FvH4_2g24040

BTB POZ and MATH domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
19635832 .. 19639413
3582 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24040.t2

Sequence Viewer

Length: 1236 bp
ATGGGGAAGGTTCTCCTAGAAGCCTCCAGGCCGTCTTCTTCCTCGTCGCCGGCGAAGCCCCCGTCGCCGGCTCCGACGACGACATCTTCGACGTCGATCACGGAGACGGTGAACGGGACGCACCAGTTCAAGATCACCGGGTATTCGTTATCGAAAGGGATGGGGATTGGGAAATACGTGAGCTCCGATGTTTTCAATGTGGGTGGGTATTCTTGGGCCATCTACTTCTATCCCGACGGCAAGAGCGTCGAGGACAATGCCACATATGTGTCGCTCTTCATTGCCCTGGCCAGTGAGGGCAGCGATGTGAGGGCTTTGTTCGAGCTGACGCTTTTGGATCAGAGTGGGAATGGGAGGCACAAGGTTCATACCCATTTTGGGAGGTCGTTGGATAGCGGTCCGTATACGCTTAAGTATCGCGGTAGTATGTGGGGTTACAAGCGTTTTTTCAAAAGAACTTCGCTGGAGACATCAGACTACCTTAAAGATAATTGCCTCTCAGTCAACTGTATGGTTGGTGTTGTGAAATCACACACCGAAGGACCAAAAATATACTCTATAGCAGTACCACGATCTAACATGGGTCAATATTTTGGGCAACTACTAGAAAGTGGAAAGGGAACTGATGTAAATTTTGAAGTTGATGGGGAAACTTTTGCTGCTCACAAGTTGGTATTAGCAGCTCGATCACCTGTTTTCAGGGCCCAACTATTTGGTCCTATGAAAGATCAGAACTCGCAGTGCATAAATGTTGAGGACATAGAGGCTCCAGTCTTTAAGGCTTTACTTCATTTCATGTATTGGGATTCACTGCCTGACATTGAGGAGCTTACCGGCATCAATTCTCATGGAGCTTCCACTCTGATGGCTCAGCATCTGCTCGCGGCAGCAGATCGGTATGGCTTAGAAAGGCTAAGGTTGCTGTGCGAGCAAAATCTGTGCAAGGATGTAGCAATTAACACTGTGGCAACGACATTAGCTTTGGCAGAACAACATCACTGTTTCCAGTTGAAAGCTGTGTGTCTCAGATTCATTGCAACTCCTGGAAATCTACAAGGTGTGATGAAGACGGATGGTTATAAACACTTGAGGGAAAGCTGCCCGTCTGTTTTGACCGAACTCTTGGAATATGTAGCTAGAGTTGGTGAACATTCTGTATCTCAATGCAGGATTGGTAATGAAGCTATTCTTGATGGTAGTGACATTAATGGCAGGCGAGTGAAGCAAAGGCTATAG

Protein Analysis

412

Amino Acids

45.17

Weight (kDa)

7.61

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 112 - 229 4.3e-22 BTB/POZ domain
BACK_BPM_SPOP PF24570 235 - 289 2.3e-29 BPM/SPOP, BACK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1080
AatII GACGTC 1 cut(s) 95
AccI GTMKAC 1 cut(s) 404
AccII CGCG 2 cut(s) 420, 884
AciI CCGC 3 cut(s) 396, 420, 884
AclWI GGATC 1 cut(s) 345
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 1 cut(s) 631
AcyI GRCGYC 1 cut(s) 92
AfaI GTAC 1 cut(s) 567
AfiI CCNNNNNNNGG 2 cut(s) 67, 378
AflII CTTAAG 1 cut(s) 410
AgsI TTSAA 5 cut(s) 130, 196, 451, 638, 1012
AjnI CCWGG 3 cut(s) 26, 285, 1042
AleI CACNNNNGTG 1 cut(s) 266
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 3 cut(s) 98, 461, 1028
AlwI GGATC 1 cut(s) 345
AlwNI CAGNNNCTG 1 cut(s) 877
AoxI GGCC 4 cut(s) 29, 216, 288, 702
ApaI GGGCCC 1 cut(s) 706
ApeKI GCWGC 5 cut(s) 300, 659, 680, 887, 1098
ApoI RAATTY 1 cut(s) 631
ArsI GACNNNNNNTTYG 6 cut(s) 47, 70, 79, 102, 964, 996
AseI ATTAAT 1 cut(s) 1206
Asp700I GAANNNNTTC 1 cut(s) 1185
AspS9I GGNCC 6 cut(s) 216, 398, 542, 702, 703, 716
AsuC2I CCSGG 1 cut(s) 139
AsuHPI GGTGA 4 cut(s) 121, 127, 681, 1157
AvaII GGWCC 3 cut(s) 398, 542, 716
BaeGI GKGCMC 1 cut(s) 706
BalI TGGCCA 1 cut(s) 290
BanII GRGCYC 2 cut(s) 185, 706
BbsI GAAGAC 2 cut(s) 27, 1073
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 5 cut(s) 312, 646, 692, 899, 1085
BccI CCATC 6 cut(s) 154, 227, 638, 859, 1067, 1187
BceAI ACGGC 2 cut(s) 16, 253
BcgI CGANNNNNNTGC 4 cut(s) 229, 239, 263, 273
BciT130I CCWGG 3 cut(s) 28, 287, 1044
BcnI CCSGG 1 cut(s) 139
BcoDI GTCTC 3 cut(s) 98, 461, 1028
BfaI CTAG 3 cut(s) 17, 605, 1137
BfmI CTRYAG 2 cut(s) 558, 1232
BfrI CTTAAG 1 cut(s) 410
BisI GCNGC 6 cut(s) 301, 660, 681, 885, 888, 1099
BlpI GCTNAGC 1 cut(s) 870
BlsI GCNGC 6 cut(s) 302, 661, 682, 886, 889, 1100
Bme1390I CCNGG 4 cut(s) 28, 139, 287, 1044
Bme18I GGWCC 3 cut(s) 398, 542, 716
BmgT120I GGNCC 6 cut(s) 216, 398, 542, 702, 703, 716
BmiI GGNNCC 3 cut(s) 72, 704, 768
BmrFI CCNGG 4 cut(s) 28, 139, 287, 1044
BmsI GCATC 2 cut(s) 846, 883
BpiI GAAGAC 2 cut(s) 27, 1073
BpmI CTGGAG 3 cut(s) 10, 485, 753
Bpu10I CCTNAGC 1 cut(s) 914
Bpu1102I GCTNAGC 1 cut(s) 870
BpuEI CTTGAG 1 cut(s) 1108
BpuMI CCSGG 1 cut(s) 139
BsaAI YACGTR 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 285
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 378
Bse118I RCCGGY 3 cut(s) 49, 67, 833
Bse1I ACTGG 4 cut(s) 124, 291, 770, 1006
Bse3DI GCAATG 2 cut(s) 279, 1032
BseBI CCWGG 3 cut(s) 28, 287, 1044
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 3 cut(s) 165, 952, 1078
BseLI CCNNNNNNNGG 2 cut(s) 67, 378
BseMI GCAATG 2 cut(s) 279, 1032
BseMII CTCAG 3 cut(s) 513, 884, 1039
BseNI ACTGG 4 cut(s) 124, 291, 770, 1006
BseRI GAGGAG 1 cut(s) 839
BseSI GKGCMC 1 cut(s) 706
BseXI GCAGC 5 cut(s) 312, 646, 692, 899, 1085
Bsh1236I CGCG 2 cut(s) 420, 884
BshFI GGCC 4 cut(s) 31, 218, 290, 704
BsiHKAI GWGCWC 1 cut(s) 185
BsiSI CCGG 4 cut(s) 50, 68, 138, 834
BslFI GGGAC 1 cut(s) 130
BslI CCNNNNNNNGG 2 cut(s) 67, 378
BsmAI GTCTC 3 cut(s) 98, 461, 1028
BsmBI CGTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 130
BsnI GGCC 4 cut(s) 31, 218, 290, 704
Bsp120I GGGCCC 1 cut(s) 702
Bsp1286I GDGCHC 2 cut(s) 185, 706
Bsp143I GATC 7 cut(s) 96, 132, 337, 572, 686, 727, 892
Bsp1720I GCTNAGC 1 cut(s) 870
BspACI CCGC 3 cut(s) 396, 420, 884
BspANI GGCC 4 cut(s) 31, 218, 290, 704
BspCNI CTCAG 3 cut(s) 512, 883, 1038
BspFNI CGCG 2 cut(s) 420, 884
BspLI GGNNCC 3 cut(s) 72, 704, 768
BspPI GGATC 1 cut(s) 345
BspQI GCTCTTC 1 cut(s) 281
BspTI CTTAAG 1 cut(s) 410
BsrDI GCAATG 2 cut(s) 279, 1032
BsrFI RCCGGY 3 cut(s) 49, 67, 833
BsrI ACTGG 4 cut(s) 124, 291, 770, 1006
BssAI RCCGGY 3 cut(s) 49, 67, 833
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 7 cut(s) 96, 132, 337, 572, 686, 727, 892
BssNAI GTATAC 1 cut(s) 405
BssNI GRCGYC 1 cut(s) 92
Bst1107I GTATAC 1 cut(s) 405
Bst2UI CCWGG 3 cut(s) 28, 287, 1044
Bst4CI ACNGT 4 cut(s) 109, 509, 964, 1001
Bst6I CTCTTC 1 cut(s) 281
BstACI GRCGYC 1 cut(s) 92
BstAFI CTTAAG 1 cut(s) 410
BstBAI YACGTR 1 cut(s) 178
BstC8I GCNNGC 5 cut(s) 51, 69, 882, 929, 1214
BstDEI CTNAG 5 cut(s) 499, 870, 904, 914, 1025
BstF5I GGATG 3 cut(s) 165, 952, 1078
BstFNI CGCG 2 cut(s) 420, 884
BstKTI GATC 7 cut(s) 99, 135, 340, 575, 689, 730, 895
BstMAI GTCTC 3 cut(s) 98, 461, 1028
BstMBI GATC 7 cut(s) 96, 132, 337, 572, 686, 727, 892
BstMWI GCNNNNNNNGC 5 cut(s) 55, 64, 919, 928, 1222
BstNI CCWGG 3 cut(s) 28, 287, 1044
BstSCI CCNGG 4 cut(s) 26, 137, 285, 1042
BstSFI CTRYAG 2 cut(s) 558, 1232
BstSLI GKGCMC 1 cut(s) 706
BstUI CGCG 2 cut(s) 420, 884
BstV1I GCAGC 5 cut(s) 312, 646, 692, 899, 1085
BstV2I GAAGAC 2 cut(s) 27, 1073
BstXI CCANNNNNNTGG 2 cut(s) 713, 865
BstZ17I GTATAC 1 cut(s) 405
BsuRI GGCC 4 cut(s) 31, 218, 290, 704
BtgZI GCGATG 1 cut(s) 318
BtsCI GGATG 3 cut(s) 165, 952, 1078
BtsI GCAGTG 2 cut(s) 746, 809
BtsIMutI CAGTG 5 cut(s) 298, 746, 809, 960, 997
Cac8I GCNNGC 5 cut(s) 51, 69, 882, 929, 1214
CaiI CAGNNNCTG 1 cut(s) 877
Cfr10I RCCGGY 3 cut(s) 49, 67, 833
Cfr13I GGNCC 6 cut(s) 216, 398, 542, 702, 703, 716
CpoI CGGWCCG 1 cut(s) 398
CseI GACGC 3 cut(s) 127, 235, 337
Csp6I GTAC 1 cut(s) 566
CspCI CAANNNNNGTGG 2 cut(s) 184, 219
CspI CGGWCCG 1 cut(s) 398
CviAII CATG 3 cut(s) 580, 796, 848
CviQI GTAC 1 cut(s) 566
DdeI CTNAG 5 cut(s) 499, 870, 904, 914, 1025
DpnI GATC 7 cut(s) 98, 134, 339, 574, 688, 729, 894
DpnII GATC 7 cut(s) 96, 132, 337, 572, 686, 727, 892
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Ecl136II GAGCTC 1 cut(s) 183
Eco24I GRGCYC 2 cut(s) 185, 706
Eco47I GGWCC 3 cut(s) 398, 542, 716
Eco53kI GAGCTC 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 702
EcoRII CCWGG 3 cut(s) 26, 285, 1042
EcoT38I GRGCYC 2 cut(s) 185, 706
Esp3I CGTCTC 1 cut(s) 98
FaeI CATG 3 cut(s) 583, 799, 851
FalI AAGNNNNNCTT 2 cut(s) 1173, 1205
FaqI GGGAC 1 cut(s) 130
FatI CATG 3 cut(s) 579, 795, 847
FauNDI CATATG 1 cut(s) 265
FblI GTMKAC 1 cut(s) 404
Fnu4HI GCNGC 6 cut(s) 301, 660, 681, 885, 888, 1099
FokI GGATG 3 cut(s) 172, 959, 1085
FriOI GRGCYC 2 cut(s) 185, 706
Fsp4HI GCNGC 6 cut(s) 301, 660, 681, 885, 888, 1099
FspBI CTAG 3 cut(s) 17, 605, 1137
GluI GCNGC 6 cut(s) 301, 660, 681, 885, 888, 1099
GsuI CTGGAG 3 cut(s) 10, 485, 753
HaeIII GGCC 4 cut(s) 31, 218, 290, 704
HapII CCGG 4 cut(s) 50, 68, 138, 834
HgaI GACGC 3 cut(s) 127, 235, 337
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 3 cut(s) 583, 799, 851
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HinfI GANTC 2 cut(s) 806, 1029
HpaII CCGG 4 cut(s) 50, 68, 138, 834
HphI GGTGA 4 cut(s) 121, 127, 681, 1157
Hpy166II GTNNAC 4 cut(s) 112, 405, 505, 1148
Hpy188I TCNGA 7 cut(s) 75, 187, 342, 475, 732, 864, 1028
Hpy188III TCNNGA 3 cut(s) 130, 233, 1190
Hpy8I GTNNAC 4 cut(s) 112, 405, 505, 1148
Hpy99I CGWCG 8 cut(s) 49, 67, 79, 82, 94, 97, 239, 251
HpyAV CCTTC 1 cut(s) 533
HpyCH4III ACNGT 4 cut(s) 109, 509, 964, 1001
HpyCH4IV ACGT 2 cut(s) 92, 177
HpyCH4V TGCA 4 cut(s) 744, 942, 1037, 1167
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 64, 919, 928, 1222
HpyF3I CTNAG 5 cut(s) 499, 870, 904, 914, 1025
HpySE526I ACGT 2 cut(s) 92, 177
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 3 cut(s) 583, 799, 851
KroI GCCGGC 2 cut(s) 49, 67
KroNI GCCGGC 2 cut(s) 51, 69
Kzo9I GATC 7 cut(s) 96, 132, 337, 572, 686, 727, 892
LguI GCTCTTC 1 cut(s) 281
LmnI GCTCC 5 cut(s) 76, 188, 772, 826, 851
Lsp1109I GCAGC 5 cut(s) 312, 646, 692, 899, 1085
LweI GCATC 2 cut(s) 846, 883
MaeI CTAG 3 cut(s) 17, 605, 1137
MaeII ACGT 2 cut(s) 92, 177
MaeIII GTNAC 2 cut(s) 434, 1199
MalI GATC 7 cut(s) 98, 134, 339, 574, 688, 729, 894
MboI GATC 7 cut(s) 96, 132, 337, 572, 686, 727, 892
MboII GAAGA 5 cut(s) 27, 30, 78, 268, 1078
MhlI GDGCHC 2 cut(s) 185, 706
MlsI TGGCCA 1 cut(s) 290
MluCI AATT 4 cut(s) 490, 631, 841, 954
MluNI TGGCCA 1 cut(s) 290
MmeI TCCRAC 2 cut(s) 98, 369
Mox20I TGGCCA 1 cut(s) 290
MreI CGCCGGCG 1 cut(s) 49
MroNI GCCGGC 2 cut(s) 49, 67
MroXI GAANNNNTTC 1 cut(s) 1185
MscI TGGCCA 1 cut(s) 290
MseI TTAA 5 cut(s) 411, 483, 777, 957, 1206
MslI CAYNNNNRTG 2 cut(s) 266, 863
Msp20I TGGCCA 1 cut(s) 290
MspCI CTTAAG 1 cut(s) 410
MspI CCGG 4 cut(s) 50, 68, 138, 834
MspR9I CCNGG 4 cut(s) 28, 139, 287, 1044
MvaI CCWGG 3 cut(s) 28, 287, 1044
MvnI CGCG 2 cut(s) 420, 884
MwoI GCNNNNNNNGC 5 cut(s) 55, 64, 919, 928, 1222
NaeI GCCGGC 2 cut(s) 51, 69
NciI CCSGG 1 cut(s) 139
NdeI CATATG 1 cut(s) 265
NdeII GATC 7 cut(s) 96, 132, 337, 572, 686, 727, 892
NgoMIV GCCGGC 2 cut(s) 49, 67
NlaIII CATG 3 cut(s) 583, 799, 851
NlaIV GGNNCC 3 cut(s) 72, 704, 768
NmuCI GTSAC 1 cut(s) 1199
OliI CACNNNNGTG 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 281
PcsI WCGNNNNNNNCGW 5 cut(s) 50, 71, 86, 183, 243
PdiI GCCGGC 2 cut(s) 51, 69
PdmI GAANNNNTTC 1 cut(s) 1185
PfeI GAWTC 2 cut(s) 806, 1029
PfoI TCCNGGA 1 cut(s) 1042
PkrI GCNGC 6 cut(s) 302, 661, 682, 886, 889, 1100
Ppu21I YACGTR 1 cut(s) 178
PshBI ATTAAT 1 cut(s) 1206
PsiI TTATAA 1 cut(s) 1080
Psp124BI GAGCTC 1 cut(s) 185
Psp6I CCWGG 3 cut(s) 26, 285, 1042
PspGI CCWGG 3 cut(s) 26, 285, 1042
PspN4I GGNNCC 3 cut(s) 72, 704, 768
PspOMI GGGCCC 1 cut(s) 702
PspPI GGNCC 6 cut(s) 216, 398, 542, 702, 703, 716
PstNI CAGNNNCTG 1 cut(s) 877
RsaI GTAC 1 cut(s) 567
RsaNI GTAC 1 cut(s) 566
RseI CAYNNNNRTG 2 cut(s) 266, 863
Rsr2I CGGWCCG 1 cut(s) 398
RsrII CGGWCCG 1 cut(s) 398
SacI GAGCTC 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 281
SaqAI TTAA 5 cut(s) 411, 483, 777, 957, 1206
SatI GCNGC 6 cut(s) 301, 660, 681, 885, 888, 1099
Sau3AI GATC 7 cut(s) 96, 132, 337, 572, 686, 727, 892
Sau96I GGNCC 6 cut(s) 216, 398, 542, 702, 703, 716
ScrFI CCNGG 4 cut(s) 28, 139, 287, 1044
SduI GDGCHC 2 cut(s) 185, 706
SfaNI GCATC 2 cut(s) 846, 883
SfcI CTRYAG 2 cut(s) 558, 1232
SgrAI CRCCGGYG 1 cut(s) 49
SinI GGWCC 3 cut(s) 398, 542, 716
SmiMI CAYNNNNRTG 2 cut(s) 266, 863
SmlI CTYRAG 2 cut(s) 410, 1087
SmoI CTYRAG 2 cut(s) 410, 1087
Sse9I AATT 4 cut(s) 490, 631, 841, 954
SsiI CCGC 3 cut(s) 396, 420, 884
SspI AATATT 1 cut(s) 590
SspMI CTAG 3 cut(s) 17, 605, 1137
SstI GAGCTC 1 cut(s) 185
StyD4I CCNGG 4 cut(s) 26, 137, 285, 1042
TaaI ACNGT 4 cut(s) 109, 509, 964, 1001
TaiI ACGT 2 cut(s) 95, 180
TaqI TCGA 6 cut(s) 89, 95, 152, 249, 321, 685
TaqII GACCGA 1 cut(s) 1130
TasI AATT 4 cut(s) 490, 631, 841, 954
TauI GCSGC 1 cut(s) 887
TfiI GAWTC 2 cut(s) 806, 1029
Tru1I TTAA 5 cut(s) 411, 483, 777, 957, 1206
Tru9I TTAA 5 cut(s) 411, 483, 777, 957, 1206
TscAI CASTG 5 cut(s) 298, 746, 816, 967, 1004
TseFI GTSAC 1 cut(s) 1199
TseI GCWGC 5 cut(s) 300, 659, 680, 887, 1098
Tsp45I GTSAC 1 cut(s) 1199
TspDTI ATGAA 8 cut(s) 268, 356, 737, 779, 784, 1021, 1079, 1194
TspGWI ACGGA 3 cut(s) 116, 390, 1085
TspRI CASTG 5 cut(s) 298, 746, 816, 967, 1004
Vha464I CTTAAG 1 cut(s) 410
VpaK11BI GGWCC 3 cut(s) 398, 542, 716
VspI ATTAAT 1 cut(s) 1206
XapI RAATTY 1 cut(s) 631
XmiI GTMKAC 1 cut(s) 404
XmnI GAANNNNTTC 1 cut(s) 1185
XspI CTAG 3 cut(s) 17, 605, 1137
ZraI GACGTC 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.