Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002184

Physical Location & Seq

Genomic Coordinates Reverse (-)

53947274 .. 53952652

Gene Structure 5379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG334600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGGCAAGGTTGTTATAGAAGCCTCCAGGCCGTCTTCTTCTTCGTCTCCGGCGACCTCGTCCTCGCCGGCGCCGACGACCACCTCGTCGACGTCGATCACGGAAACGGTGAACGGGACGCACCAGTTCAAGATCAACGGGTATTCTTTGTCCAAAGGGATTGGGATTGGGAAGTACGTGACCTCCGAAGTTTTCAATGTGGGTGGGTATTCTTGGGCCATCTATTTCTATCCCGACGGCAAGAGCGCCGAGGACAATGCCACGTATGTGTCGCTGTTCATTGCGCTCGCGAGTGAAGGAAGCGATGTGAGAGCTCTGTTTGAGCTGACGCTTTTGGATCAGAGTGGAAATGGGAGGCACAAGGTGCATAGCCATTTCGGGAGGTCATTGGATAGCGGCCCCTACACGCTCAAGTATCGCGGTAGCATGTGGGGTTACAAGCGTTTTTTCAAAAGAACTTCTCTGGAGACATCAGACTACCTTAAAGATGATTGCCTCTCAGTCAACTGTATGGTTGGTGTTGTGAAGTCACACACTGAAGGGCCAAAAATATACTCTATAGCAGTACCACGATCCAACATGGGCCATCATTTTGGGCGACTACTAGAAAGTGGAAAAGGAACTGATGTAAATTTTGAAGTTGATGGGGAAACTTTTGCTGCTCACAAGTTGGTACTAGCGGCTCGATCACCTGTATTCAGGGCCCAACTATTTGGTCCAATGAAAGATCAGAACTCTCAGTGCATAAATGTTGAGGACATAGAGGCTCCAGTCTTTAAGCCCACTCCTATTCTTAACCGCTATAGCCCCTTCTCCTCTCTCGGAATTTCTTTCTTCCTCATCCATCGGTTCCTCCTCAGACTTGGGCAGAATCATGCTACAGCTAAAGAGCTCATTGCAGTTTCAGCTGAGCTTATAGGTCCTTTCTCATGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0031668 GO:0033554 GO:0042221 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071470 GO:0071472 GO:0071496 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB LSM

Protein Analysis

312

Amino Acids

34.06

Weight (kDa)

8.76

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	40 - 172	2.4e-31	MATH domain
BTB	PF00651	199 - 260	4.7e-12	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06190 AT3G06190 AT3G06190 AT3G06190 AT3G06190 AT5G19000 AT5G19000 AT5G19000
fragaria_vesca	FvH4_2g24040 FvH4_2g24040 FvH4_4g14240 FvH4_4g14240 FvH4_4g14240 FvH4_4g14240
malus_domestica	MD03G1269700.v1.1 MD11G1290500.v1.1 MD13G1181000.v1.1 MD16G1181700.v1.1
prunus_persica	Prupe.1G149100_v2.0.a1 Prupe.8G245800_v2.0.a1
pyrus_communis	pycom03g21500 pycom11g25780 pycom13g15620 pycom16g15250
rosa_chinensis	RchiOBHm_Chr4g0418941 RchiOBHm_Chr6g0291771
rosa_laevigata	RLG00000007840 RLG00000012086
rosa_multiflora	Rmu_sc0000935.1_g000060 Rmu_sc0002226.1_g000029 Rmu_sc0002713.1_g000011
rosa_roxburghii	Rroxscaffold_5G00362030 Rroxscaffold_7G00175770
rosa_rugosa	Rorug04G0155300 Rorug06G0221500
rosa_samantha	Rh4AG217300 Rh4BG213100 Rh6AG334300 Rh6BG341500 Rh6CG347500 Rh6DG334600
rosa_wichuraiana	Rw4G018570 Rw6G029100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	85
AatII	GACGTC	1 cut(s)	95
AccB1I	GGYRCC	1 cut(s)	70
AccI	GTMKAC	1 cut(s)	89
AccII	CGCG	2 cut(s)	290, 420
AciI	CCGC	4 cut(s)	396, 420, 680, 799
AclWI	GGATC	2 cut(s)	345, 567
AcsI	RAATTY	2 cut(s)	631, 825
AcuI	CTGAAG	1 cut(s)	558
AcyI	GRCGYC	2 cut(s)	71, 92
AdeI	CACNNNGTG	1 cut(s)	364
AfaI	GTAC	3 cut(s)	176, 567, 675
AgsI	TTSAA	4 cut(s)	130, 196, 451, 638
AjnI	CCWGG	1 cut(s)	26
AleI	CACNNNNGTG	1 cut(s)	266
AluBI	AGCT	6 cut(s)	314, 325, 884, 892, 908, 913
AluI	AGCT	6 cut(s)	314, 325, 884, 892, 908, 913
Alw21I	GWGCWC	2 cut(s)	316, 894
Alw26I	GTCTC	2 cut(s)	51, 461
AlwI	GGATC	2 cut(s)	345, 567
AoxI	GGCC	6 cut(s)	29, 216, 397, 542, 583, 702
ApaI	GGGCCC	1 cut(s)	706
ApeKI	GCWGC	1 cut(s)	659
ApoI	RAATTY	2 cut(s)	631, 825
AspLEI	GCGC	3 cut(s)	73, 248, 286
AspS9I	GGNCC	8 cut(s)	216, 398, 542, 583, 702, 703, 716, 920
AsuHPI	GGTGA	2 cut(s)	121, 681
AvaII	GGWCC	2 cut(s)	716, 920
BaeGI	GKGCMC	1 cut(s)	706
BanI	GGYRCC	1 cut(s)	70
BanII	GRGCYC	3 cut(s)	316, 706, 894
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	2 cut(s)	316, 894
BbvI	GCAGC	1 cut(s)	646
BccI	CCATC	4 cut(s)	227, 594, 638, 852
BceAI	ACGGC	2 cut(s)	16, 253
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciT130I	CCWGG	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	51, 461
BfaI	CTAG	2 cut(s)	605, 677
BfmI	CTRYAG	3 cut(s)	558, 802, 879
BfoI	RGCGCY	2 cut(s)	74, 249
BisI	GCNGC	3 cut(s)	397, 660, 681
BlpI	GCTNAGC	1 cut(s)	909
BlsI	GCNGC	3 cut(s)	398, 661, 682
Bme1390I	CCNGG	1 cut(s)	28
Bme18I	GGWCC	2 cut(s)	716, 920
BmgT120I	GGNCC	8 cut(s)	216, 398, 542, 583, 702, 703, 716, 920
BmiI	GGNNCC	5 cut(s)	72, 400, 704, 768, 851
BmrFI	CCNGG	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	27
BpmI	CTGGAG	3 cut(s)	10, 485, 753
Bpu1102I	GCTNAGC	1 cut(s)	909
BpuEI	CTTGAG	1 cut(s)	395
BsaAI	YACGTR	2 cut(s)	178, 264
BsaHI	GRCGYC	2 cut(s)	71, 92
BsaJI	CCNNGG	1 cut(s)	249
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bse118I	RCCGGY	1 cut(s)	67
Bse1I	ACTGG	2 cut(s)	124, 770
Bse3DI	GCAATG	2 cut(s)	279, 894
BseBI	CCWGG	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	840
BseMI	GCAATG	2 cut(s)	279, 894
BseMII	CTCAG	4 cut(s)	513, 752, 871, 900
BseNI	ACTGG	2 cut(s)	124, 770
BseRI	GAGGAG	2 cut(s)	805, 845
BseSI	GKGCMC	1 cut(s)	706
BseXI	GCAGC	1 cut(s)	646
Bsh1236I	CGCG	2 cut(s)	290, 420
BshFI	GGCC	6 cut(s)	31, 218, 399, 544, 585, 704
BshNI	GGYRCC	1 cut(s)	70
BsiHKAI	GWGCWC	2 cut(s)	316, 894
BsiSI	CCGG	2 cut(s)	50, 68
BslFI	GGGAC	1 cut(s)	130
BsmAI	GTCTC	2 cut(s)	51, 461
BsmBI	CGTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	6 cut(s)	31, 218, 399, 544, 585, 704
Bsp120I	GGGCCC	1 cut(s)	702
Bsp1286I	GDGCHC	3 cut(s)	316, 706, 894
Bsp143I	GATC	6 cut(s)	96, 132, 337, 572, 686, 727
Bsp1720I	GCTNAGC	1 cut(s)	909
Bsp68I	TCGCGA	1 cut(s)	290
BspACI	CCGC	4 cut(s)	396, 420, 680, 799
BspANI	GGCC	6 cut(s)	31, 218, 399, 544, 585, 704
BspCNI	CTCAG	4 cut(s)	512, 751, 870, 901
BspFNI	CGCG	2 cut(s)	290, 420
BspLI	GGNNCC	5 cut(s)	72, 400, 704, 768, 851
BspPI	GGATC	2 cut(s)	345, 567
BspT107I	GGYRCC	1 cut(s)	70
BsrDI	GCAATG	2 cut(s)	279, 894
BsrFI	RCCGGY	1 cut(s)	67
BsrI	ACTGG	2 cut(s)	124, 770
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	6 cut(s)	96, 132, 337, 572, 686, 727
BssNI	GRCGYC	2 cut(s)	71, 92
Bst2UI	CCWGG	1 cut(s)	28
Bst4CI	ACNGT	2 cut(s)	109, 509
BstACI	GRCGYC	2 cut(s)	71, 92
BstAPI	GCANNNNNTGC	1 cut(s)	364
BstBAI	YACGTR	2 cut(s)	178, 264
BstC8I	GCNNGC	2 cut(s)	69, 288
BstDEI	CTNAG	4 cut(s)	499, 738, 857, 909
BstF5I	GGATG	1 cut(s)	840
BstFNI	CGCG	2 cut(s)	290, 420
BstH2I	RGCGCY	2 cut(s)	74, 249
BstHHI	GCGC	3 cut(s)	73, 248, 286
BstKTI	GATC	6 cut(s)	99, 135, 340, 575, 689, 730
BstMAI	GTCTC	2 cut(s)	51, 461
BstMBI	GATC	6 cut(s)	96, 132, 337, 572, 686, 727
BstMWI	GCNNNNNNNGC	2 cut(s)	364, 905
BstNI	CCWGG	1 cut(s)	28
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	26
BstSFI	CTRYAG	3 cut(s)	558, 802, 879
BstSLI	GKGCMC	1 cut(s)	706
BstUI	CGCG	2 cut(s)	290, 420
BstV1I	GCAGC	1 cut(s)	646
BstV2I	GAAGAC	1 cut(s)	27
BstXI	CCANNNNNNTGG	2 cut(s)	593, 713
BsuRI	GGCC	6 cut(s)	31, 218, 399, 544, 585, 704
BtgZI	GCGATG	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	840
BtsIMutI	CAGTG	2 cut(s)	534, 746
BtuMI	TCGCGA	1 cut(s)	290
Cac8I	GCNNGC	2 cut(s)	69, 288
CfoI	GCGC	3 cut(s)	73, 248, 286
Cfr10I	RCCGGY	1 cut(s)	67
Cfr13I	GGNCC	8 cut(s)	216, 398, 542, 583, 702, 703, 716, 920
CseI	GACGC	2 cut(s)	127, 337
Csp6I	GTAC	3 cut(s)	175, 566, 674
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
CviAII	CATG	4 cut(s)	427, 580, 875, 930
CviQI	GTAC	3 cut(s)	175, 566, 674
DdeI	CTNAG	4 cut(s)	499, 738, 857, 909
DinI	GGCGCC	1 cut(s)	72
DpnI	GATC	6 cut(s)	98, 134, 339, 574, 688, 729
DpnII	GATC	6 cut(s)	96, 132, 337, 572, 686, 727
DraIII	CACNNNGTG	1 cut(s)	364
DrdI	GACNNNNNNGTC	1 cut(s)	85
DseDI	GACNNNNNNGTC	1 cut(s)	85
Ecl136II	GAGCTC	2 cut(s)	314, 892
Eco24I	GRGCYC	3 cut(s)	316, 706, 894
Eco47I	GGWCC	2 cut(s)	716, 920
Eco53kI	GAGCTC	2 cut(s)	314, 892
Eco57I	CTGAAG	1 cut(s)	558
EcoICRI	GAGCTC	2 cut(s)	314, 892
EcoO109I	RGGNCCY	2 cut(s)	702, 920
EcoRII	CCWGG	1 cut(s)	26
EcoT38I	GRGCYC	3 cut(s)	316, 706, 894
EgeI	GGCGCC	1 cut(s)	72
EheI	GGCGCC	1 cut(s)	72
Esp3I	CGTCTC	1 cut(s)	51
FaeI	CATG	4 cut(s)	430, 583, 878, 933
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	4 cut(s)	426, 579, 874, 929
FblI	GTMKAC	1 cut(s)	89
Fnu4HI	GCNGC	3 cut(s)	397, 660, 681
FokI	GGATG	1 cut(s)	827
FriOI	GRGCYC	3 cut(s)	316, 706, 894
Fsp4HI	GCNGC	3 cut(s)	397, 660, 681
FspBI	CTAG	2 cut(s)	605, 677
GlaI	GCGC	3 cut(s)	72, 247, 285
GluI	GCNGC	3 cut(s)	397, 660, 681
GsuI	CTGGAG	3 cut(s)	10, 485, 753
HaeII	RGCGCY	2 cut(s)	74, 249
HaeIII	GGCC	6 cut(s)	31, 218, 399, 544, 585, 704
HapII	CCGG	2 cut(s)	50, 68
HgaI	GACGC	2 cut(s)	127, 337
HhaI	GCGC	3 cut(s)	73, 248, 286
Hin1I	GRCGYC	2 cut(s)	71, 92
Hin1II	CATG	4 cut(s)	430, 583, 878, 933
Hin6I	GCGC	3 cut(s)	71, 246, 284
HinP1I	GCGC	3 cut(s)	71, 246, 284
HincII	GTYRAC	2 cut(s)	90, 505
HindII	GTYRAC	2 cut(s)	90, 505
HinfI	GANTC	1 cut(s)	871
HpaII	CCGG	2 cut(s)	50, 68
HphI	GGTGA	2 cut(s)	121, 681
Hpy166II	GTNNAC	3 cut(s)	90, 112, 505
Hpy188I	TCNGA	6 cut(s)	187, 342, 475, 732, 824, 860
Hpy188III	TCNNGA	5 cut(s)	130, 233, 289, 379, 464
Hpy8I	GTNNAC	3 cut(s)	90, 112, 505
Hpy99I	CGWCG	5 cut(s)	79, 91, 94, 97, 239
HpyAV	CCTTC	3 cut(s)	290, 533, 820
HpyCH4III	ACNGT	2 cut(s)	109, 509
HpyCH4IV	ACGT	3 cut(s)	92, 177, 263
HpyCH4V	TGCA	3 cut(s)	367, 744, 899
HpyF10VI	GCNNNNNNNGC	2 cut(s)	364, 905
HpyF3I	CTNAG	4 cut(s)	499, 738, 857, 909
HpySE526I	ACGT	3 cut(s)	92, 177, 263
Hsp92I	GRCGYC	2 cut(s)	71, 92
Hsp92II	CATG	4 cut(s)	430, 583, 878, 933
HspAI	GCGC	3 cut(s)	71, 246, 284
KasI	GGCGCC	1 cut(s)	70
KroI	GCCGGC	1 cut(s)	67
KroNI	GCCGGC	1 cut(s)	69
Kzo9I	GATC	6 cut(s)	96, 132, 337, 572, 686, 727
LmnI	GCTCC	1 cut(s)	772
LpnPI	CCDG	9 cut(s)	13, 40, 63, 81, 137, 449, 685, 705, 783
Lsp1109I	GCAGC	1 cut(s)	646
MaeI	CTAG	2 cut(s)	605, 677
MaeII	ACGT	3 cut(s)	92, 177, 263
MaeIII	GTNAC	3 cut(s)	178, 434, 528
MalI	GATC	6 cut(s)	98, 134, 339, 574, 688, 729
MboI	GATC	6 cut(s)	96, 132, 337, 572, 686, 727
MboII	GAAGA	4 cut(s)	27, 30, 33, 826
MhlI	GDGCHC	3 cut(s)	316, 706, 894
MluCI	AATT	3 cut(s)	631, 825, 934
Mly113I	GGCGCC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	600
MreI	CGCCGGCG	1 cut(s)	67
MroNI	GCCGGC	1 cut(s)	67
MseI	TTAA	4 cut(s)	483, 777, 795, 937
MslI	CAYNNNNRTG	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	908
MspI	CCGG	2 cut(s)	50, 68
MspR9I	CCNGG	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	28
MvnI	CGCG	2 cut(s)	290, 420
MwoI	GCNNNNNNNGC	2 cut(s)	364, 905
NaeI	GCCGGC	1 cut(s)	69
NarI	GGCGCC	1 cut(s)	71
NdeII	GATC	6 cut(s)	96, 132, 337, 572, 686, 727
NgoMIV	GCCGGC	1 cut(s)	67
NlaIII	CATG	4 cut(s)	430, 583, 878, 933
NlaIV	GGNNCC	5 cut(s)	72, 400, 704, 768, 851
NmeAIII	GCCGAG	1 cut(s)	274
NmuCI	GTSAC	2 cut(s)	178, 528
NruI	TCGCGA	1 cut(s)	290
NspI	RCATGY	1 cut(s)	430
OliI	CACNNNNGTG	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	5 cut(s)	50, 71, 83, 92, 183
PdiI	GCCGGC	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	871
PflFI	GACNNNGTC	1 cut(s)	58
PkrI	GCNGC	3 cut(s)	398, 661, 682
PluTI	GGCGCC	1 cut(s)	74
Ppu21I	YACGTR	2 cut(s)	178, 264
PpuMI	RGGWCCY	1 cut(s)	920
Psp124BI	GAGCTC	2 cut(s)	316, 894
Psp5II	RGGWCCY	1 cut(s)	920
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
PspN4I	GGNNCC	5 cut(s)	72, 400, 704, 768, 851
PspOMI	GGGCCC	1 cut(s)	702
PspPI	GGNCC	8 cut(s)	216, 398, 542, 583, 702, 703, 716, 920
PspPPI	RGGWCCY	1 cut(s)	920
PsyI	GACNNNGTC	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	908
RruI	TCGCGA	1 cut(s)	290
RsaI	GTAC	3 cut(s)	176, 567, 675
RsaNI	GTAC	3 cut(s)	175, 566, 674
RseI	CAYNNNNRTG	1 cut(s)	266
SacI	GAGCTC	2 cut(s)	316, 894
SalI	GTCGAC	1 cut(s)	88
SaqAI	TTAA	4 cut(s)	483, 777, 795, 937
SatI	GCNGC	3 cut(s)	397, 660, 681
Sau3AI	GATC	6 cut(s)	96, 132, 337, 572, 686, 727
Sau96I	GGNCC	8 cut(s)	216, 398, 542, 583, 702, 703, 716, 920
ScrFI	CCNGG	1 cut(s)	28
SduI	GDGCHC	3 cut(s)	316, 706, 894
SfcI	CTRYAG	3 cut(s)	558, 802, 879
SfoI	GGCGCC	1 cut(s)	72
SgrAI	CRCCGGYG	1 cut(s)	67
SgrDI	CGTCGACG	1 cut(s)	88
SinI	GGWCC	2 cut(s)	716, 920
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	3 cut(s)	631, 825, 934
SsiI	CCGC	4 cut(s)	396, 420, 680, 799
SspDI	GGCGCC	1 cut(s)	70
SspMI	CTAG	2 cut(s)	605, 677
SstI	GAGCTC	2 cut(s)	316, 894
StyD4I	CCNGG	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	109, 509
TaiI	ACGT	3 cut(s)	95, 180, 266
TaqI	TCGA	3 cut(s)	89, 95, 685
TasI	AATT	3 cut(s)	631, 825, 934
TauI	GCSGC	2 cut(s)	399, 683
TfiI	GAWTC	1 cut(s)	871
Tru1I	TTAA	4 cut(s)	483, 777, 795, 937
Tru9I	TTAA	4 cut(s)	483, 777, 795, 937
TscAI	CASTG	2 cut(s)	541, 746
TseFI	GTSAC	2 cut(s)	178, 528
TseI	GCWGC	1 cut(s)	659
Tsp45I	GTSAC	2 cut(s)	178, 528
TspDTI	ATGAA	2 cut(s)	268, 737
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	2 cut(s)	541, 746
Tth111I	GACNNNGTC	1 cut(s)	58
VpaK11BI	GGWCC	2 cut(s)	716, 920
XapI	RAATTY	2 cut(s)	631, 825
XceI	RCATGY	1 cut(s)	430
XmiI	GTMKAC	1 cut(s)	89
XspI	CTAG	2 cut(s)	605, 677
ZraI	GACGTC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.