Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002184

Physical Location & Seq

Genomic Coordinates Reverse (-)

35470432 .. 35472162

Gene Structure 1731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0221500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCTCTGGAAAACTGCTTGCAACTAAGCACAGTGTGCACTACTAGGGTTGGTGCAGCACAATGCTACCAGCCATTTTCTTCTAAAGAGAAGCTTATTGTGCCAACTTGTAATGGATTGAGGAAGTCTGGTTTGAAGTTCTCCTCATCTTCATCCTTCGTCGCCCGTCCGAAAAGCACTCGGTTCCAGAAATCCGGCTTTGTTTGCAAAGCTCGTGAAGCTGTGGATCAAGTTCAAGTGGTGACAGATTCAAGCTGGAATAACCTTGTCATTGCAAGTGAGAACCCAGTTCTGGTGGAGTTTTGGGCACCATGGTGTGGACCATGCCGGATGATTGCTCCGGTGATCGACGAGTTGGCAAAAGAATATGCTGGGAAGATAAACTGCTTCAAGCTCAACACTGATGACAGCCCCAACACTGCCACTCAATATGGCATAAGGAGTATTCCCACCGTGCTCTTCTTCAAAGGTGGAGAGAAGAAAGAAAGTGTTATTGGTGCAGTGCCCAAGTCCACCTTGTCTGCTACCATAGAAAAATATGTAGATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0031668 GO:0033554 GO:0042221 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071470 GO:0071472 GO:0071496 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB LSM

Protein Analysis

183

Amino Acids

20.03

Weight (kDa)

8.91

Isoelectric Point (pI)

30.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	78 - 179	6.8e-32	Thioredoxin
Thioredoxin_9	PF14595	90 - 172	1.1e-06	Thioredoxin
Thioredoxin_2	PF13098	93 - 176	7.3e-08	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06190 AT3G06190 AT3G06190 AT3G06190 AT3G06190 AT5G19000 AT5G19000 AT5G19000
fragaria_vesca	FvH4_2g24040 FvH4_2g24040 FvH4_4g14240 FvH4_4g14240 FvH4_4g14240 FvH4_4g14240
malus_domestica	MD03G1269700.v1.1 MD11G1290500.v1.1 MD13G1181000.v1.1 MD16G1181700.v1.1
prunus_persica	Prupe.1G149100_v2.0.a1 Prupe.8G245800_v2.0.a1
pyrus_communis	pycom03g21500 pycom11g25780 pycom13g15620 pycom16g15250
rosa_chinensis	RchiOBHm_Chr4g0418941 RchiOBHm_Chr6g0291771
rosa_laevigata	RLG00000007840 RLG00000012086
rosa_multiflora	Rmu_sc0000935.1_g000060 Rmu_sc0002226.1_g000029 Rmu_sc0002713.1_g000011
rosa_roxburghii	Rroxscaffold_5G00362030 Rroxscaffold_7G00175770
rosa_rugosa	Rorug04G0155300 Rorug06G0221500
rosa_samantha	Rh4AG217300 Rh4BG213100 Rh6AG334300 Rh6BG341500 Rh6CG347500 Rh6DG334600
rosa_wichuraiana	Rw4G018570 Rw6G029100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	307
AccB7I	CCANNNNNTGG	1 cut(s)	317
AclWI	GGATC	1 cut(s)	234
AdeI	CACNNNGTG	1 cut(s)	36
AfiI	CCNNNNNNNGG	2 cut(s)	292, 317
AgsI	TTSAA	5 cut(s)	136, 236, 252, 391, 466
AjuI	GAANNNNNNNTTGG	2 cut(s)	477, 509
AleI	CACNNNNGTG	1 cut(s)	313
AluBI	AGCT	5 cut(s)	94, 212, 221, 255, 394
AluI	AGCT	5 cut(s)	94, 212, 221, 255, 394
Alw21I	GWGCWC	2 cut(s)	41, 459
Alw44I	GTGCAC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	234
ApaLI	GTGCAC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	320
AsuHPI	GGTGA	2 cut(s)	253, 355
AvaII	GGWCC	1 cut(s)	320
BaeGI	GKGCMC	3 cut(s)	41, 310, 507
BanI	GGYRCC	1 cut(s)	307
BauI	CACGAG	1 cut(s)	213
Bbv12I	GWGCWC	2 cut(s)	41, 459
BbvI	GCAGC	1 cut(s)	68
BfaI	CTAG	1 cut(s)	45
BglII	AGATCT	1 cut(s)	544
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	2 cut(s)	185, 309
BmrI	ACTGGG	1 cut(s)	281
BmuI	ACTGGG	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	311
BsaWI	WCCGGW	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 317
Bse1I	ACTGG	1 cut(s)	287
Bse3DI	GCAATG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	311
BseGI	GGATG	2 cut(s)	152, 336
BseLI	CCNNNNNNNGG	2 cut(s)	292, 317
BseMI	GCAATG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	1 cut(s)	133
BseSI	GKGCMC	3 cut(s)	41, 310, 507
BseXI	GCAGC	1 cut(s)	68
BseYI	CCCAGC	1 cut(s)	371
BsgI	GTGCAG	2 cut(s)	75, 519
BshNI	GGYRCC	1 cut(s)	307
BsiHKAI	GWGCWC	2 cut(s)	41, 459
BsiSI	CCGG	3 cut(s)	195, 328, 341
BslI	CCNNNNNNNGG	2 cut(s)	292, 317
Bsp1286I	GDGCHC	4 cut(s)	41, 310, 459, 507
Bsp143I	GATC	3 cut(s)	226, 345, 544
Bsp19I	CCATGG	1 cut(s)	311
BspLI	GGNNCC	2 cut(s)	185, 309
BspPI	GGATC	1 cut(s)	234
BspQI	GCTCTTC	1 cut(s)	464
BspT107I	GGYRCC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	311
BssMI	GATC	3 cut(s)	226, 345, 544
BssSI	CACGAG	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	311
Bst2BI	CACGAG	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	34, 454
Bst6I	CTCTTC	1 cut(s)	464
BstAPI	GCANNNNNTGC	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	26
BstDSI	CCRYGG	1 cut(s)	311
BstF5I	GGATG	2 cut(s)	152, 336
BstKTI	GATC	3 cut(s)	229, 348, 547
BstMBI	GATC	3 cut(s)	226, 345, 544
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 100, 204, 218
BstSLI	GKGCMC	3 cut(s)	41, 310, 507
BstV1I	GCAGC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
BtgI	CCRYGG	1 cut(s)	311
BtsCI	GGATG	2 cut(s)	152, 336
BtsI	GCAGTG	2 cut(s)	417, 507
BtsIMutI	CAGTG	4 cut(s)	39, 399, 417, 507
Cac8I	GCNNGC	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	320
CviAII	CATG	2 cut(s)	312, 324
CviJI	RGCY	9 cut(s)	5, 73, 94, 198, 212, 221, 255, 394, 411
CviKI_1	RGCY	9 cut(s)	5, 73, 94, 198, 212, 221, 255, 394, 411
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	3 cut(s)	228, 347, 546
DpnII	GATC	3 cut(s)	226, 345, 544
DraIII	CACNNNGTG	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Eco130I	CCWWGG	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	320
EcoT14I	CCWWGG	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	311
FaeI	CATG	2 cut(s)	315, 327
FaiI	YATR	7 cut(s)	313, 325, 369, 432, 437, 530, 540
FalI	AAGNNNNNCTT	4 cut(s)	78, 110, 500, 532
FatI	CATG	2 cut(s)	311, 323
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	2 cut(s)	139, 343
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	1 cut(s)	57
GsaI	CCCAGC	1 cut(s)	375
HapII	CCGG	3 cut(s)	195, 328, 341
Hin1II	CATG	2 cut(s)	315, 327
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	248
HpaII	CCGG	3 cut(s)	195, 328, 341
HphI	GGTGA	2 cut(s)	253, 355
Hpy166II	GTNNAC	3 cut(s)	39, 320, 513
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	3 cut(s)	8, 187, 215
Hpy8I	GTNNAC	3 cut(s)	39, 320, 513
Hpy99I	CGWCG	2 cut(s)	164, 353
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	2 cut(s)	34, 454
HpyCH4V	TGCA	6 cut(s)	22, 39, 56, 207, 275, 500
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 100, 204, 218
HpyF3I	CTNAG	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	315, 327
Kzo9I	GATC	3 cut(s)	226, 345, 544
LguI	GCTCTTC	1 cut(s)	464
LmnI	GCTCC	1 cut(s)	343
Lsp1109I	GCAGC	1 cut(s)	68
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	3 cut(s)	228, 347, 546
MboI	GATC	3 cut(s)	226, 345, 544
MboII	GAAGA	6 cut(s)	72, 141, 388, 451, 454, 490
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	4 cut(s)	41, 310, 459, 507
MnlI	CCTC	2 cut(s)	114, 154
MseI	TTAA	1 cut(s)	550
MslI	CAYNNNNRTG	1 cut(s)	313
MspI	CCGG	3 cut(s)	195, 328, 341
MwoI	GCNNNNNNNGC	4 cut(s)	36, 100, 204, 218
NcoI	CCATGG	1 cut(s)	311
NdeII	GATC	3 cut(s)	226, 345, 544
NlaIII	CATG	2 cut(s)	315, 327
NlaIV	GGNNCC	2 cut(s)	185, 309
NmuCI	GTSAC	1 cut(s)	241
OliI	CACNNNNGTG	1 cut(s)	313
PciSI	GCTCTTC	1 cut(s)	464
PfeI	GAWTC	1 cut(s)	248
PflMI	CCANNNNNTGG	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	185, 309
PspPI	GGNCC	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	544
RseI	CAYNNNNRTG	1 cut(s)	313
SapI	GCTCTTC	1 cut(s)	464
SaqAI	TTAA	1 cut(s)	550
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	3 cut(s)	226, 345, 544
Sau96I	GGNCC	1 cut(s)	320
SduI	GDGCHC	4 cut(s)	41, 310, 459, 507
SetI	ASST	8 cut(s)	96, 214, 223, 257, 267, 396, 472, 518
SinI	GGWCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	313
SspMI	CTAG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	311
TaaI	ACNGT	2 cut(s)	34, 454
TaqI	TCGA	1 cut(s)	348
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	1 cut(s)	550
Tru9I	TTAA	1 cut(s)	550
TscAI	CASTG	4 cut(s)	39, 406, 424, 507
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	141
TspRI	CASTG	4 cut(s)	39, 406, 424, 507
Van91I	CCANNNNNTGG	1 cut(s)	317
VneI	GTGCAC	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	320
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.