Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002184

Physical Location & Seq

Genomic Coordinates Reverse (-)

51468641 .. 51474492

Gene Structure 5852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG217300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGGCACAATCAAGGTCGGCAGCGACAAATCAAAACCCTCGCCGCCGCCGCAGCCCACGCCGACCACGTGCTCGACGTCCTGCACCGAAACCATCAATGGCTGCCACGAGTTCAAGATCAGCGGGTACTCGCTCACCAAGGGCATGGGGATCGGGAAGTACGTCGGCTCCGAGCAGTTCAACGTCGGCGGGTACACGTGGGCCATATACTTCTACCCCGACGGCAAGAGCGTCGAGGACAACGCCAATTACGTGTCGCTGTTCATCGCGTTGGCCAGCGAAGGCAGCGATGTGAGGGCTTTGTTCGAGCTGACGCTTCTGGACCAGAGCGAGAGGCAACGCCACAAGGTCCATAGCCATTTTCTCAGGAGGCTCGAGAGCGGCCCTTACACGCTTAAATACCGAGGAAGCATGTGGGGTTATAAACGTTTCTTCAGAAGAAGTCTTTTAGAGACATCAGACCATCTTAAAGATGATTGCCTCATAATAAAGTGCCGCGTTGGGGTTGTTAGGACAAATACGGAGGGACCCAAAACATACGCTATAGCAGTACCACCTTCCAACATGGGTCAGCATTTTGGTAAGCTTTTAGAAAGTGGAAAGGGGACGGATGTGAGTTTTGAAGTTGATCAGGAAGTATTTTCTGCACACAAAGTGGTGCTTGCTGCACGCTCACCTGTGTTCAGGGCACAACTGTTTGGTCCATTGAAAGATAAAAACTCTTGTTGCATAAAGGTTGAAGATATTGAGACTCCTGTTTTTAAGGTTTTACTTCACTTCATCTACTGGGACGCTTTACCAGACATGGAAGAGCTTCTGGGGCTAAGTTCAAATTGGGCTTCTGCACAGACTACACTTATGGCCCAACATCTGCTGGCGGCAGCAGATCGTTATGCCCTCGAGAGGCTCAAAGTGCTGTGTGAGGCTAAACTTTGTGAGAATGTAGCCATAAACAATGTTGCAACAACATTGGCCTTGGCAGAGCAGCATCACTGTTTCCAACTTAAAGCTGTATGTCTCAAATTCATTGCAGTGCCTGAAAACTTAAGAGGTAATTATTTTCTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0031668 GO:0033554 GO:0042221 GO:0042631 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071470 GO:0071472 GO:0071496 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

356

Amino Acids

39.77

Weight (kDa)

8.21

Isoelectric Point (pI)

30.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	36 - 167	1.5e-31	MATH domain
BTB	PF00651	193 - 314	1.2e-19	BTB/POZ domain
BACK_BPM_SPOP	PF24570	319 - 350	5.6e-14	BPM/SPOP, BACK domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06190 AT3G06190 AT3G06190 AT3G06190 AT3G06190 AT5G19000 AT5G19000 AT5G19000
fragaria_vesca	FvH4_2g24040 FvH4_2g24040 FvH4_4g14240 FvH4_4g14240 FvH4_4g14240 FvH4_4g14240
malus_domestica	MD03G1269700.v1.1 MD11G1290500.v1.1 MD13G1181000.v1.1 MD16G1181700.v1.1
prunus_persica	Prupe.1G149100_v2.0.a1 Prupe.8G245800_v2.0.a1
pyrus_communis	pycom03g21500 pycom11g25780 pycom13g15620 pycom16g15250
rosa_chinensis	RchiOBHm_Chr4g0418941 RchiOBHm_Chr6g0291771
rosa_laevigata	RLG00000007840 RLG00000012086
rosa_multiflora	Rmu_sc0000935.1_g000060 Rmu_sc0002226.1_g000029 Rmu_sc0002713.1_g000011
rosa_roxburghii	Rroxscaffold_5G00362030 Rroxscaffold_7G00175770
rosa_rugosa	Rorug04G0155300 Rorug06G0221500
rosa_samantha	Rh4AG217300 Rh4BG213100 Rh6AG334300 Rh6BG341500 Rh6CG347500 Rh6DG334600
rosa_wichuraiana	Rw4G018570 Rw6G029100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	423
AatII	GACGTC	1 cut(s)	80
AccBSI	CCGCTC	1 cut(s)	381
AccII	CGCG	2 cut(s)	269, 498
AciI	CCGC	8 cut(s)	44, 47, 50, 123, 189, 381, 496, 878
AclI	AACGTT	1 cut(s)	427
AclWI	GGATC	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	1022
AcuI	CTGAAG	1 cut(s)	418
AcvI	CACGTG	2 cut(s)	69, 198
AcyI	GRCGYC	1 cut(s)	77
AdeI	CACNNNGTG	1 cut(s)	655
AfaI	GTAC	5 cut(s)	128, 161, 194, 552, 1067
AfiI	CCNNNNNNNGG	2 cut(s)	502, 903
AflII	CTTAAG	1 cut(s)	1045
AflIII	ACRYGT	2 cut(s)	195, 252
AgsI	TTSAA	6 cut(s)	115, 181, 623, 709, 740, 831
AluBI	AGCT	4 cut(s)	310, 586, 814, 1010
AluI	AGCT	4 cut(s)	310, 586, 814, 1010
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	3 cut(s)	446, 743, 1022
AlwI	GGATC	1 cut(s)	158
AlwNI	CAGNNNCTG	1 cut(s)	1037
Ama87I	CYCGRG	2 cut(s)	374, 899
AoxI	GGCC	5 cut(s)	201, 273, 382, 861, 972
ApeKI	GCWGC	7 cut(s)	21, 52, 102, 285, 665, 881, 985
ApoI	RAATTY	1 cut(s)	1022
Asp700I	GAANNNNTTC	1 cut(s)	813
AspS9I	GGNCC	7 cut(s)	201, 322, 349, 383, 527, 701, 862
AsuHPI	GGTGA	2 cut(s)	127, 666
AvaI	CYCGRG	2 cut(s)	374, 899
AvaII	GGWCC	4 cut(s)	322, 349, 527, 701
BaeGI	GKGCMC	2 cut(s)	8, 691
BalI	TGGCCA	1 cut(s)	275
BauI	CACGAG	1 cut(s)	107
BbrPI	CACGTG	2 cut(s)	69, 198
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	7 cut(s)	33, 64, 89, 297, 652, 893, 997
BccI	CCATC	2 cut(s)	101, 471
BceAI	ACGGC	1 cut(s)	238
BcgI	CGANNNNNNTGC	4 cut(s)	133, 167, 214, 248
BclI	TGATCA	1 cut(s)	628
BcoDI	GTCTC	3 cut(s)	446, 743, 1022
BfmI	CTRYAG	1 cut(s)	543
BfrI	CTTAAG	1 cut(s)	1045
Bme18I	GGWCC	4 cut(s)	322, 349, 527, 701
BmeT110I	CYCGRG	2 cut(s)	374, 899
BmgT120I	GGNCC	7 cut(s)	201, 322, 349, 383, 527, 701, 862
BmiI	GGNNCC	3 cut(s)	169, 528, 529
BmrI	ACTGGG	1 cut(s)	796
BmsI	GCATC	1 cut(s)	997
BmuI	ACTGGG	1 cut(s)	796
BsaAI	YACGTR	3 cut(s)	69, 198, 253
BsaHI	GRCGYC	1 cut(s)	77
BsaJI	CCNNGG	3 cut(s)	138, 403, 975
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	2 cut(s)	502, 903
Bse1I	ACTGG	1 cut(s)	791
Bse3DI	GCAATG	1 cut(s)	1026
BseDI	CCNNGG	3 cut(s)	138, 403, 975
BseGI	GGATG	1 cut(s)	616
BseLI	CCNNNNNNNGG	2 cut(s)	502, 903
BseMI	GCAATG	1 cut(s)	1026
BseMII	CTCAG	1 cut(s)	379
BseNI	ACTGG	1 cut(s)	791
BseSI	GKGCMC	2 cut(s)	8, 691
BseXI	GCAGC	7 cut(s)	33, 64, 89, 297, 652, 893, 997
BsgI	GTGCAG	4 cut(s)	67, 630, 651, 828
Bsh1236I	CGCG	2 cut(s)	269, 498
BshFI	GGCC	5 cut(s)	203, 275, 384, 863, 974
BsiHKAI	GWGCWC	1 cut(s)	74
BsiHKCI	CYCGRG	2 cut(s)	374, 899
BslFI	GGGAC	3 cut(s)	540, 619, 803
BslI	CCNNNNNNNGG	2 cut(s)	502, 903
BsmAI	GTCTC	3 cut(s)	446, 743, 1022
BsmFI	GGGAC	3 cut(s)	540, 619, 803
BsnI	GGCC	5 cut(s)	203, 275, 384, 863, 974
BsoBI	CYCGRG	2 cut(s)	374, 899
Bsp1286I	GDGCHC	3 cut(s)	8, 74, 691
Bsp143I	GATC	4 cut(s)	117, 150, 628, 886
BspACI	CCGC	8 cut(s)	44, 47, 50, 123, 189, 381, 496, 878
BspANI	GGCC	5 cut(s)	203, 275, 384, 863, 974
BspCNI	CTCAG	1 cut(s)	378
BspFNI	CGCG	2 cut(s)	269, 498
BspLI	GGNNCC	3 cut(s)	169, 528, 529
BspPI	GGATC	1 cut(s)	158
BspQI	GCTCTTC	1 cut(s)	804
BspTI	CTTAAG	1 cut(s)	1045
BsrBI	CCGCTC	1 cut(s)	381
BsrDI	GCAATG	1 cut(s)	1026
BsrI	ACTGG	1 cut(s)	791
BssECI	CCNNGG	3 cut(s)	138, 403, 975
BssMI	GATC	4 cut(s)	117, 150, 628, 886
BssNI	GRCGYC	1 cut(s)	77
BssSI	CACGAG	1 cut(s)	107
BssT1I	CCWWGG	2 cut(s)	138, 975
Bst2BI	CACGAG	1 cut(s)	107
Bst4CI	ACNGT	2 cut(s)	696, 995
Bst6I	CTCTTC	1 cut(s)	804
BstACI	GRCGYC	1 cut(s)	77
BstAFI	CTTAAG	1 cut(s)	1045
BstBAI	YACGTR	3 cut(s)	69, 198, 253
BstC8I	GCNNGC	4 cut(s)	277, 663, 670, 876
BstDEI	CTNAG	2 cut(s)	365, 824
BstF5I	GGATG	1 cut(s)	616
BstFNI	CGCG	2 cut(s)	269, 498
BstKTI	GATC	4 cut(s)	120, 153, 631, 889
BstMAI	GTCTC	3 cut(s)	446, 743, 1022
BstMBI	GATC	4 cut(s)	117, 150, 628, 886
BstMWI	GCNNNNNNNGC	6 cut(s)	49, 52, 58, 285, 820, 913
BstNSI	RCATGY	1 cut(s)	415
BstSFI	CTRYAG	1 cut(s)	543
BstSLI	GKGCMC	2 cut(s)	8, 691
BstUI	CGCG	2 cut(s)	269, 498
BstV1I	GCAGC	7 cut(s)	33, 64, 89, 297, 652, 893, 997
BstXI	CCANNNNNNTGG	1 cut(s)	145
BsuRI	GGCC	5 cut(s)	203, 275, 384, 863, 974
BtgZI	GCGATG	2 cut(s)	250, 303
BtsCI	GGATG	1 cut(s)	616
BtsI	GCAGTG	1 cut(s)	1038
BtsIMutI	CAGTG	2 cut(s)	991, 1038
Cac8I	GCNNGC	4 cut(s)	277, 663, 670, 876
CaiI	CAGNNNCTG	1 cut(s)	1037
Cfr13I	GGNCC	7 cut(s)	201, 322, 349, 383, 527, 701, 862
CseI	GACGC	3 cut(s)	220, 322, 800
Csp6I	GTAC	5 cut(s)	127, 160, 193, 551, 1066
CviAII	CATG	4 cut(s)	145, 412, 565, 805
CviQI	GTAC	5 cut(s)	127, 160, 193, 551, 1066
DdeI	CTNAG	2 cut(s)	365, 824
DpnI	GATC	4 cut(s)	119, 152, 630, 888
DpnII	GATC	4 cut(s)	117, 150, 628, 886
DraIII	CACNNNGTG	1 cut(s)	655
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	804
EarI	CTCTTC	1 cut(s)	804
Eco130I	CCWWGG	2 cut(s)	138, 975
Eco47I	GGWCC	4 cut(s)	322, 349, 527, 701
Eco57I	CTGAAG	1 cut(s)	418
Eco72I	CACGTG	2 cut(s)	69, 198
Eco88I	CYCGRG	2 cut(s)	374, 899
EcoO109I	RGGNCCY	1 cut(s)	527
EcoT14I	CCWWGG	2 cut(s)	138, 975
ErhI	CCWWGG	2 cut(s)	138, 975
FaeI	CATG	4 cut(s)	148, 415, 568, 808
FalI	AAGNNNNNCTT	2 cut(s)	645, 677
FaqI	GGGAC	3 cut(s)	540, 619, 803
FatI	CATG	4 cut(s)	144, 411, 564, 804
FauI	CCCGC	2 cut(s)	116, 182
FbaI	TGATCA	1 cut(s)	628
FokI	GGATG	1 cut(s)	623
HaeIII	GGCC	5 cut(s)	203, 275, 384, 863, 974
HgaI	GACGC	3 cut(s)	220, 322, 800
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	4 cut(s)	148, 415, 568, 808
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	1 cut(s)	751
HphI	GGTGA	2 cut(s)	127, 666
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	3 cut(s)	172, 437, 460
Hpy188III	TCNNGA	7 cut(s)	115, 154, 320, 367, 376, 632, 901
Hpy8I	GTNNAC	1 cut(s)	195
Hpy99I	CGWCG	5 cut(s)	79, 167, 188, 224, 236
HpyAV	CCTTC	2 cut(s)	275, 567
HpyCH4III	ACNGT	2 cut(s)	696, 995
HpyCH4IV	ACGT	7 cut(s)	68, 77, 162, 183, 197, 252, 427
HpyCH4V	TGCA	7 cut(s)	84, 647, 668, 729, 845, 962, 1031
HpyF10VI	GCNNNNNNNGC	6 cut(s)	49, 52, 58, 285, 820, 913
HpyF3I	CTNAG	2 cut(s)	365, 824
HpySE526I	ACGT	7 cut(s)	68, 77, 162, 183, 197, 252, 427
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	4 cut(s)	148, 415, 568, 808
KflI	GGGWCCC	1 cut(s)	527
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	4 cut(s)	117, 150, 628, 886
LguI	GCTCTTC	1 cut(s)	804
LmnI	GCTCC	1 cut(s)	173
Lsp1109I	GCAGC	7 cut(s)	33, 64, 89, 297, 652, 893, 997
LweI	GCATC	1 cut(s)	997
MaeII	ACGT	7 cut(s)	68, 77, 162, 183, 197, 252, 427
MalI	GATC	4 cut(s)	119, 152, 630, 888
MbiI	CCGCTC	1 cut(s)	381
MboI	GATC	4 cut(s)	117, 150, 628, 886
MboII	GAAGA	4 cut(s)	424, 450, 752, 821
MhlI	GDGCHC	3 cut(s)	8, 74, 691
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	4 cut(s)	247, 832, 1022, 1054
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	745
MmeI	TCCRAC	2 cut(s)	585, 1024
Mox20I	TGGCCA	1 cut(s)	275
MroXI	GAANNNNTTC	1 cut(s)	813
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	5 cut(s)	396, 468, 762, 1005, 1046
MslI	CAYNNNNRTG	1 cut(s)	1031
Msp20I	TGGCCA	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	123
MspCI	CTTAAG	1 cut(s)	1045
MvnI	CGCG	2 cut(s)	269, 498
MwoI	GCNNNNNNNGC	6 cut(s)	49, 52, 58, 285, 820, 913
NdeII	GATC	4 cut(s)	117, 150, 628, 886
NlaIII	CATG	4 cut(s)	148, 415, 568, 808
NlaIV	GGNNCC	3 cut(s)	169, 528, 529
NspI	RCATGY	1 cut(s)	415
PaeR7I	CTCGAG	2 cut(s)	374, 899
PciSI	GCTCTTC	1 cut(s)	804
PcsI	WCGNNNNNNNCGW	6 cut(s)	65, 74, 159, 168, 228, 249
PdmI	GAANNNNTTC	1 cut(s)	813
PleI	GAGTC	1 cut(s)	745
PmaCI	CACGTG	2 cut(s)	69, 198
PmlI	CACGTG	2 cut(s)	69, 198
PpsI	GAGTC	1 cut(s)	745
Ppu21I	YACGTR	3 cut(s)	69, 198, 253
PpuMI	RGGWCCY	1 cut(s)	527
PsiI	TTATAA	1 cut(s)	423
Psp1406I	AACGTT	1 cut(s)	427
Psp5II	RGGWCCY	1 cut(s)	527
PspCI	CACGTG	2 cut(s)	69, 198
PspN4I	GGNNCC	3 cut(s)	169, 528, 529
PspPI	GGNCC	7 cut(s)	201, 322, 349, 383, 527, 701, 862
PspPPI	RGGWCCY	1 cut(s)	527
PstNI	CAGNNNCTG	1 cut(s)	1037
RsaI	GTAC	5 cut(s)	128, 161, 194, 552, 1067
RsaNI	GTAC	5 cut(s)	127, 160, 193, 551, 1066
RseI	CAYNNNNRTG	1 cut(s)	1031
SapI	GCTCTTC	1 cut(s)	804
SaqAI	TTAA	5 cut(s)	396, 468, 762, 1005, 1046
Sau3AI	GATC	4 cut(s)	117, 150, 628, 886
Sau96I	GGNCC	7 cut(s)	201, 322, 349, 383, 527, 701, 862
SchI	GAGTC	1 cut(s)	745
SduI	GDGCHC	3 cut(s)	8, 74, 691
SfaNI	GCATC	1 cut(s)	997
SfcI	CTRYAG	1 cut(s)	543
Sfr274I	CTCGAG	2 cut(s)	374, 899
SinI	GGWCC	4 cut(s)	322, 349, 527, 701
SlaI	CTCGAG	2 cut(s)	374, 899
SmiMI	CAYNNNNRTG	1 cut(s)	1031
SmlI	CTYRAG	3 cut(s)	374, 899, 1045
SmoI	CTYRAG	3 cut(s)	374, 899, 1045
Sse9I	AATT	4 cut(s)	247, 832, 1022, 1054
SsiI	CCGC	8 cut(s)	44, 47, 50, 123, 189, 381, 496, 878
StyI	CCWWGG	2 cut(s)	138, 975
TaaI	ACNGT	2 cut(s)	696, 995
TaiI	ACGT	7 cut(s)	71, 80, 165, 186, 200, 255, 430
TaqI	TCGA	5 cut(s)	74, 234, 306, 375, 900
TasI	AATT	4 cut(s)	247, 832, 1022, 1054
TatI	WGTACW	1 cut(s)	1065
TauI	GCSGC	6 cut(s)	46, 49, 52, 384, 498, 881
Tru1I	TTAA	5 cut(s)	396, 468, 762, 1005, 1046
Tru9I	TTAA	5 cut(s)	396, 468, 762, 1005, 1046
TscAI	CASTG	2 cut(s)	998, 1038
TseI	GCWGC	7 cut(s)	21, 52, 102, 285, 665, 881, 985
TspDTI	ATGAA	3 cut(s)	253, 769, 1015
TspGWI	ACGGA	2 cut(s)	536, 623
TspRI	CASTG	2 cut(s)	998, 1038
Vha464I	CTTAAG	1 cut(s)	1045
VpaK11BI	GGWCC	4 cut(s)	322, 349, 527, 701
XapI	RAATTY	1 cut(s)	1022
XceI	RCATGY	1 cut(s)	415
XhoI	CTCGAG	2 cut(s)	374, 899
XmnI	GAANNNNTTC	1 cut(s)	813
ZraI	GACGTC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.