FvH4_4g14240

BTB POZ and MATH domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
17808972 .. 17814945
5974 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14240.t1

Sequence Viewer

Length: 1053 bp
ATGGGCACAATCAAGGTCCGCAGCGACAAATCAAAACCCTCGCCGCCGTCGCCGACGCCGACCACGTGCTCGACGTCGTGCACCGAGACCATCAATGGCTGCCACGAGTTCAAGATCAGCGGCTACTCGCTCACCAAGGGCATGGGGATCGGTAAGTACATCGGGTCGGAGCAGTTCAACGTCGGCGGGTACACGTGGGCCATATACTTCTACCCCGACGGTAAAAGCGTCGAGGACAACGCCAATTACGTGTCGCTGTTCATCGCGCTGGCCAGCGAAGGCACTGACGTCAGGGCTTTGTTTGAGCTGACGCTTTTGGATCAGAGCGAGAGGCAACGCCACAAGGTCCATAGCCATTTTCTCAGGAGGCTCGAGAGTGGTCCTTACACGCTTAAATACCGAGGAAGCATGTGGGGTTATAAACGTTTCTTCAGAAGAAGTCTCTTAGAGACATCAGACCACATTAAAGATGATTGCCTCATAATAAGGTGCCGTGTAGGTGTTGTTAGGACAAATACGGAGGGACCCAAGACATACGCTATAGCAGTACCACCTTCCAATATGGGTCAGCATTTTGGTCAGCTTTTAGAAAGTGGTAAGGGGACAGATGTGAGTTTTGAAGTTGATCAGGAAGTATTTTCTGCCCACAAAGTGGTGCTTGCTGCACGCTCACCTGTGTTCAGGGCACAACTTTTTGGTCCATTGAAAGATAAAAACTCTTGTTGCATAAAGGTTGAAGACATCGAGGCTCCTGTGTTTAAGGTGTTACTTCACTTCATCTATTGGGATGCTTTACCAGACATGGAAGAGCTTCTGGGGCTAAGTTCGAATTGGGCTTCTGCACAGACTACACTTATGGCCCAACATCTGCTGGCAGCAGCAGATCGTTATGCTCTCGAGAGGCTCAAAGTGCTGTGTGAGGCTAAACTTTGTGAGAATGTAGCCATAAACAATGTGGCAACAACATTGGCCTTGGCAGAGCAGCATCACTGTTTCCAACTTAAAGCCGTATGTCTCAAATTCATTGCGGTGCCGGAAAACTTAAGAGGATAG

Protein Analysis

351

Amino Acids

39.06

Weight (kDa)

8.22

Isoelectric Point (pI)

35.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 35 - 166 1.3e-31 MATH domain
BTB PF00651 192 - 313 2.5e-20 BTB/POZ domain
BACK_BPM_SPOP PF24570 318 - 349 6e-14 BPM/SPOP, BACK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 420
AatII GACGTC 2 cut(s) 77, 291
AccB1I GGYRCC 2 cut(s) 489, 1030
AccB7I CCANNNNNTGG 1 cut(s) 652
AccII CGCG 1 cut(s) 266
AciI CCGC 5 cut(s) 19, 44, 120, 186, 1028
AclI AACGTT 1 cut(s) 424
AclWI GGATC 2 cut(s) 155, 327
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 1 cut(s) 1019
AcuI CTGAAG 1 cut(s) 415
AcvI CACGTG 2 cut(s) 66, 195
AcyI GRCGYC 3 cut(s) 56, 74, 288
AdeI CACNNNGTG 1 cut(s) 652
AfaI GTAC 3 cut(s) 158, 191, 549
AfiI CCNNNNNNNGG 1 cut(s) 652
AflII CTTAAG 1 cut(s) 1042
AflIII ACRYGT 2 cut(s) 192, 249
AgsI TTSAA 5 cut(s) 112, 178, 620, 706, 737
AluBI AGCT 3 cut(s) 307, 583, 811
AluI AGCT 3 cut(s) 307, 583, 811
Alw21I GWGCWC 2 cut(s) 71, 83
Alw26I GTCTC 4 cut(s) 80, 443, 446, 1019
Alw44I GTGCAC 1 cut(s) 79
AlwI GGATC 2 cut(s) 155, 327
Ama87I CYCGRG 2 cut(s) 371, 896
AoxI GGCC 4 cut(s) 198, 270, 858, 969
ApaLI GTGCAC 1 cut(s) 79
ApeKI GCWGC 6 cut(s) 21, 99, 662, 875, 878, 982
ApoI RAATTY 1 cut(s) 1019
Asp700I GAANNNNTTC 1 cut(s) 810
AspLEI GCGC 1 cut(s) 268
AspS9I GGNCC 7 cut(s) 16, 198, 346, 380, 524, 698, 859
AsuHPI GGTGA 2 cut(s) 124, 663
AsuII TTCGAA 1 cut(s) 827
AvaI CYCGRG 2 cut(s) 371, 896
AvaII GGWCC 5 cut(s) 16, 346, 380, 524, 698
BaeGI GKGCMC 3 cut(s) 8, 83, 688
BalI TGGCCA 1 cut(s) 272
BanI GGYRCC 2 cut(s) 489, 1030
BauI CACGAG 1 cut(s) 104
BbrPI CACGTG 2 cut(s) 66, 195
BbsI GAAGAC 1 cut(s) 744
Bbv12I GWGCWC 2 cut(s) 71, 83
BbvI GCAGC 6 cut(s) 33, 86, 649, 887, 890, 994
BccI CCATC 1 cut(s) 98
BceAI ACGGC 3 cut(s) 31, 477, 992
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BclI TGATCA 1 cut(s) 625
BcoDI GTCTC 4 cut(s) 80, 443, 446, 1019
BfmI CTRYAG 1 cut(s) 540
BfrI CTTAAG 1 cut(s) 1042
BisI GCNGC 8 cut(s) 22, 44, 100, 121, 663, 876, 879, 983
BlsI GCNGC 8 cut(s) 23, 45, 101, 122, 664, 877, 880, 984
Bme18I GGWCC 5 cut(s) 16, 346, 380, 524, 698
BmeT110I CYCGRG 2 cut(s) 371, 896
BmgT120I GGNCC 7 cut(s) 16, 198, 346, 380, 524, 698, 859
BmiI GGNNCC 5 cut(s) 491, 525, 526, 750, 1032
BmsI GCATC 2 cut(s) 778, 994
BpiI GAAGAC 1 cut(s) 744
Bpu14I TTCGAA 1 cut(s) 827
BsaAI YACGTR 3 cut(s) 66, 195, 250
BsaHI GRCGYC 3 cut(s) 56, 74, 288
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 3 cut(s) 135, 400, 972
Bsc4I CCNNNNNNNGG 1 cut(s) 652
Bse3DI GCAATG 1 cut(s) 1023
BseDI CCNNGG 3 cut(s) 135, 400, 972
BseGI GGATG 1 cut(s) 793
BseLI CCNNNNNNNGG 1 cut(s) 652
BseMI GCAATG 1 cut(s) 1023
BseMII CTCAG 1 cut(s) 376
BseSI GKGCMC 3 cut(s) 8, 83, 688
BseXI GCAGC 6 cut(s) 33, 86, 649, 887, 890, 994
BsgI GTGCAG 2 cut(s) 648, 825
Bsh1236I CGCG 1 cut(s) 266
BshFI GGCC 4 cut(s) 200, 272, 860, 971
BshNI GGYRCC 2 cut(s) 489, 1030
BsiHKAI GWGCWC 2 cut(s) 71, 83
BsiHKCI CYCGRG 2 cut(s) 371, 896
BsiSI CCGG 1 cut(s) 1034
BslFI GGGAC 2 cut(s) 537, 616
BslI CCNNNNNNNGG 1 cut(s) 652
BsmAI GTCTC 4 cut(s) 80, 443, 446, 1019
BsmFI GGGAC 2 cut(s) 537, 616
BsnI GGCC 4 cut(s) 200, 272, 860, 971
Bso31I GGTCTC 1 cut(s) 80
BsoBI CYCGRG 2 cut(s) 371, 896
Bsp119I TTCGAA 1 cut(s) 827
Bsp1286I GDGCHC 4 cut(s) 8, 71, 83, 688
Bsp143I GATC 5 cut(s) 114, 147, 319, 625, 883
BspACI CCGC 5 cut(s) 19, 44, 120, 186, 1028
BspANI GGCC 4 cut(s) 200, 272, 860, 971
BspCNI CTCAG 1 cut(s) 375
BspFNI CGCG 1 cut(s) 266
BspLI GGNNCC 5 cut(s) 491, 525, 526, 750, 1032
BspPI GGATC 2 cut(s) 155, 327
BspQI GCTCTTC 1 cut(s) 801
BspT104I TTCGAA 1 cut(s) 827
BspT107I GGYRCC 2 cut(s) 489, 1030
BspTI CTTAAG 1 cut(s) 1042
BspTNI GGTCTC 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 1023
BssECI CCNNGG 3 cut(s) 135, 400, 972
BssMI GATC 5 cut(s) 114, 147, 319, 625, 883
BssNI GRCGYC 3 cut(s) 56, 74, 288
BssSI CACGAG 1 cut(s) 104
BssT1I CCWWGG 2 cut(s) 135, 972
Bst2BI CACGAG 1 cut(s) 104
Bst4CI ACNGT 2 cut(s) 221, 992
Bst6I CTCTTC 1 cut(s) 801
BstACI GRCGYC 3 cut(s) 56, 74, 288
BstAFI CTTAAG 1 cut(s) 1042
BstBAI YACGTR 3 cut(s) 66, 195, 250
BstBI TTCGAA 1 cut(s) 827
BstC8I GCNNGC 5 cut(s) 270, 274, 660, 667, 873
BstDEI CTNAG 3 cut(s) 362, 445, 821
BstF5I GGATG 1 cut(s) 793
BstFNI CGCG 1 cut(s) 266
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 5 cut(s) 117, 150, 322, 628, 886
BstMAI GTCTC 4 cut(s) 80, 443, 446, 1019
BstMBI GATC 5 cut(s) 114, 147, 319, 625, 883
BstMWI GCNNNNNNNGC 3 cut(s) 49, 817, 910
BstNSI RCATGY 1 cut(s) 412
BstSFI CTRYAG 1 cut(s) 540
BstSLI GKGCMC 3 cut(s) 8, 83, 688
BstUI CGCG 1 cut(s) 266
BstV1I GCAGC 6 cut(s) 33, 86, 649, 887, 890, 994
BstV2I GAAGAC 1 cut(s) 744
BstXI CCANNNNNNTGG 1 cut(s) 142
BsuRI GGCC 4 cut(s) 200, 272, 860, 971
BtgZI GCGATG 1 cut(s) 247
BtsCI GGATG 1 cut(s) 793
BtsIMutI CAGTG 2 cut(s) 282, 988
Cac8I GCNNGC 5 cut(s) 270, 274, 660, 667, 873
CfoI GCGC 1 cut(s) 268
Cfr13I GGNCC 7 cut(s) 16, 198, 346, 380, 524, 698, 859
CseI GACGC 3 cut(s) 64, 217, 319
Csp6I GTAC 3 cut(s) 157, 190, 548
CviAII CATG 3 cut(s) 142, 409, 802
CviQI GTAC 3 cut(s) 157, 190, 548
DdeI CTNAG 3 cut(s) 362, 445, 821
DpnI GATC 5 cut(s) 116, 149, 321, 627, 885
DpnII GATC 5 cut(s) 114, 147, 319, 625, 883
DraIII CACNNNGTG 1 cut(s) 652
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 801
EarI CTCTTC 1 cut(s) 801
Eco130I CCWWGG 2 cut(s) 135, 972
Eco31I GGTCTC 1 cut(s) 80
Eco47I GGWCC 5 cut(s) 16, 346, 380, 524, 698
Eco57I CTGAAG 1 cut(s) 415
Eco72I CACGTG 2 cut(s) 66, 195
Eco88I CYCGRG 2 cut(s) 371, 896
EcoO109I RGGNCCY 1 cut(s) 524
EcoT14I CCWWGG 2 cut(s) 135, 972
ErhI CCWWGG 2 cut(s) 135, 972
FaeI CATG 3 cut(s) 145, 412, 805
FalI AAGNNNNNCTT 2 cut(s) 642, 674
FaqI GGGAC 2 cut(s) 537, 616
FatI CATG 3 cut(s) 141, 408, 801
FauI CCCGC 1 cut(s) 179
FbaI TGATCA 1 cut(s) 625
Fnu4HI GCNGC 8 cut(s) 22, 44, 100, 121, 663, 876, 879, 983
FokI GGATG 1 cut(s) 800
Fsp4HI GCNGC 8 cut(s) 22, 44, 100, 121, 663, 876, 879, 983
GlaI GCGC 1 cut(s) 267
GluI GCNGC 8 cut(s) 22, 44, 100, 121, 663, 876, 879, 983
HaeIII GGCC 4 cut(s) 200, 272, 860, 971
HapII CCGG 1 cut(s) 1034
HgaI GACGC 3 cut(s) 64, 217, 319
HhaI GCGC 1 cut(s) 268
Hin1I GRCGYC 3 cut(s) 56, 74, 288
Hin1II CATG 3 cut(s) 145, 412, 805
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HpaII CCGG 1 cut(s) 1034
HphI GGTGA 2 cut(s) 124, 663
Hpy166II GTNNAC 2 cut(s) 81, 192
Hpy188I TCNGA 4 cut(s) 169, 324, 434, 457
Hpy188III TCNNGA 6 cut(s) 112, 364, 373, 629, 896, 898
Hpy8I GTNNAC 2 cut(s) 81, 192
Hpy99I CGWCG 7 cut(s) 52, 58, 76, 79, 185, 221, 233
HpyAV CCTTC 2 cut(s) 272, 564
HpyCH4III ACNGT 2 cut(s) 221, 992
HpyCH4IV ACGT 7 cut(s) 65, 74, 180, 194, 249, 288, 424
HpyCH4V TGCA 4 cut(s) 81, 665, 726, 842
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 817, 910
HpyF3I CTNAG 3 cut(s) 362, 445, 821
HpySE526I ACGT 7 cut(s) 65, 74, 180, 194, 249, 288, 424
Hsp92I GRCGYC 3 cut(s) 56, 74, 288
Hsp92II CATG 3 cut(s) 145, 412, 805
HspAI GCGC 1 cut(s) 266
KflI GGGWCCC 1 cut(s) 524
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 5 cut(s) 114, 147, 319, 625, 883
LguI GCTCTTC 1 cut(s) 801
LmnI GCTCC 2 cut(s) 169, 754
Lsp1109I GCAGC 6 cut(s) 33, 86, 649, 887, 890, 994
LweI GCATC 2 cut(s) 778, 994
MaeII ACGT 7 cut(s) 65, 74, 180, 194, 249, 288, 424
MaeIII GTNAC 1 cut(s) 765
MalI GATC 5 cut(s) 116, 149, 321, 627, 885
MboI GATC 5 cut(s) 114, 147, 319, 625, 883
MboII GAAGA 4 cut(s) 421, 447, 749, 818
MhlI GDGCHC 4 cut(s) 8, 71, 83, 688
MlsI TGGCCA 1 cut(s) 272
MluCI AATT 3 cut(s) 244, 829, 1019
MluNI TGGCCA 1 cut(s) 272
MmeI TCCRAC 2 cut(s) 147, 1021
Mox20I TGGCCA 1 cut(s) 272
MroXI GAANNNNTTC 1 cut(s) 810
MscI TGGCCA 1 cut(s) 272
MseI TTAA 5 cut(s) 393, 465, 759, 1002, 1043
MslI CAYNNNNRTG 1 cut(s) 1028
Msp20I TGGCCA 1 cut(s) 272
MspA1I CMGCKG 1 cut(s) 120
MspCI CTTAAG 1 cut(s) 1042
MspI CCGG 1 cut(s) 1034
MvnI CGCG 1 cut(s) 266
MwoI GCNNNNNNNGC 3 cut(s) 49, 817, 910
NdeII GATC 5 cut(s) 114, 147, 319, 625, 883
NlaIII CATG 3 cut(s) 145, 412, 805
NlaIV GGNNCC 5 cut(s) 491, 525, 526, 750, 1032
NspI RCATGY 1 cut(s) 412
NspV TTCGAA 1 cut(s) 827
PaeR7I CTCGAG 2 cut(s) 371, 896
PciSI GCTCTTC 1 cut(s) 801
PcsI WCGNNNNNNNCGW 5 cut(s) 56, 62, 71, 225, 246
PdmI GAANNNNTTC 1 cut(s) 810
PflMI CCANNNNNTGG 1 cut(s) 652
PkrI GCNGC 8 cut(s) 23, 45, 101, 122, 664, 877, 880, 984
PmaCI CACGTG 2 cut(s) 66, 195
PmlI CACGTG 2 cut(s) 66, 195
Ppu21I YACGTR 3 cut(s) 66, 195, 250
PpuMI RGGWCCY 1 cut(s) 524
PsiI TTATAA 1 cut(s) 420
Psp1406I AACGTT 1 cut(s) 424
Psp5II RGGWCCY 1 cut(s) 524
PspCI CACGTG 2 cut(s) 66, 195
PspN4I GGNNCC 5 cut(s) 491, 525, 526, 750, 1032
PspPI GGNCC 7 cut(s) 16, 198, 346, 380, 524, 698, 859
PspPPI RGGWCCY 1 cut(s) 524
RsaI GTAC 3 cut(s) 158, 191, 549
RsaNI GTAC 3 cut(s) 157, 190, 548
RseI CAYNNNNRTG 1 cut(s) 1028
SapI GCTCTTC 1 cut(s) 801
SaqAI TTAA 5 cut(s) 393, 465, 759, 1002, 1043
SatI GCNGC 8 cut(s) 22, 44, 100, 121, 663, 876, 879, 983
Sau3AI GATC 5 cut(s) 114, 147, 319, 625, 883
Sau96I GGNCC 7 cut(s) 16, 198, 346, 380, 524, 698, 859
SduI GDGCHC 4 cut(s) 8, 71, 83, 688
SfaNI GCATC 2 cut(s) 778, 994
SfcI CTRYAG 1 cut(s) 540
Sfr274I CTCGAG 2 cut(s) 371, 896
SfuI TTCGAA 1 cut(s) 827
SinI GGWCC 5 cut(s) 16, 346, 380, 524, 698
SlaI CTCGAG 2 cut(s) 371, 896
SmiMI CAYNNNNRTG 1 cut(s) 1028
SmlI CTYRAG 3 cut(s) 371, 896, 1042
SmoI CTYRAG 3 cut(s) 371, 896, 1042
Sse9I AATT 3 cut(s) 244, 829, 1019
SsiI CCGC 5 cut(s) 19, 44, 120, 186, 1028
StyI CCWWGG 2 cut(s) 135, 972
TaaI ACNGT 2 cut(s) 221, 992
TaiI ACGT 7 cut(s) 68, 77, 183, 197, 252, 291, 427
TaqI TCGA 6 cut(s) 71, 231, 372, 744, 827, 897
TasI AATT 3 cut(s) 244, 829, 1019
TatI WGTACW 1 cut(s) 156
TauI GCSGC 2 cut(s) 46, 123
Tru1I TTAA 5 cut(s) 393, 465, 759, 1002, 1043
Tru9I TTAA 5 cut(s) 393, 465, 759, 1002, 1043
TscAI CASTG 2 cut(s) 289, 995
TseI GCWGC 6 cut(s) 21, 99, 662, 875, 878, 982
TspDTI ATGAA 3 cut(s) 250, 766, 1012
TspGWI ACGGA 1 cut(s) 533
TspRI CASTG 2 cut(s) 289, 995
Van91I CCANNNNNTGG 1 cut(s) 652
Vha464I CTTAAG 1 cut(s) 1042
VneI GTGCAC 1 cut(s) 79
VpaK11BI GGWCC 5 cut(s) 16, 346, 380, 524, 698
XapI RAATTY 1 cut(s) 1019
XceI RCATGY 1 cut(s) 412
XcmI CCANNNNNNNNNTGG 1 cut(s) 952
XhoI CTCGAG 2 cut(s) 371, 896
XmnI GAANNNNTTC 1 cut(s) 810
ZraI GACGTC 2 cut(s) 75, 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.