 35
MhlI GDGCHC 2 cut(s) 688, 1134
MluCI AATT 6 cut(s) 9, 107, 238, 650, 721, 1010
MlyI GAGTC 4 cut(s) 77, 235, 458, 920
MmeI TCCRAC 1 cut(s) 478
MnlI CCTC 9 cut(s) 19, 85, 175, 226, 323, 395, 429, 522, 1016
MroXI GAANNNNTTC 1 cut(s) 636
MseI TTAA 4 cut(s) 393, 812, 1139, 1187
MspA1I CMGCKG 3 cut(s) 120, 869, 991
MspI CCGG 3 cut(s) 487, 545, 551
MspR9I CCNGG 3 cut(s) 33, 196, 545
MunI CAATTG 1 cut(s) 721
MvaI CCWGG 2 cut(s) 33, 196
MwoI GCNNNNNNNGC 3 cut(s) 671, 802, 1129
NciI CCSGG 1 cut(s) 545
NdeII GATC 3 cut(s) 35, 114, 319
NlaIII CATG 2 cut(s) 145, 181
NlaIV GGNNCC 5 cut(s) 30, 100, 283, 382, 549
NmuCI GTSAC 2 cut(s) 510, 1181
NspV TTCGAA 2 cut(s) 41, 618
PcsI WCGNNNNNNNCGW 1 cut(s) 615
PdmI GAANNNNTTC 1 cut(s) 636
PfeI GAWTC 1 cut(s) 930
PfoI TCCNGGA 1 cut(s) 31
PkrI GCNGC 8 cut(s) 122, 664, 868, 871, 894, 975, 1000, 1082
PleI GAGTC 4 cut(s) 76, 234, 457, 919
PpsI GAGTC 4 cut(s) 76, 234, 457, 919
Ppu21I YACGTR 1 cut(s) 250
PshAI GACNNNNGTC 1 cut(s) 474
Psp6I CCWGG 2 cut(s) 31, 194
PspGI CCWGG 2 cut(s) 31, 194
PspN4I GGNNCC 5 cut(s) 30, 100, 283, 382, 549
PspPI GGNCC 5 cut(s) 198, 380, 484, 524, 698
PstI CTGCAG 2 cut(s) 676, 874
PstNI CAGNNNCTG 1 cut(s) 859
PsuI RGATCY 1 cut(s) 35
PvuII CAGCTG 2 cut(s) 869, 991
RsaI GTAC 1 cut(s) 744
RsaNI GTAC 1 cut(s) 743
SalI GTCGAC 1 cut(s) 70
SaqAI TTAA 4 cut(s) 393, 812, 1139, 1187
SatI GCNGC 8 cut(s) 121, 663, 867, 870, 893, 974, 999, 1081
Sau3AI GATC 3 cut(s) 35, 114, 319
Sau96I GGNCC 5 cut(s) 198, 380, 484, 524, 698
SchI GAGTC 4 cut(s) 77, 235, 458, 920
ScrFI CCNGG 3 cut(s) 33, 196, 545
SduI GDGCHC 2 cut(s) 688, 1134
SfaNI GCATC 4 cut(s) 845, 865, 985, 1162
SfcI CTRYAG 2 cut(s) 672, 870
SfuI TTCGAA 2 cut(s) 41, 618
SinI GGWCC 3 cut(s) 380, 484, 524
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
Sse9I AATT 6 cut(s) 9, 107, 238, 650, 721, 1010
SsiI CCGC 6 cut(s) 51, 120, 327, 378, 892, 999
SspMI CTAG 1 cut(s) 1119
StyD4I CCNGG 3 cut(s) 31, 194, 543
StyI CCWWGG 2 cut(s) 21, 957
TaaI ACNGT 4 cut(s) 57, 878, 946, 1212
TaiI ACGT 6 cut(s) 162, 252, 612, 670, 744, 1201
TaqI TCGA 7 cut(s) 41, 47, 71, 372, 400, 618, 1156
TaqII GACCGA 1 cut(s) 541
TasI AATT 6 cut(s) 9, 107, 238, 650, 721, 1010
TauI GCSGC 3 cut(s) 123, 895, 1001
TfiI GAWTC 1 cut(s) 930
Tru1I TTAA 4 cut(s) 393, 812, 1139, 1187
Tru9I TTAA 4 cut(s) 393, 812, 1139, 1187
TseFI GTSAC 2 cut(s) 510, 1181
TseI GCWGC 5 cut(s) 662, 866, 869, 973, 1080
Tsp45I GTSAC 2 cut(s) 510, 1181
TspDTI ATGAA 5 cut(s) 166, 250, 338, 761, 804
TspGWI ACGGA 3 cut(s) 80, 98, 1067
VpaK11BI GGWCC 3 cut(s) 380, 484, 524
XapI RAATTY 2 cut(s) 107, 1010
XmiI GTMKAC 2 cut(s) 71, 246
XmnI GAANNNNTTC 1 cut(s) 636
XspI CTAG 1 cut(s) 1119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.