pycom16g15250

BTB POZ and MATH domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
11206360 .. 11209992
3633 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g15250.3

Sequence Viewer

Length: 1233 bp
ATGGACAGAATCAGGGTCCCAAATGAAGCATTAAAGCCCAGCTCTTCCCCGCCGCCGCCGGCTCCGCTGGTCACGTGCTCGACGTCGTGCACGGAGACCGTAAATGGGTGCCACGAGTTTAAGATCAGTGGGTACTCGCTCGCCAAGGGCATGGGAATCGGCAAATACGTCGCCTCCGATTCGTTTGTGGTCGGTGGTTATACATGGGCTATATATTTCTACCCGGATGGCAAGAGCGTCGAGGACAATGCCGGGTACGTGTCGGTGTTCATAGCTCTGGCGAGCGAGGGCACCGATGTCAGGGCTCTGTTCGAATTGACGCTTTTGGATCAGAGCGAGAGGCAGCGGCACAAGGTGCATAGCCATTTTCTGAGGATGCTTGATGGCGGTCCTTATACGCTTAAATACCGGGGAAGCATGTGGGGTTATAAACGCTTTTACAAAAGAAGTCTTTTAGAGGCATCAGACTACCTTAAAGATGATTGTCTTATAATAAAATGTCGTGTTGGTGTTGTTAAGACGAATACAGAAGGACCTAAAACGTACAATATAGCTCAACCACCTTCCAATATCGGCCAACATTTTGGTAAGCTTTTAGAAAGTGGAAAGTTGACTGATGTAAGTTTCAAAGTTGACGAAGAAGTATTTGCTGCCCACAAAGTGGTGCTCGCCGCACGCTCGCGTGTGTTCAAGGCACAACTTTTTGGTCCATTAAAAGATAAGAACACTGATTCCATAATAGTTGAAGACATTGAAGCTCCCGTATTTAAGGCATTACTCCACTTCATCTACTGGGATTCTCTACCAGACATGCAAGAGCTTGTTGGGCCGCTAAATTCAAATTGGGTGTCTACAATGATGGCCCAACATCTGCTGGCAGCAGCTGATCGCTATGCCCTCGAGAGGCTCAAACTGATGTGTGAGGCTAAACTTTGCGAAAATGTTGCCATAAATAATGTTGCAACAACGTTAGCCTTGGCAGAGCAACACCAATGTGAACAACTTAGAGCTGTATGCCTCAAATTTATTGCAGTGCCTGAAAATTTAAGAGCTGTGATTGAAACTGATGGATTCAAGTACTTGAGGGAAAGCTGCCCTTCTGTCATCACTGAGCTACTGCGTTACGTTGCAAGTATTGGTGAGCATTCTTTTGTTACTTCTGGGTACGGGAAGGGGAACTTATCAGACGGCACTGATGGGAACGGAAGGCGGGTTAAGGCAAGGTTGTATTGA

Protein Analysis

411

Amino Acids

45.56

Weight (kDa)

7.95

Isoelectric Point (pI)

32.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 429, 491
AatII GACGTC 1 cut(s) 86
AccB1I GGYRCC 2 cut(s) 108, 290
AccB7I CCANNNNNTGG 1 cut(s) 661
AccI GTMKAC 1 cut(s) 851
AccII CGCG 1 cut(s) 682
AciI CCGC 9 cut(s) 50, 53, 56, 65, 346, 387, 672, 830, 1210
AclI AACGTT 1 cut(s) 968
AclWI GGATC 1 cut(s) 336
AcoI YGGCCR 1 cut(s) 574
AcsI RAATTY 3 cut(s) 835, 1022, 1042
AcvI CACGTG 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 83
AdeI CACNNNGTG 2 cut(s) 355, 661
AfaI GTAC 5 cut(s) 134, 257, 545, 1079, 1166
AfiI CCNNNNNNNGG 4 cut(s) 105, 300, 661, 903
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 7 cut(s) 628, 691, 746, 755, 840, 1061, 1075
AleI CACNNNNGTG 1 cut(s) 993
AloI GAACNNNNNNTCC 2 cut(s) 716, 748
Alw21I GWGCWC 3 cut(s) 80, 92, 669
Alw26I GTCTC 1 cut(s) 89
Alw44I GTGCAC 1 cut(s) 88
AlwI GGATC 1 cut(s) 336
AlwNI CAGNNNCTG 2 cut(s) 884, 1037
Ama87I CYCGRG 1 cut(s) 899
AoxI GGCC 3 cut(s) 574, 827, 861
ApaLI GTGCAC 1 cut(s) 88
ApeKI GCWGC 5 cut(s) 343, 650, 878, 881, 1092
ApoI RAATTY 3 cut(s) 835, 1022, 1042
ArsI GACNNNNNNTTYG 2 cut(s) 833, 865
AspS9I GGNCC 6 cut(s) 16, 389, 533, 707, 827, 862
AsuC2I CCSGG 3 cut(s) 224, 253, 410
AsuHPI GGTGA 1 cut(s) 1151
AsuII TTCGAA 1 cut(s) 312
AvaI CYCGRG 1 cut(s) 899
AvaII GGWCC 4 cut(s) 16, 389, 533, 707
BaeGI GKGCMC 2 cut(s) 92, 293
BanI GGYRCC 2 cut(s) 108, 290
BanII GRGCYC 1 cut(s) 307
BauI CACGAG 1 cut(s) 113
BbrPI CACGTG 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 753
Bbv12I GWGCWC 3 cut(s) 80, 92, 669
BbvI GCAGC 5 cut(s) 355, 637, 890, 893, 1079
BccI CCATC 5 cut(s) 221, 377, 853, 1061, 1190
BceAI ACGGC 1 cut(s) 1204
BcnI CCSGG 3 cut(s) 224, 253, 410
BcoDI GTCTC 1 cut(s) 89
BmcAI AGTACT 1 cut(s) 1079
Bme1390I CCNGG 3 cut(s) 224, 253, 410
Bme18I GGWCC 4 cut(s) 16, 389, 533, 707
BmeT110I CYCGRG 1 cut(s) 899
BmgT120I GGNCC 6 cut(s) 16, 389, 533, 707, 827, 862
BmiI GGNNCC 5 cut(s) 17, 18, 63, 110, 292
BmrFI CCNGG 3 cut(s) 224, 253, 410
BmrI ACTGGG 1 cut(s) 802
BmsI GCATC 2 cut(s) 366, 470
BmuI ACTGGG 1 cut(s) 802
BpiI GAAGAC 1 cut(s) 753
Bpu14I TTCGAA 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 1102
BpuMI CCSGG 3 cut(s) 224, 253, 410
BsaAI YACGTR 2 cut(s) 75, 259
BsaHI GRCGYC 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 3 cut(s) 144, 409, 975
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 4 cut(s) 105, 300, 661, 903
Bse118I RCCGGY 1 cut(s) 58
Bse1I ACTGG 1 cut(s) 797
BseDI CCNNGG 3 cut(s) 144, 409, 975
BseGI GGATG 2 cut(s) 232, 381
BseLI CCNNNNNNNGG 4 cut(s) 105, 300, 661, 903
BseMII CTCAG 2 cut(s) 362, 1101
BseNI ACTGG 1 cut(s) 797
BseSI GKGCMC 2 cut(s) 92, 293
BseXI GCAGC 5 cut(s) 355, 637, 890, 893, 1079
BseYI CCCAGC 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 682
BshFI GGCC 3 cut(s) 576, 829, 863
BshNI GGYRCC 2 cut(s) 108, 290
BsiHKAI GWGCWC 3 cut(s) 80, 92, 669
BsiHKCI CYCGRG 1 cut(s) 899
BsiSI CCGG 4 cut(s) 59, 224, 252, 409
BslFI GGGAC 1 cut(s) 2
BslI CCNNNNNNNGG 4 cut(s) 105, 300, 661, 903
BsmAI GTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 2
BsmI GAATGC 1 cut(s) 1144
BsnI GGCC 3 cut(s) 576, 829, 863
Bso31I GGTCTC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 899
Bsp119I TTCGAA 1 cut(s) 312
Bsp1286I GDGCHC 5 cut(s) 80, 92, 293, 307, 669
Bsp143I GATC 3 cut(s) 123, 328, 886
BspACI CCGC 9 cut(s) 50, 53, 56, 65, 346, 387, 672, 830, 1210
BspANI GGCC 3 cut(s) 576, 829, 863
BspCNI CTCAG 2 cut(s) 363, 1102
BspFNI CGCG 1 cut(s) 682
BspLI GGNNCC 5 cut(s) 17, 18, 63, 110, 292
BspPI GGATC 1 cut(s) 336
BspQI GCTCTTC 1 cut(s) 49
BspT104I TTCGAA 1 cut(s) 312
BspT107I GGYRCC 2 cut(s) 108, 290
BspTNI GGTCTC 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 58
BsrI ACTGG 1 cut(s) 797
BssAI RCCGGY 1 cut(s) 58
BssECI CCNNGG 3 cut(s) 144, 409, 975
BssMI GATC 3 cut(s) 123, 328, 886
BssNI GRCGYC 1 cut(s) 83
BssSI CACGAG 1 cut(s) 113
BssT1I CCWWGG 2 cut(s) 144, 975
Bst2BI CACGAG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 49
BstACI GRCGYC 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 355
BstBAI YACGTR 2 cut(s) 75, 259
BstBI TTCGAA 1 cut(s) 312
BstC8I GCNNGC 7 cut(s) 60, 141, 283, 669, 676, 680, 876
BstDEI CTNAG 3 cut(s) 371, 1004, 1110
BstF5I GGATG 2 cut(s) 232, 381
BstFNI CGCG 1 cut(s) 682
BstKTI GATC 3 cut(s) 126, 331, 889
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 3 cut(s) 123, 328, 886
BstMWI GCNNNNNNNGC 3 cut(s) 64, 355, 826
BstNSI RCATGY 2 cut(s) 421, 814
BstSCI CCNGG 3 cut(s) 222, 251, 408
BstSLI GKGCMC 2 cut(s) 92, 293
BstUI CGCG 1 cut(s) 682
BstV1I GCAGC 5 cut(s) 355, 637, 890, 893, 1079
BstV2I GAAGAC 1 cut(s) 753
BstXI CCANNNNNNTGG 2 cut(s) 151, 584
BsuRI GGCC 3 cut(s) 576, 829, 863
BtsCI GGATG 2 cut(s) 232, 381
BtsI GCAGTG 1 cut(s) 1038
BtsIMutI CAGTG 5 cut(s) 133, 726, 1038, 1107, 1191
Cac8I GCNNGC 7 cut(s) 60, 141, 283, 669, 676, 680, 876
CaiI CAGNNNCTG 2 cut(s) 884, 1037
Cfr10I RCCGGY 1 cut(s) 58
Cfr13I GGNCC 6 cut(s) 16, 389, 533, 707, 827, 862
CseI GACGC 2 cut(s) 226, 328
Csp6I GTAC 5 cut(s) 133, 256, 544, 1078, 1165
CviAII CATG 4 cut(s) 151, 204, 418, 811
CviQI GTAC 5 cut(s) 133, 256, 544, 1078, 1165
DdeI CTNAG 3 cut(s) 371, 1004, 1110
DpnI GATC 3 cut(s) 125, 330, 888
DpnII GATC 3 cut(s) 123, 328, 886
DraIII CACNNNGTG 2 cut(s) 355, 661
EaeI YGGCCR 1 cut(s) 574
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco130I CCWWGG 2 cut(s) 144, 975
Eco24I GRGCYC 1 cut(s) 307
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 4 cut(s) 16, 389, 533, 707
Eco72I CACGTG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 899
EcoO109I RGGNCCY 2 cut(s) 16, 533
EcoT14I CCWWGG 2 cut(s) 144, 975
EcoT38I GRGCYC 1 cut(s) 307
ErhI CCWWGG 2 cut(s) 144, 975
FaeI CATG 4 cut(s) 154, 207, 421, 814
FalI AAGNNNNNCTT 4 cut(s) 1081, 1113, 1163, 1195
FaqI GGGAC 1 cut(s) 2
FatI CATG 4 cut(s) 150, 203, 417, 810
FauI CCCGC 2 cut(s) 57, 1203
FblI GTMKAC 1 cut(s) 851
FokI GGATG 2 cut(s) 239, 388
FriOI GRGCYC 1 cut(s) 307
GsaI CCCAGC 1 cut(s) 42
HaeIII GGCC 3 cut(s) 576, 829, 863
HapII CCGG 4 cut(s) 59, 224, 252, 409
HgaI GACGC 2 cut(s) 226, 328
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 4 cut(s) 154, 207, 421, 814
HincII GTYRAC 2 cut(s) 612, 634
HindII GTYRAC 2 cut(s) 612, 634
HindIII AAGCTT 1 cut(s) 590
HinfI GANTC 6 cut(s) 9, 156, 179, 731, 797, 1071
HpaII CCGG 4 cut(s) 59, 224, 252, 409
HphI GGTGA 1 cut(s) 1151
Hpy166II GTNNAC 5 cut(s) 90, 612, 634, 852, 998
Hpy188I TCNGA 5 cut(s) 178, 333, 372, 466, 1186
Hpy188III TCNNGA 1 cut(s) 901
Hpy8I GTNNAC 5 cut(s) 90, 612, 634, 852, 998
Hpy99I CGWCG 4 cut(s) 85, 88, 173, 242
HpyAV CCTTC 5 cut(s) 524, 573, 1107, 1165, 1200
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 7 cut(s) 74, 83, 168, 258, 542, 968, 1125
HpyCH4V TGCA 6 cut(s) 90, 358, 814, 962, 1031, 1130
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 355, 826
HpyF3I CTNAG 3 cut(s) 371, 1004, 1110
HpySE526I ACGT 7 cut(s) 74, 83, 168, 258, 542, 968, 1125
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 4 cut(s) 154, 207, 421, 814
KflI GGGWCCC 1 cut(s) 16
KroI GCCGGC 1 cut(s) 58
KroNI GCCGGC 1 cut(s) 60
Kzo9I GATC 3 cut(s) 123, 328, 886
LguI GCTCTTC 1 cut(s) 49
LmnI GCTCC 2 cut(s) 67, 763
Lsp1109I GCAGC 5 cut(s) 355, 637, 890, 893, 1079
LweI GCATC 2 cut(s) 366, 470
MaeII ACGT 7 cut(s) 74, 83, 168, 258, 542, 968, 1125
MaeIII GTNAC 3 cut(s) 70, 1121, 1153
MalI GATC 3 cut(s) 125, 330, 888
MboI GATC 3 cut(s) 123, 328, 886
MboII GAAGA 3 cut(s) 36, 650, 758
MhlI GDGCHC 5 cut(s) 80, 92, 293, 307, 669
MluCI AATT 5 cut(s) 314, 835, 841, 1022, 1042
MroNI GCCGGC 1 cut(s) 58
MseI TTAA 9 cut(s) 32, 120, 402, 474, 516, 713, 768, 1046, 1215
MslI CAYNNNNRTG 1 cut(s) 993
MspA1I CMGCKG 3 cut(s) 67, 346, 884
MspI CCGG 4 cut(s) 59, 224, 252, 409
MspR9I CCNGG 3 cut(s) 224, 253, 410
Mva1269I GAATGC 1 cut(s) 1144
MvnI CGCG 1 cut(s) 682
MwoI GCNNNNNNNGC 3 cut(s) 64, 355, 826
NaeI GCCGGC 1 cut(s) 60
NciI CCSGG 3 cut(s) 224, 253, 410
NdeII GATC 3 cut(s) 123, 328, 886
NgoMIV GCCGGC 1 cut(s) 58
NlaIII CATG 4 cut(s) 154, 207, 421, 814
NlaIV GGNNCC 5 cut(s) 17, 18, 63, 110, 292
NmuCI GTSAC 1 cut(s) 70
NspI RCATGY 2 cut(s) 421, 814
NspV TTCGAA 1 cut(s) 312
OliI CACNNNNGTG 1 cut(s) 993
PaeR7I CTCGAG 1 cut(s) 899
PciSI GCTCTTC 1 cut(s) 49
PcsI WCGNNNNNNNCGW 3 cut(s) 80, 165, 174
PctI GAATGC 1 cut(s) 1144
PdiI GCCGGC 1 cut(s) 60
PfeI GAWTC 6 cut(s) 9, 156, 179, 731, 797, 1071
PflMI CCANNNNNTGG 1 cut(s) 661
PmaCI CACGTG 1 cut(s) 75
PmlI CACGTG 1 cut(s) 75
Ppu21I YACGTR 2 cut(s) 75, 259
PpuMI RGGWCCY 2 cut(s) 16, 533
PsiI TTATAA 2 cut(s) 429, 491
Psp1406I AACGTT 1 cut(s) 968
Psp5II RGGWCCY 2 cut(s) 16, 533
PspCI CACGTG 1 cut(s) 75
PspFI CCCAGC 1 cut(s) 38
PspN4I GGNNCC 5 cut(s) 17, 18, 63, 110, 292
PspPI GGNCC 6 cut(s) 16, 389, 533, 707, 827, 862
PspPPI RGGWCCY 2 cut(s) 16, 533
PstNI CAGNNNCTG 2 cut(s) 884, 1037
PvuII CAGCTG 1 cut(s) 884
RsaI GTAC 5 cut(s) 134, 257, 545, 1079, 1166
RsaNI GTAC 5 cut(s) 133, 256, 544, 1078, 1165
RseI CAYNNNNRTG 1 cut(s) 993
SapI GCTCTTC 1 cut(s) 49
SaqAI TTAA 9 cut(s) 32, 120, 402, 474, 516, 713, 768, 1046, 1215
Sau3AI GATC 3 cut(s) 123, 328, 886
Sau96I GGNCC 6 cut(s) 16, 389, 533, 707, 827, 862
ScaI AGTACT 1 cut(s) 1079
ScrFI CCNGG 3 cut(s) 224, 253, 410
SduI GDGCHC 5 cut(s) 80, 92, 293, 307, 669
SfaNI GCATC 2 cut(s) 366, 470
Sfr274I CTCGAG 1 cut(s) 899
SfuI TTCGAA 1 cut(s) 312
SinI GGWCC 4 cut(s) 16, 389, 533, 707
SlaI CTCGAG 1 cut(s) 899
SmiMI CAYNNNNRTG 1 cut(s) 993
SmlI CTYRAG 2 cut(s) 899, 1081
SmoI CTYRAG 2 cut(s) 899, 1081
Sse9I AATT 5 cut(s) 314, 835, 841, 1022, 1042
SsiI CCGC 9 cut(s) 50, 53, 56, 65, 346, 387, 672, 830, 1210
StyD4I CCNGG 3 cut(s) 222, 251, 408
StyI CCWWGG 2 cut(s) 144, 975
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 7 cut(s) 77, 86, 171, 261, 545, 971, 1128
TaqI TCGA 4 cut(s) 80, 240, 312, 900
TasI AATT 5 cut(s) 314, 835, 841, 1022, 1042
TatI WGTACW 1 cut(s) 1077
TauI GCSGC 5 cut(s) 55, 58, 349, 674, 832
TfiI GAWTC 6 cut(s) 9, 156, 179, 731, 797, 1071
Tru1I TTAA 9 cut(s) 32, 120, 402, 474, 516, 713, 768, 1046, 1215
Tru9I TTAA 9 cut(s) 32, 120, 402, 474, 516, 713, 768, 1046, 1215
TscAI CASTG 5 cut(s) 133, 733, 1038, 1114, 1198
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 5 cut(s) 343, 650, 878, 881, 1092
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 3 cut(s) 39, 259, 775
TspGWI ACGGA 2 cut(s) 107, 1218
TspRI CASTG 5 cut(s) 133, 733, 1038, 1114, 1198
Van91I CCANNNNNTGG 1 cut(s) 661
VneI GTGCAC 1 cut(s) 88
VpaK11BI GGWCC 4 cut(s) 16, 389, 533, 707
XapI RAATTY 3 cut(s) 835, 1022, 1042
XceI RCATGY 2 cut(s) 421, 814
XhoI CTCGAG 1 cut(s) 899
XmiI GTMKAC 1 cut(s) 851
ZraI GACGTC 1 cut(s) 84
ZrmI AGTACT 1 cut(s) 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.