Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002184

Physical Location & Seq

Genomic Coordinates Forward (+)

6342220 .. 6344993

Gene Structure 2774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G19000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGGCACAACTAGGGTCTGCTCGGAGGTTTCTTCTGGATCTTCGAAATCGCTTAGCCAATCTCTCACGGTATCGACCTCTACCACAGAAACAGTCAATGGTTTCCATGAATTCAAGATCTGTGGGTACTCTCTCGCTAAAGGTGTTGGTGTCGGCAAATACGTCGCTTCCGATACGTTTATGGTCGGTGGTTACTCGTGGGCAATCTACTTTTATCCAGATGGGAAGAGTCCGGAGGATAACTCGTCTTACGTTTCTTTGTTCATAGCTCTTGCTAGCGAAGGAGCTGATGTTAGGGCTTTGTTTGAGCTCACGCTTGTGGATCAGAGTGGTAATGGGAAGCATAAGGTTCATAGCCATTTTGGTAGAGCTCTCGATAGCGGTCCCTATACTCTCAAGTATCGTGGAAGCATGTGGGGATACAAGCGGTTTTTCAGGAGGTCCAGTCTAGAATCGTCGGATTATTTGAAGGAGAATAGTCTCTTGGTTAGGTGCCGTGTGGGTGTGGTGAAGTCAGTTACGGAGGGACCGAGGTATTACAATATCCCTGTGCCAGTTTCTAACTTGGGACAACAGTTGGGAAATTTATTGGAGAGTGGGAAAGGCTGTGATGTTGTTTTCCAAGTTGATGGAGAAACCTTCAACGCACACAAATTGGTTCTTGCAACGCGTTCCCCGGTTTTCAACGCACAGCTTTTTGGCCCTTTAGGAGACCGAAATACCAAATGCATAACGATAGAAGACATGGAAGCACCCATTTTCAAGGTATTGCTCCATTTTATCTACTGGGACGAATTGCCTGATATGCAAGAGTTAATAGGAACAGACTCTACATTGGCGTCTACTCTTGTGGCTCAGCATCTACTAGCAGCGGCAGACCGTTATGCTCTTGAGCGGCTTAAAGCAATCTGTGAGTCAAAACTCTGTGAAGGGGTTGCCATAAACACGGTTGCAACTACTTTGGCCCTAGCAGAGCAGCATCATTGTTTGCAGCTAAAAGCAGTGTGTCTCAAATTCGTGGCACTGCCAGAGAACCTGAAAGCTGTGATGCAAACAGATGGGTTTGATTATCTGAAAGAGAGTTGCCCATCTTTACTAACGGAGCTATTGCAGTATGTGGCGAGGCTAAGTGAACACTCTGTTATAGTATCTGGACATCGAAAAGAAATATTTGCCGATGGTTGTGACGCGAGTGGAAGACGAGTGAAGCCCCGGTTGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0031668 GO:0033554 GO:0042221 GO:0042631 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071470 GO:0071472 GO:0071496 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

407

Amino Acids

44.73

Weight (kDa)

6.86

Isoelectric Point (pI)

31.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	36 - 167	8.7e-29	MATH domain
BTB	PF00651	194 - 310	6.9e-22	BTB/POZ domain
BACK_BPM_SPOP	PF24570	316 - 370	8.4e-28	BPM/SPOP, BACK domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06190 AT3G06190 AT3G06190 AT3G06190 AT3G06190 AT5G19000 AT5G19000 AT5G19000
fragaria_vesca	FvH4_2g24040 FvH4_2g24040 FvH4_4g14240 FvH4_4g14240 FvH4_4g14240 FvH4_4g14240
malus_domestica	MD03G1269700.v1.1 MD11G1290500.v1.1 MD13G1181000.v1.1 MD16G1181700.v1.1
prunus_persica	Prupe.1G149100_v2.0.a1 Prupe.8G245800_v2.0.a1
pyrus_communis	pycom03g21500 pycom11g25780 pycom13g15620 pycom16g15250
rosa_chinensis	RchiOBHm_Chr4g0418941 RchiOBHm_Chr6g0291771
rosa_laevigata	RLG00000007840 RLG00000012086
rosa_multiflora	Rmu_sc0000935.1_g000060 Rmu_sc0002226.1_g000029 Rmu_sc0002713.1_g000011
rosa_roxburghii	Rroxscaffold_5G00362030 Rroxscaffold_7G00175770
rosa_rugosa	Rorug04G0155300 Rorug06G0221500
rosa_samantha	Rh4AG217300 Rh4BG213100 Rh6AG334300 Rh6BG341500 Rh6CG347500 Rh6DG334600
rosa_wichuraiana	Rw4G018570 Rw6G029100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	492
AccBSI	CCGCTC	1 cut(s)	895
AccI	GTMKAC	1 cut(s)	842
AccII	CGCG	2 cut(s)	670, 1190
AccIII	TCCGGA	1 cut(s)	232
AciI	CCGC	4 cut(s)	381, 427, 872, 895
AclWI	GGATC	2 cut(s)	46, 330
AcsI	RAATTY	3 cut(s)	110, 583, 1013
AcyI	GRCGYC	1 cut(s)	839
AfaI	GTAC	1 cut(s)	128
AflIII	ACRYGT	1 cut(s)	668
AgsI	TTSAA	5 cut(s)	115, 469, 643, 685, 763
AjuI	GAANNNNNNNTTGG	2 cut(s)	467, 499
AleI	CACNNNNGTG	1 cut(s)	317
AluBI	AGCT	8 cut(s)	269, 287, 310, 371, 694, 994, 1043, 1105
AluI	AGCT	8 cut(s)	269, 287, 310, 371, 694, 994, 1043, 1105
Alw21I	GWGCWC	2 cut(s)	312, 373
Alw26I	GTCTC	3 cut(s)	485, 705, 1013
AlwI	GGATC	2 cut(s)	46, 330
Aor13HI	TCCGGA	1 cut(s)	232
AoxI	GGCC	2 cut(s)	700, 963
ApeKI	GCWGC	3 cut(s)	869, 976, 991
ApoI	RAATTY	3 cut(s)	110, 583, 1013
AspS9I	GGNCC	5 cut(s)	383, 441, 527, 701, 964
AsuC2I	CCSGG	2 cut(s)	677, 1213
AsuHPI	GGTGA	1 cut(s)	520
AsuII	TTCGAA	1 cut(s)	44
AsuNHI	GCTAGC	1 cut(s)	275
AvaII	GGWCC	3 cut(s)	383, 441, 527
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	492
BanII	GRGCYC	2 cut(s)	312, 373
BauI	CACGAG	1 cut(s)	196
BbsI	GAAGAC	2 cut(s)	747, 1204
Bbv12I	GWGCWC	2 cut(s)	312, 373
BbvI	GCAGC	3 cut(s)	881, 988, 1003
BccI	CCATC	5 cut(s)	215, 623, 1052, 1096, 1172
BceAI	ACGGC	1 cut(s)	480
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciVI	GTATCC	1 cut(s)	413
BcnI	CCSGG	2 cut(s)	677, 1213
BcoDI	GTCTC	3 cut(s)	485, 705, 1013
BfaI	CTAG	5 cut(s)	12, 276, 449, 866, 968
BfuI	GTATCC	1 cut(s)	413
BglII	AGATCT	1 cut(s)	117
BisI	GCNGC	5 cut(s)	870, 873, 896, 977, 992
BlpI	GCTNAGC	2 cut(s)	53, 855
BlsI	GCNGC	5 cut(s)	871, 874, 897, 978, 993
Bme1390I	CCNGG	2 cut(s)	677, 1213
Bme18I	GGWCC	3 cut(s)	383, 441, 527
BmgT120I	GGNCC	5 cut(s)	383, 441, 527, 701, 964
BmiI	GGNNCC	3 cut(s)	385, 494, 528
BmrFI	CCNGG	2 cut(s)	677, 1213
BmrI	ACTGGG	1 cut(s)	796
BmsI	GCATC	3 cut(s)	868, 988, 1038
BmtI	GCTAGC	1 cut(s)	279
BmuI	ACTGGG	1 cut(s)	796
BpiI	GAAGAC	2 cut(s)	747, 1204
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
Bpu1102I	GCTNAGC	2 cut(s)	53, 855
Bpu14I	TTCGAA	1 cut(s)	44
BpuEI	CTTGAG	2 cut(s)	380, 911
BpuMI	CCSGG	2 cut(s)	677, 1213
BsaHI	GRCGYC	1 cut(s)	839
BsaI	GGTCTC	1 cut(s)	705
BsaJI	CCNNGG	3 cut(s)	530, 675, 1211
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	4 cut(s)	276, 306, 430, 460
Bse1I	ACTGG	3 cut(s)	444, 554, 791
BseAI	TCCGGA	1 cut(s)	232
BseDI	CCNNGG	3 cut(s)	530, 675, 1211
BseMII	CTCAG	1 cut(s)	869
BseNI	ACTGG	3 cut(s)	444, 554, 791
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	3 cut(s)	881, 988, 1003
Bsh1236I	CGCG	2 cut(s)	670, 1190
BshFI	GGCC	2 cut(s)	702, 965
BshNI	GGYRCC	1 cut(s)	492
BsiHKAI	GWGCWC	2 cut(s)	312, 373
BsiSI	CCGG	3 cut(s)	233, 677, 1213
BslFI	GGGAC	4 cut(s)	369, 540, 582, 803
BsmAI	GTCTC	3 cut(s)	485, 705, 1013
BsmFI	GGGAC	4 cut(s)	369, 540, 582, 803
BsnI	GGCC	2 cut(s)	702, 965
Bso31I	GGTCTC	1 cut(s)	705
Bsp119I	TTCGAA	1 cut(s)	44
Bsp1286I	GDGCHC	3 cut(s)	8, 312, 373
Bsp13I	TCCGGA	1 cut(s)	232
Bsp143I	GATC	3 cut(s)	38, 117, 322
Bsp1720I	GCTNAGC	2 cut(s)	53, 855
BspACI	CCGC	4 cut(s)	381, 427, 872, 895
BspANI	GGCC	2 cut(s)	702, 965
BspCNI	CTCAG	1 cut(s)	868
BspEI	TCCGGA	1 cut(s)	232
BspFNI	CGCG	2 cut(s)	670, 1190
BspLI	GGNNCC	3 cut(s)	385, 494, 528
BspOI	GCTAGC	1 cut(s)	279
BspPI	GGATC	2 cut(s)	46, 330
BspT104I	TTCGAA	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	492
BspTNI	GGTCTC	1 cut(s)	705
BsrBI	CCGCTC	1 cut(s)	895
BsrI	ACTGG	3 cut(s)	444, 554, 791
BssECI	CCNNGG	3 cut(s)	530, 675, 1211
BssMI	GATC	3 cut(s)	38, 117, 322
BssNI	GRCGYC	1 cut(s)	839
BssSI	CACGAG	1 cut(s)	196
Bst2BI	CACGAG	1 cut(s)	196
Bst4CI	ACNGT	5 cut(s)	70, 94, 576, 881, 949
Bst6I	CTCTTC	1 cut(s)	221
BstACI	GRCGYC	1 cut(s)	839
BstBI	TTCGAA	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	3 cut(s)	53, 855, 1127
BstFNI	CGCG	2 cut(s)	670, 1190
BstKTI	GATC	3 cut(s)	41, 120, 325
BstMAI	GTCTC	3 cut(s)	485, 705, 1013
BstMBI	GATC	3 cut(s)	38, 117, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	805, 1216
BstNSI	RCATGY	1 cut(s)	415
BstSCI	CCNGG	2 cut(s)	675, 1211
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	2 cut(s)	670, 1190
BstV1I	GCAGC	3 cut(s)	881, 988, 1003
BstV2I	GAAGAC	2 cut(s)	747, 1204
BstX2I	RGATCY	2 cut(s)	38, 117
BstXI	CCANNNNNNTGG	1 cut(s)	629
BstYI	RGATCY	2 cut(s)	38, 117
BsuI	GTATCC	1 cut(s)	413
BsuRI	GGCC	2 cut(s)	702, 965
BtsI	GCAGTG	2 cut(s)	1008, 1022
BtsIMutI	CAGTG	3 cut(s)	1008, 1022, 1219
Cac8I	GCNNGC	1 cut(s)	277
Cfr13I	GGNCC	5 cut(s)	383, 441, 527, 701, 964
CseI	GACGC	2 cut(s)	828, 1196
Csp6I	GTAC	1 cut(s)	127
CspCI	CAANNNNNGTGG	4 cut(s)	103, 138, 385, 420
CviAII	CATG	3 cut(s)	107, 412, 745
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	3 cut(s)	53, 855, 1127
DpnI	GATC	3 cut(s)	40, 119, 324
DpnII	GATC	3 cut(s)	38, 117, 322
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Ecl136II	GAGCTC	2 cut(s)	310, 371
Eco24I	GRGCYC	2 cut(s)	312, 373
Eco31I	GGTCTC	1 cut(s)	705
Eco47I	GGWCC	3 cut(s)	383, 441, 527
Eco53kI	GAGCTC	2 cut(s)	310, 371
EcoICRI	GAGCTC	2 cut(s)	310, 371
EcoRI	GAATTC	1 cut(s)	110
EcoT22I	ATGCAT	1 cut(s)	731
EcoT38I	GRGCYC	2 cut(s)	312, 373
FaeI	CATG	3 cut(s)	110, 415, 748
FaqI	GGGAC	4 cut(s)	369, 540, 582, 803
FatI	CATG	3 cut(s)	106, 411, 744
FblI	GTMKAC	1 cut(s)	842
Fnu4HI	GCNGC	5 cut(s)	870, 873, 896, 977, 992
FriOI	GRGCYC	2 cut(s)	312, 373
Fsp4HI	GCNGC	5 cut(s)	870, 873, 896, 977, 992
FspBI	CTAG	5 cut(s)	12, 276, 449, 866, 968
GluI	GCNGC	5 cut(s)	870, 873, 896, 977, 992
HaeIII	GGCC	2 cut(s)	702, 965
HapII	CCGG	3 cut(s)	233, 677, 1213
HgaI	GACGC	2 cut(s)	828, 1196
Hin1I	GRCGYC	1 cut(s)	839
Hin1II	CATG	3 cut(s)	110, 415, 748
HinfI	GANTC	4 cut(s)	229, 452, 827, 914
HpaII	CCGG	3 cut(s)	233, 677, 1213
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	2 cut(s)	843, 1133
Hpy188I	TCNGA	5 cut(s)	25, 172, 327, 460, 1074
Hpy188III	TCNNGA	9 cut(s)	36, 115, 218, 233, 374, 436, 449, 890, 1152
Hpy8I	GTNNAC	2 cut(s)	843, 1133
Hpy99I	CGWCG	2 cut(s)	167, 460
HpyAV	CCTTC	4 cut(s)	275, 463, 649, 923
HpyCH4III	ACNGT	5 cut(s)	70, 94, 576, 881, 949
HpyCH4IV	ACGT	3 cut(s)	162, 176, 252
HpyCH4V	TGCA	8 cut(s)	665, 729, 808, 953, 991, 1051, 1111, 1219
HpyF10VI	GCNNNNNNNGC	2 cut(s)	805, 1216
HpyF3I	CTNAG	3 cut(s)	53, 855, 1127
HpySE526I	ACGT	3 cut(s)	162, 176, 252
Hsp92I	GRCGYC	1 cut(s)	839
Hsp92II	CATG	3 cut(s)	110, 415, 748
Kpn2I	TCCGGA	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	38, 117, 322
LmnI	GCTCC	3 cut(s)	284, 777, 1102
Lsp1109I	GCAGC	3 cut(s)	881, 988, 1003
LweI	GCATC	3 cut(s)	868, 988, 1038
MaeI	CTAG	5 cut(s)	12, 276, 449, 866, 968
MaeII	ACGT	3 cut(s)	162, 176, 252
MaeIII	GTNAC	3 cut(s)	191, 517, 1184
MalI	GATC	3 cut(s)	40, 119, 324
MbiI	CCGCTC	1 cut(s)	895
MboI	GATC	3 cut(s)	38, 117, 322
MboII	GAAGA	5 cut(s)	24, 33, 238, 752, 1209
MflI	RGATCY	2 cut(s)	38, 117
MhlI	GDGCHC	3 cut(s)	8, 312, 373
MluCI	AATT	5 cut(s)	110, 583, 653, 794, 1013
MluI	ACGCGT	1 cut(s)	668
MlyI	GAGTC	3 cut(s)	238, 821, 923
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	7 cut(s)	19, 88, 229, 432, 517, 525, 1116
Mph1103I	ATGCAT	1 cut(s)	731
MroI	TCCGGA	1 cut(s)	232
MseI	TTAA	2 cut(s)	815, 900
MslI	CAYNNNNRTG	1 cut(s)	317
MspA1I	CMGCKG	1 cut(s)	872
MspI	CCGG	3 cut(s)	233, 677, 1213
MspR9I	CCNGG	2 cut(s)	677, 1213
MvnI	CGCG	2 cut(s)	670, 1190
MwoI	GCNNNNNNNGC	2 cut(s)	805, 1216
NciI	CCSGG	2 cut(s)	677, 1213
NdeII	GATC	3 cut(s)	38, 117, 322
NheI	GCTAGC	1 cut(s)	275
NlaIII	CATG	3 cut(s)	110, 415, 748
NlaIV	GGNNCC	3 cut(s)	385, 494, 528
NmuCI	GTSAC	1 cut(s)	1184
NsiI	ATGCAT	1 cut(s)	731
NspI	RCATGY	1 cut(s)	415
NspV	TTCGAA	1 cut(s)	44
OliI	CACNNNNGTG	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	3 cut(s)	159, 168, 527
PfeI	GAWTC	1 cut(s)	452
PkrI	GCNGC	5 cut(s)	871, 874, 897, 978, 993
PleI	GAGTC	3 cut(s)	237, 821, 922
PpsI	GAGTC	3 cut(s)	237, 821, 922
Psp124BI	GAGCTC	2 cut(s)	312, 373
PspN4I	GGNNCC	3 cut(s)	385, 494, 528
PspPI	GGNCC	5 cut(s)	383, 441, 527, 701, 964
PsrI	GAACNNNNNNTAC	2 cut(s)	814, 846
PsuI	RGATCY	2 cut(s)	38, 117
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	317
SacI	GAGCTC	2 cut(s)	312, 373
SaqAI	TTAA	2 cut(s)	815, 900
SatI	GCNGC	5 cut(s)	870, 873, 896, 977, 992
Sau3AI	GATC	3 cut(s)	38, 117, 322
Sau96I	GGNCC	5 cut(s)	383, 441, 527, 701, 964
SchI	GAGTC	3 cut(s)	238, 821, 923
ScrFI	CCNGG	2 cut(s)	677, 1213
SduI	GDGCHC	3 cut(s)	8, 312, 373
SfaNI	GCATC	3 cut(s)	868, 988, 1038
SfuI	TTCGAA	1 cut(s)	44
SinI	GGWCC	3 cut(s)	383, 441, 527
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	2 cut(s)	395, 890
SmoI	CTYRAG	2 cut(s)	395, 890
Sse9I	AATT	5 cut(s)	110, 583, 653, 794, 1013
SsiI	CCGC	4 cut(s)	381, 427, 872, 895
SspI	AATATT	1 cut(s)	1170
SspMI	CTAG	5 cut(s)	12, 276, 449, 866, 968
SstI	GAGCTC	2 cut(s)	312, 373
StyD4I	CCNGG	2 cut(s)	675, 1211
TaaI	ACNGT	5 cut(s)	70, 94, 576, 881, 949
TaiI	ACGT	3 cut(s)	165, 179, 255
TaqI	TCGA	4 cut(s)	44, 74, 375, 1159
TaqII	GACCGA	2 cut(s)	544, 729
TasI	AATT	5 cut(s)	110, 583, 653, 794, 1013
TauI	GCSGC	2 cut(s)	875, 898
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	2 cut(s)	815, 900
Tru9I	TTAA	2 cut(s)	815, 900
TscAI	CASTG	2 cut(s)	1008, 1029
TseFI	GTSAC	1 cut(s)	1184
TseI	GCWGC	3 cut(s)	869, 976, 991
Tsp45I	GTSAC	1 cut(s)	1184
TspDTI	ATGAA	3 cut(s)	123, 253, 341
TspGWI	ACGGA	2 cut(s)	536, 1115
TspRI	CASTG	2 cut(s)	1008, 1029
VpaK11BI	GGWCC	3 cut(s)	383, 441, 527
XapI	RAATTY	3 cut(s)	110, 583, 1013
XbaI	TCTAGA	1 cut(s)	448
XceI	RCATGY	1 cut(s)	415
XmiI	GTMKAC	1 cut(s)	842
XspI	CTAG	5 cut(s)	12, 276, 449, 866, 968
Zsp2I	ATGCAT	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.