Rroxscaffold_5G00362030

BTB POZ and MATH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
42871439 .. 42877017
5579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00362030.1

Sequence Viewer

Length: 1233 bp
ATGGGCACAATCAAGGTCGGCAGCGACAAATCAAAACCCTCGCCGTCGCCGCAGCCCACACCGACCACGTGCTCGACGTCCTGCACCGAAACCATCAATGGCTGCCACGAGTTCAAGATCAGCGGGTACTCGCTCACCAAGGGCATGGGGATCGGGAAGTACGTCGGCTCCGAGCAGTTCAACGTCGGCGGGTACACGTGGGCCATATACTTCTACCCCGACGGCAAGAGCGTCGAGGACAACGCCAATTACGTGTCGCTGTTCATCGCGTTGGCTAGCGAAGGCAGCGATGTGAGGGCTTTGTTCGAGCTGACGCTTCTGGACCAGAGCGAGAGGCAACGCCACAAGGTCCATAGCCATTTTCTCAGGAGGCTCGAGAGTGGTCCTTACACGCTTAAATACCGAGGAAGCATGTGGGGTTATAAACGTTTCTTCAGAAGAAGTCTTTTAGAGACATCAGACCATCTTAAAGATGATTGCCTCATAATAAAGTGCCGCGTTGGGGTTGTTAGGACAAATACGGAGGGACCCAAAACATACGCTATAGCAGTACCACCTTCCAACATGGGTCAGCATTTTGGTAAGCTTTTAGAAAGTGGAAAGGGGACGGATGTGAGTTTTGAAGTTGATCAGGAAGTATTTTCTGCACACAAAGTGGTGCTTGCTGCACGCTCACCTGTGTTCAGGGCACAACTGTTTGGTCCATTGAAAGATAAAAACTCTTGTTGCATAAAGGTTGAAGACATTGAGGCTCCTGTTTTTAAGGTTTTACTTCACTTCATCTACTGGGATGCTTTACCAGACATGGAAGAGCTTCTGGGGCTAAGTTCAAATTGGGCTTCTGCACAGACTACACTTATGGCCCAACATCTGCTGGCGGCAGCAGATCGTTATGCCCTCGAGAGGCTCAAAGTGCTGTGTGAGGCTAAACTTTGTGAGAATGTAGCCATAAACAATGTTGCAACAACATTGGCCTTGGCAGAGCAGCATCACTGTTTCCAACTTAAAGCTGTATGTCTCAAATTCATTGCAGTGCCTGAAAACTTAAGAGCTGTGATTGAGACTGATGGTTACAAGTACTTGACGGAAAGCTGCCCTTCGGTCATCACCGAATTACTGCAGTATGTTGCAAGGATTGGTGAGCATTCTTTTATTGCTGGTGGATATGGGAAAGGGACCTTGTTAGATGGCAGTGACATGCATGGAAGGCGGGTTAAGCCGAGATTGTATTGA

Protein Analysis

410

Amino Acids

45.59

Weight (kDa)

8.16

Isoelectric Point (pI)

34.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 36 - 167 2e-31 MATH domain
BTB PF00651 193 - 314 4.2e-20 BTB/POZ domain
BACK_BPM_SPOP PF24570 319 - 373 1.6e-27 BPM/SPOP, BACK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
AatII GACGTC 1 cut(s) 80
AccII CGCG 2 cut(s) 269, 498
AciI CCGC 6 cut(s) 50, 123, 189, 496, 878, 1210
AclI AACGTT 1 cut(s) 427
AclWI GGATC 1 cut(s) 158
AcsI RAATTY 1 cut(s) 1022
AcuI CTGAAG 1 cut(s) 418
AcvI CACGTG 2 cut(s) 69, 198
AcyI GRCGYC 1 cut(s) 77
AdeI CACNNNGTG 1 cut(s) 655
AfaI GTAC 5 cut(s) 128, 161, 194, 552, 1079
AfiI CCNNNNNNNGG 2 cut(s) 502, 903
AflII CTTAAG 1 cut(s) 1045
AflIII ACRYGT 2 cut(s) 195, 252
AgsI TTSAA 6 cut(s) 115, 181, 623, 709, 740, 831
AluBI AGCT 6 cut(s) 310, 586, 814, 1010, 1052, 1092
AluI AGCT 6 cut(s) 310, 586, 814, 1010, 1052, 1092
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 3 cut(s) 446, 1022, 1055
AlwI GGATC 1 cut(s) 158
AlwNI CAGNNNCTG 1 cut(s) 1037
Ama87I CYCGRG 2 cut(s) 374, 899
AoxI GGCC 3 cut(s) 201, 861, 972
ApeKI GCWGC 8 cut(s) 21, 52, 102, 285, 665, 881, 985, 1092
ApoI RAATTY 1 cut(s) 1022
Asp700I GAANNNNTTC 1 cut(s) 813
AspS9I GGNCC 8 cut(s) 201, 322, 349, 383, 527, 701, 862, 1176
AsuHPI GGTGA 4 cut(s) 127, 666, 1099, 1151
AsuNHI GCTAGC 1 cut(s) 275
AvaI CYCGRG 2 cut(s) 374, 899
AvaII GGWCC 6 cut(s) 322, 349, 383, 527, 701, 1176
BaeGI GKGCMC 2 cut(s) 8, 691
BauI CACGAG 1 cut(s) 107
BbrPI CACGTG 2 cut(s) 69, 198
BbsI GAAGAC 1 cut(s) 747
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 8 cut(s) 33, 64, 89, 297, 652, 893, 997, 1079
BccI CCATC 4 cut(s) 101, 471, 1061, 1181
BceAI ACGGC 2 cut(s) 28, 238
BcgI CGANNNNNNTGC 4 cut(s) 133, 167, 214, 248
BclI TGATCA 1 cut(s) 628
BcoDI GTCTC 3 cut(s) 446, 1022, 1055
BfaI CTAG 1 cut(s) 276
BfmI CTRYAG 2 cut(s) 543, 1118
BfrI CTTAAG 1 cut(s) 1045
BmcAI AGTACT 1 cut(s) 1079
Bme18I GGWCC 6 cut(s) 322, 349, 383, 527, 701, 1176
BmeT110I CYCGRG 2 cut(s) 374, 899
BmgT120I GGNCC 8 cut(s) 201, 322, 349, 383, 527, 701, 862, 1176
BmiI GGNNCC 5 cut(s) 169, 528, 529, 753, 1177
BmrI ACTGGG 1 cut(s) 796
BmsI GCATC 2 cut(s) 781, 997
BmtI GCTAGC 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 796
BpiI GAAGAC 1 cut(s) 747
BsaAI YACGTR 3 cut(s) 69, 198, 253
BsaHI GRCGYC 1 cut(s) 77
BsaJI CCNNGG 3 cut(s) 138, 403, 975
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 2 cut(s) 502, 903
Bse1I ACTGG 1 cut(s) 791
Bse3DI GCAATG 1 cut(s) 1026
BseDI CCNNGG 3 cut(s) 138, 403, 975
BseGI GGATG 2 cut(s) 616, 796
BseLI CCNNNNNNNGG 2 cut(s) 502, 903
BseMI GCAATG 1 cut(s) 1026
BseMII CTCAG 1 cut(s) 379
BseNI ACTGG 1 cut(s) 791
BseSI GKGCMC 2 cut(s) 8, 691
BseXI GCAGC 8 cut(s) 33, 64, 89, 297, 652, 893, 997, 1079
BsgI GTGCAG 4 cut(s) 67, 630, 651, 828
Bsh1236I CGCG 2 cut(s) 269, 498
BshFI GGCC 3 cut(s) 203, 863, 974
BsiHKAI GWGCWC 1 cut(s) 74
BsiHKCI CYCGRG 2 cut(s) 374, 899
BslFI GGGAC 3 cut(s) 540, 619, 1189
BslI CCNNNNNNNGG 2 cut(s) 502, 903
BsmAI GTCTC 3 cut(s) 446, 1022, 1055
BsmFI GGGAC 3 cut(s) 540, 619, 1189
BsmI GAATGC 1 cut(s) 1144
BsnI GGCC 3 cut(s) 203, 863, 974
BsoBI CYCGRG 2 cut(s) 374, 899
Bsp1286I GDGCHC 3 cut(s) 8, 74, 691
Bsp143I GATC 4 cut(s) 117, 150, 628, 886
BspACI CCGC 6 cut(s) 50, 123, 189, 496, 878, 1210
BspANI GGCC 3 cut(s) 203, 863, 974
BspCNI CTCAG 1 cut(s) 378
BspFNI CGCG 2 cut(s) 269, 498
BspLI GGNNCC 5 cut(s) 169, 528, 529, 753, 1177
BspMAI CTGCAG 1 cut(s) 1122
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 1 cut(s) 158
BspQI GCTCTTC 1 cut(s) 804
BspTI CTTAAG 1 cut(s) 1045
BsrDI GCAATG 1 cut(s) 1026
BsrI ACTGG 1 cut(s) 791
BssECI CCNNGG 3 cut(s) 138, 403, 975
BssMI GATC 4 cut(s) 117, 150, 628, 886
BssNI GRCGYC 1 cut(s) 77
BssSI CACGAG 1 cut(s) 107
BssT1I CCWWGG 2 cut(s) 138, 975
Bst2BI CACGAG 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 696, 995
Bst6I CTCTTC 1 cut(s) 804
BstACI GRCGYC 1 cut(s) 77
BstAFI CTTAAG 1 cut(s) 1045
BstBAI YACGTR 3 cut(s) 69, 198, 253
BstC8I GCNNGC 4 cut(s) 277, 663, 670, 876
BstDEI CTNAG 2 cut(s) 365, 824
BstF5I GGATG 2 cut(s) 616, 796
BstFNI CGCG 2 cut(s) 269, 498
BstKTI GATC 4 cut(s) 120, 153, 631, 889
BstMAI GTCTC 3 cut(s) 446, 1022, 1055
BstMBI GATC 4 cut(s) 117, 150, 628, 886
BstMWI GCNNNNNNNGC 6 cut(s) 49, 285, 820, 913, 1207, 1216
BstNSI RCATGY 2 cut(s) 415, 1201
BstSFI CTRYAG 2 cut(s) 543, 1118
BstSLI GKGCMC 2 cut(s) 8, 691
BstUI CGCG 2 cut(s) 269, 498
BstV1I GCAGC 8 cut(s) 33, 64, 89, 297, 652, 893, 997, 1079
BstV2I GAAGAC 1 cut(s) 747
BstXI CCANNNNNNTGG 1 cut(s) 145
BsuRI GGCC 3 cut(s) 203, 863, 974
BtgZI GCGATG 2 cut(s) 250, 303
BtsCI GGATG 2 cut(s) 616, 796
BtsI GCAGTG 2 cut(s) 1038, 1198
BtsIMutI CAGTG 3 cut(s) 991, 1038, 1198
Cac8I GCNNGC 4 cut(s) 277, 663, 670, 876
CaiI CAGNNNCTG 1 cut(s) 1037
Cfr13I GGNCC 8 cut(s) 201, 322, 349, 383, 527, 701, 862, 1176
CseI GACGC 2 cut(s) 220, 322
Csp6I GTAC 5 cut(s) 127, 160, 193, 551, 1078
CviAII CATG 6 cut(s) 145, 412, 565, 805, 1198, 1202
CviQI GTAC 5 cut(s) 127, 160, 193, 551, 1078
DdeI CTNAG 2 cut(s) 365, 824
DpnI GATC 4 cut(s) 119, 152, 630, 888
DpnII GATC 4 cut(s) 117, 150, 628, 886
DraIII CACNNNGTG 1 cut(s) 655
Eam1104I CTCTTC 1 cut(s) 804
EarI CTCTTC 1 cut(s) 804
Eco130I CCWWGG 2 cut(s) 138, 975
Eco47I GGWCC 6 cut(s) 322, 349, 383, 527, 701, 1176
Eco57I CTGAAG 1 cut(s) 418
Eco72I CACGTG 2 cut(s) 69, 198
Eco88I CYCGRG 2 cut(s) 374, 899
EcoO109I RGGNCCY 2 cut(s) 527, 1176
EcoT14I CCWWGG 2 cut(s) 138, 975
EcoT22I ATGCAT 1 cut(s) 1203
ErhI CCWWGG 2 cut(s) 138, 975
FaeI CATG 6 cut(s) 148, 415, 568, 808, 1201, 1205
FalI AAGNNNNNCTT 4 cut(s) 645, 677, 1081, 1113
FaqI GGGAC 3 cut(s) 540, 619, 1189
FatI CATG 6 cut(s) 144, 411, 564, 804, 1197, 1201
FauI CCCGC 3 cut(s) 116, 182, 1203
FbaI TGATCA 1 cut(s) 628
FokI GGATG 2 cut(s) 623, 803
FspBI CTAG 1 cut(s) 276
HaeIII GGCC 3 cut(s) 203, 863, 974
HgaI GACGC 2 cut(s) 220, 322
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 6 cut(s) 148, 415, 568, 808, 1201, 1205
HindIII AAGCTT 1 cut(s) 584
HphI GGTGA 4 cut(s) 127, 666, 1099, 1151
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 3 cut(s) 172, 437, 460
Hpy188III TCNNGA 7 cut(s) 115, 154, 320, 367, 376, 632, 901
Hpy8I GTNNAC 1 cut(s) 195
Hpy99I CGWCG 6 cut(s) 49, 79, 167, 188, 224, 236
HpyAV CCTTC 4 cut(s) 275, 567, 1107, 1200
HpyCH4III ACNGT 2 cut(s) 696, 995
HpyCH4IV ACGT 7 cut(s) 68, 77, 162, 183, 197, 252, 427
HpyF10VI GCNNNNNNNGC 6 cut(s) 49, 285, 820, 913, 1207, 1216
HpyF3I CTNAG 2 cut(s) 365, 824
HpySE526I ACGT 7 cut(s) 68, 77, 162, 183, 197, 252, 427
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 6 cut(s) 148, 415, 568, 808, 1201, 1205
KflI GGGWCCC 1 cut(s) 527
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 4 cut(s) 117, 150, 628, 886
LguI GCTCTTC 1 cut(s) 804
LmnI GCTCC 2 cut(s) 173, 757
Lsp1109I GCAGC 8 cut(s) 33, 64, 89, 297, 652, 893, 997, 1079
LweI GCATC 2 cut(s) 781, 997
MaeI CTAG 1 cut(s) 276
MaeII ACGT 7 cut(s) 68, 77, 162, 183, 197, 252, 427
MaeIII GTNAC 2 cut(s) 1070, 1193
MalI GATC 4 cut(s) 119, 152, 630, 888
MboI GATC 4 cut(s) 117, 150, 628, 886
MboII GAAGA 4 cut(s) 424, 450, 752, 821
MhlI GDGCHC 3 cut(s) 8, 74, 691
MluCI AATT 4 cut(s) 247, 832, 1022, 1112
MmeI TCCRAC 2 cut(s) 585, 1024
Mph1103I ATGCAT 1 cut(s) 1203
MroXI GAANNNNTTC 1 cut(s) 813
MseI TTAA 6 cut(s) 396, 468, 762, 1005, 1046, 1215
MslI CAYNNNNRTG 1 cut(s) 1031
MspA1I CMGCKG 1 cut(s) 123
MspCI CTTAAG 1 cut(s) 1045
Mva1269I GAATGC 1 cut(s) 1144
MvnI CGCG 2 cut(s) 269, 498
MwoI GCNNNNNNNGC 6 cut(s) 49, 285, 820, 913, 1207, 1216
NdeII GATC 4 cut(s) 117, 150, 628, 886
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 6 cut(s) 148, 415, 568, 808, 1201, 1205
NlaIV GGNNCC 5 cut(s) 169, 528, 529, 753, 1177
NmuCI GTSAC 1 cut(s) 1193
NsiI ATGCAT 1 cut(s) 1203
NspI RCATGY 2 cut(s) 415, 1201
PaeR7I CTCGAG 2 cut(s) 374, 899
PciSI GCTCTTC 1 cut(s) 804
PcsI WCGNNNNNNNCGW 5 cut(s) 74, 159, 168, 228, 249
PctI GAATGC 1 cut(s) 1144
PdmI GAANNNNTTC 1 cut(s) 813
PmaCI CACGTG 2 cut(s) 69, 198
PmlI CACGTG 2 cut(s) 69, 198
Ppu21I YACGTR 3 cut(s) 69, 198, 253
PpuMI RGGWCCY 2 cut(s) 527, 1176
PsiI TTATAA 1 cut(s) 423
Psp1406I AACGTT 1 cut(s) 427
Psp5II RGGWCCY 2 cut(s) 527, 1176
PspCI CACGTG 2 cut(s) 69, 198
PspN4I GGNNCC 5 cut(s) 169, 528, 529, 753, 1177
PspPI GGNCC 8 cut(s) 201, 322, 349, 383, 527, 701, 862, 1176
PspPPI RGGWCCY 2 cut(s) 527, 1176
PstI CTGCAG 1 cut(s) 1122
PstNI CAGNNNCTG 1 cut(s) 1037
RsaI GTAC 5 cut(s) 128, 161, 194, 552, 1079
RsaNI GTAC 5 cut(s) 127, 160, 193, 551, 1078
RseI CAYNNNNRTG 1 cut(s) 1031
SapI GCTCTTC 1 cut(s) 804
SaqAI TTAA 6 cut(s) 396, 468, 762, 1005, 1046, 1215
Sau3AI GATC 4 cut(s) 117, 150, 628, 886
Sau96I GGNCC 8 cut(s) 201, 322, 349, 383, 527, 701, 862, 1176
ScaI AGTACT 1 cut(s) 1079
SduI GDGCHC 3 cut(s) 8, 74, 691
SfaNI GCATC 2 cut(s) 781, 997
SfcI CTRYAG 2 cut(s) 543, 1118
Sfr274I CTCGAG 2 cut(s) 374, 899
SinI GGWCC 6 cut(s) 322, 349, 383, 527, 701, 1176
SlaI CTCGAG 2 cut(s) 374, 899
SmiMI CAYNNNNRTG 1 cut(s) 1031
SmlI CTYRAG 3 cut(s) 374, 899, 1045
SmoI CTYRAG 3 cut(s) 374, 899, 1045
Sse9I AATT 4 cut(s) 247, 832, 1022, 1112
SsiI CCGC 6 cut(s) 50, 123, 189, 496, 878, 1210
SspMI CTAG 1 cut(s) 276
StyI CCWWGG 2 cut(s) 138, 975
TaaI ACNGT 2 cut(s) 696, 995
TaiI ACGT 7 cut(s) 71, 80, 165, 186, 200, 255, 430
TaqI TCGA 5 cut(s) 74, 234, 306, 375, 900
TaqII GACCGA 1 cut(s) 1090
TasI AATT 4 cut(s) 247, 832, 1022, 1112
TatI WGTACW 1 cut(s) 1077
TauI GCSGC 3 cut(s) 52, 498, 881
Tru1I TTAA 6 cut(s) 396, 468, 762, 1005, 1046, 1215
Tru9I TTAA 6 cut(s) 396, 468, 762, 1005, 1046, 1215
TscAI CASTG 3 cut(s) 998, 1038, 1198
TseFI GTSAC 1 cut(s) 1193
TseI GCWGC 8 cut(s) 21, 52, 102, 285, 665, 881, 985, 1092
Tsp45I GTSAC 1 cut(s) 1193
TspDTI ATGAA 3 cut(s) 253, 769, 1015
TspGWI ACGGA 3 cut(s) 536, 623, 1100
TspRI CASTG 3 cut(s) 998, 1038, 1198
Vha464I CTTAAG 1 cut(s) 1045
VpaK11BI GGWCC 6 cut(s) 322, 349, 383, 527, 701, 1176
XapI RAATTY 1 cut(s) 1022
XceI RCATGY 2 cut(s) 415, 1201
XhoI CTCGAG 2 cut(s) 374, 899
XmnI GAANNNNTTC 1 cut(s) 813
XspI CTAG 1 cut(s) 276
ZraI GACGTC 1 cut(s) 78
ZrmI AGTACT 1 cut(s) 1079
Zsp2I ATGCAT 1 cut(s) 1203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.