pycom03g21500

BTB POZ and MATH domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
21797469 .. 21799435
1967 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g21500.3

Sequence Viewer

Length: 1236 bp
ATGGGTAAGGTTCTCAGAGAAACCTCCATGCCCTCGTCCTCTTCGTCTTCCCCAGCCTCTTCGCCGCCTCCGACCACCACTGCGTCGACGTCGATCACCGAGACCGTCAACGGGACCCACCATTTCAAGATCAACGGCTATTCGCTGTCCAAGGGGATTGGGATTGGGAAGTACATAGCTTCCGATACGTTTAATGTCGGTGGGTTTTCGTGGGCTATCTATTTCTACCCGGACGGCAAGAGCGTTGAGGACAATGCCGCCTACGTCTCGCTCTTCATCGCGCTCGCCAGCGAAGGAACCGATGTGAGAGCGCTGTTCGAATTGACGCTTTTGGATCAGAGCGGGAACGAGAGGCACAAGGTGCATAGCCATTTCGGGAGGACATTGGATAGCGGCCCTTACACGCTCAAGTATCGCGGAAGCATGTGGGGTTACAAGCGTTTTTTCAAAAGAACTTCTCTGGAGACATCGGACTACCTTAAAGATGACTGCCTATCAGTTAACTGTATGGTTGGTGTTGTCAAGTCACATACACAGGGACCGAAAATTTACTCTATACCGATACCGCCATCCAGCATGGGCCATCAGTTTGGCAAGCTACTGGAAACCGGAAAGGGAACTGATGTTAGTTTCGAAGTTGACGAGGAAATTTTCTGTGCTCACAAGTTGGTACTAGCAGCTCGATCACCTGTATTCCGGGCCCAACTATTTGGTCCCATGAAAGATCAGAATACTCGTTGCATAAAAGTTGAGGACATAGAGGCTCCAGTCTTCAAGGCGTTACTTCATTTTATATACTGGGATTCACTGCCTGGCATAGAAGAGCTTACTGGAATCAACTCGAATGGGGCTTCCACTTTGATGGCTCAGCATCTGCTTGCAGCAGCAGATCGCTATGGCTTAGACAGGCTCAGGTTCATGTGTGAGGCAAATCTTTGCCAGGATGTCGCTATAAACAATGTCGCAACGACATTAGCTTTGGCAGAACAACATCACTGCTCCCAGCTGAAACCTGTGTGTCTCAGATTCATTGCAACTCCCGGAAATCTATTAGGTGTTATGCAAACAGATGGTTACAAACACTTGAAGGAAAGCTGCCCTTCTGTTCTGACCGATCTCTTGGAATATGTAGCTAGTGTCAATGAGCATTCTGCAACCTTATGCAGGCAAGGGAATGAAGCTATTCCCGATGGTAGTGACATCCATGGCAGGCGGGTGAAGCAAAGGCTATTGTAA

Protein Analysis

412

Amino Acids

45.11

Weight (kDa)

6.73

Isoelectric Point (pI)

29.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 92
AccBSI CCGCTC 1 cut(s) 342
AccI GTMKAC 1 cut(s) 86
AccII CGCG 2 cut(s) 281, 417
AciI CCGC 7 cut(s) 65, 258, 342, 393, 417, 566, 1213
AclWI GGATC 1 cut(s) 342
AcsI RAATTY 2 cut(s) 546, 648
AcyI GRCGYC 1 cut(s) 89
AdeI CACNNNGTG 1 cut(s) 361
AfaI GTAC 2 cut(s) 173, 672
AfeI AGCGCT 1 cut(s) 312
AfiI CCNNNNNNNGG 2 cut(s) 111, 1164
AgsI TTSAA 4 cut(s) 127, 448, 775, 1087
AjnI CCWGG 2 cut(s) 811, 939
AluBI AGCT 9 cut(s) 179, 598, 680, 826, 977, 1006, 1095, 1133, 1181
AluI AGCT 9 cut(s) 179, 598, 680, 826, 977, 1006, 1095, 1133, 1181
Alw21I GWGCWC 1 cut(s) 661
Alw26I GTCTC 4 cut(s) 95, 271, 458, 1025
AlwI GGATC 1 cut(s) 342
AlwNI CAGNNNCTG 1 cut(s) 874
Aor51HI AGCGCT 1 cut(s) 312
AoxI GGCC 3 cut(s) 394, 580, 699
ApaI GGGCCC 1 cut(s) 703
ApeKI GCWGC 4 cut(s) 677, 881, 884, 1095
ApoI RAATTY 2 cut(s) 546, 648
ArsI GACNNNNNNTTYG 2 cut(s) 961, 993
Asp700I GAANNNNTTC 1 cut(s) 1182
AspLEI GCGC 2 cut(s) 283, 313
AspS9I GGNCC 7 cut(s) 114, 395, 539, 580, 699, 700, 713
AsuC2I CCSGG 3 cut(s) 230, 698, 1041
AsuHPI GGTGA 3 cut(s) 88, 678, 1228
AsuII TTCGAA 2 cut(s) 318, 633
AvaII GGWCC 3 cut(s) 114, 539, 713
BaeGI GKGCMC 1 cut(s) 703
BanII GRGCYC 1 cut(s) 703
BbsI GAAGAC 2 cut(s) 39, 763
Bbv12I GWGCWC 1 cut(s) 661
BbvI GCAGC 4 cut(s) 689, 893, 896, 1082
BccI CCATC 5 cut(s) 577, 591, 856, 1064, 1184
BceAI ACGGC 2 cut(s) 151, 250
BciT130I CCWGG 2 cut(s) 813, 941
BcnI CCSGG 3 cut(s) 230, 698, 1041
BcoDI GTCTC 4 cut(s) 95, 271, 458, 1025
BfaI CTAG 2 cut(s) 674, 1134
BfoI RGCGCY 1 cut(s) 314
BisI GCNGC 7 cut(s) 65, 258, 394, 678, 882, 885, 1096
BlpI GCTNAGC 1 cut(s) 867
BlsI GCNGC 7 cut(s) 66, 259, 395, 679, 883, 886, 1097
Bme1390I CCNGG 5 cut(s) 230, 698, 813, 941, 1041
Bme18I GGWCC 3 cut(s) 114, 539, 713
BmgT120I GGNCC 7 cut(s) 114, 395, 539, 580, 699, 700, 713
BmiI GGNNCC 7 cut(s) 115, 116, 298, 540, 701, 715, 765
BmrFI CCNGG 5 cut(s) 230, 698, 813, 941, 1041
BmrI ACTGGG 1 cut(s) 808
BmsI GCATC 1 cut(s) 880
BmuI ACTGGG 1 cut(s) 808
BpiI GAAGAC 2 cut(s) 39, 763
BpmI CTGGAG 2 cut(s) 482, 750
Bpu10I CCTNAGC 1 cut(s) 911
Bpu1102I GCTNAGC 1 cut(s) 867
Bpu14I TTCGAA 2 cut(s) 318, 633
BpuEI CTTGAG 1 cut(s) 392
BpuMI CCSGG 3 cut(s) 230, 698, 1041
BsaHI GRCGYC 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 150, 1204
BsaWI WCCGGW 1 cut(s) 608
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 1164
Bse1I ACTGG 4 cut(s) 606, 767, 803, 835
Bse3DI GCAATG 1 cut(s) 1029
BseBI CCWGG 2 cut(s) 813, 941
BseDI CCNNGG 2 cut(s) 150, 1204
BseGI GGATG 3 cut(s) 569, 949, 1200
BseLI CCNNNNNNNGG 2 cut(s) 111, 1164
BseMI GCAATG 1 cut(s) 1029
BseMII CTCAG 4 cut(s) 28, 881, 925, 1036
BseNI ACTGG 4 cut(s) 606, 767, 803, 835
BseSI GKGCMC 1 cut(s) 703
BseXI GCAGC 4 cut(s) 689, 893, 896, 1082
BseYI CCCAGC 2 cut(s) 52, 1002
Bsh1236I CGCG 2 cut(s) 281, 417
BshFI GGCC 3 cut(s) 396, 582, 701
BsiHKAI GWGCWC 1 cut(s) 661
BsiSI CCGG 4 cut(s) 230, 609, 697, 1041
BslFI GGGAC 3 cut(s) 127, 552, 699
BslI CCNNNNNNNGG 2 cut(s) 111, 1164
BsmAI GTCTC 4 cut(s) 95, 271, 458, 1025
BsmBI CGTCTC 1 cut(s) 271
BsmFI GGGAC 3 cut(s) 127, 552, 699
BsmI GAATGC 1 cut(s) 1147
BsnI GGCC 3 cut(s) 396, 582, 701
Bso31I GGTCTC 1 cut(s) 95
Bsp119I TTCGAA 2 cut(s) 318, 633
Bsp120I GGGCCC 1 cut(s) 699
Bsp1286I GDGCHC 2 cut(s) 661, 703
Bsp143I GATC 7 cut(s) 93, 129, 334, 683, 724, 889, 1114
Bsp1720I GCTNAGC 1 cut(s) 867
Bsp19I CCATGG 1 cut(s) 1204
BspACI CCGC 7 cut(s) 65, 258, 342, 393, 417, 566, 1213
BspANI GGCC 3 cut(s) 396, 582, 701
BspCNI CTCAG 4 cut(s) 27, 880, 924, 1035
BspFNI CGCG 2 cut(s) 281, 417
BspLI GGNNCC 7 cut(s) 115, 116, 298, 540, 701, 715, 765
BspPI GGATC 1 cut(s) 342
BspQI GCTCTTC 2 cut(s) 278, 816
BspT104I TTCGAA 2 cut(s) 318, 633
BspTNI GGTCTC 1 cut(s) 95
BsrBI CCGCTC 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 1029
BsrI ACTGG 4 cut(s) 606, 767, 803, 835
BssECI CCNNGG 2 cut(s) 150, 1204
BssMI GATC 7 cut(s) 93, 129, 334, 683, 724, 889, 1114
BssNI GRCGYC 1 cut(s) 89
BssT1I CCWWGG 2 cut(s) 150, 1204
Bst2UI CCWGG 2 cut(s) 813, 941
Bst4CI ACNGT 2 cut(s) 106, 506
Bst6I CTCTTC 4 cut(s) 46, 64, 278, 816
BstACI GRCGYC 1 cut(s) 89
BstAPI GCANNNNNTGC 1 cut(s) 361
BstBI TTCGAA 2 cut(s) 318, 633
BstC8I GCNNGC 6 cut(s) 285, 289, 596, 879, 1166, 1211
BstDEI CTNAG 5 cut(s) 14, 867, 901, 911, 1022
BstDSI CCRYGG 1 cut(s) 1204
BstENI CCTNNNNNAGG 1 cut(s) 1162
BstF5I GGATG 3 cut(s) 569, 949, 1200
BstFNI CGCG 2 cut(s) 281, 417
BstH2I RGCGCY 1 cut(s) 314
BstHHI GCGC 2 cut(s) 283, 313
BstKTI GATC 7 cut(s) 96, 132, 337, 686, 727, 892, 1117
BstMAI GTCTC 4 cut(s) 95, 271, 458, 1025
BstMBI GATC 7 cut(s) 93, 129, 334, 683, 724, 889, 1114
BstMWI GCNNNNNNNGC 2 cut(s) 361, 1219
BstNI CCWGG 2 cut(s) 813, 941
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 5 cut(s) 228, 696, 811, 939, 1039
BstSLI GKGCMC 1 cut(s) 703
BstUI CGCG 2 cut(s) 281, 417
BstV1I GCAGC 4 cut(s) 689, 893, 896, 1082
BstV2I GAAGAC 2 cut(s) 39, 763
BstXI CCANNNNNNTGG 3 cut(s) 590, 710, 862
BsuRI GGCC 3 cut(s) 396, 582, 701
BtgI CCRYGG 1 cut(s) 1204
BtgZI GCGATG 1 cut(s) 262
BtsCI GGATG 3 cut(s) 569, 949, 1200
BtsI GCAGTG 3 cut(s) 78, 806, 994
BtsIMutI CAGTG 3 cut(s) 78, 806, 994
Cac8I GCNNGC 6 cut(s) 285, 289, 596, 879, 1166, 1211
CaiI CAGNNNCTG 1 cut(s) 874
CfoI GCGC 2 cut(s) 283, 313
Cfr13I GGNCC 7 cut(s) 114, 395, 539, 580, 699, 700, 713
CseI GACGC 2 cut(s) 72, 334
Csp6I GTAC 2 cut(s) 172, 671
CviAII CATG 6 cut(s) 28, 424, 577, 718, 919, 1205
CviQI GTAC 2 cut(s) 172, 671
DdeI CTNAG 5 cut(s) 14, 867, 901, 911, 1022
DpnI GATC 7 cut(s) 95, 131, 336, 685, 726, 891, 1116
DpnII GATC 7 cut(s) 93, 129, 334, 683, 724, 889, 1114
DraIII CACNNNGTG 1 cut(s) 361
Eam1104I CTCTTC 4 cut(s) 46, 64, 278, 816
EarI CTCTTC 4 cut(s) 46, 64, 278, 816
Eco130I CCWWGG 2 cut(s) 150, 1204
Eco24I GRGCYC 1 cut(s) 703
Eco31I GGTCTC 1 cut(s) 95
Eco47I GGWCC 3 cut(s) 114, 539, 713
Eco47III AGCGCT 1 cut(s) 312
EcoNI CCTNNNNNAGG 1 cut(s) 1162
EcoO109I RGGNCCY 1 cut(s) 114
EcoRII CCWGG 2 cut(s) 811, 939
EcoT14I CCWWGG 2 cut(s) 150, 1204
EcoT38I GRGCYC 1 cut(s) 703
ErhI CCWWGG 2 cut(s) 150, 1204
Esp3I CGTCTC 1 cut(s) 271
FaeI CATG 6 cut(s) 31, 427, 580, 721, 922, 1208
FalI AAGNNNNNCTT 2 cut(s) 1084, 1116
FaqI GGGAC 3 cut(s) 127, 552, 699
FatI CATG 6 cut(s) 27, 423, 576, 717, 918, 1204
FauI CCCGC 2 cut(s) 335, 1206
FblI GTMKAC 1 cut(s) 86
Fnu4HI GCNGC 7 cut(s) 65, 258, 394, 678, 882, 885, 1096
FokI GGATG 3 cut(s) 556, 956, 1187
FriOI GRGCYC 1 cut(s) 703
Fsp4HI GCNGC 7 cut(s) 65, 258, 394, 678, 882, 885, 1096
FspBI CTAG 2 cut(s) 674, 1134
GlaI GCGC 2 cut(s) 282, 312
GluI GCNGC 7 cut(s) 65, 258, 394, 678, 882, 885, 1096
GsaI CCCAGC 2 cut(s) 56, 1006
GsuI CTGGAG 2 cut(s) 482, 750
HaeII RGCGCY 1 cut(s) 314
HaeIII GGCC 3 cut(s) 396, 582, 701
HapII CCGG 4 cut(s) 230, 609, 697, 1041
HgaI GACGC 2 cut(s) 72, 334
HhaI GCGC 2 cut(s) 283, 313
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 6 cut(s) 31, 427, 580, 721, 922, 1208
Hin6I GCGC 2 cut(s) 281, 311
HinP1I GCGC 2 cut(s) 281, 311
HincII GTYRAC 4 cut(s) 87, 109, 502, 640
HindII GTYRAC 4 cut(s) 87, 109, 502, 640
HinfI GANTC 3 cut(s) 803, 834, 1026
HpaI GTTAAC 1 cut(s) 502
HpaII CCGG 4 cut(s) 230, 609, 697, 1041
HphI GGTGA 3 cut(s) 88, 678, 1228
Hpy166II GTNNAC 4 cut(s) 87, 109, 502, 640
Hpy188I TCNGA 8 cut(s) 17, 72, 184, 339, 472, 729, 1025, 1110
Hpy188III TCNNGA 4 cut(s) 127, 376, 461, 1187
Hpy8I GTNNAC 4 cut(s) 87, 109, 502, 640
Hpy99I CGWCG 3 cut(s) 88, 91, 94
HpyAV CCTTC 3 cut(s) 287, 1081, 1110
HpyCH4III ACNGT 2 cut(s) 106, 506
HpyCH4IV ACGT 3 cut(s) 89, 188, 264
HpyCH4V TGCA 7 cut(s) 364, 741, 881, 1034, 1063, 1154, 1164
HpyF10VI GCNNNNNNNGC 2 cut(s) 361, 1219
HpyF3I CTNAG 5 cut(s) 14, 867, 901, 911, 1022
HpySE526I ACGT 3 cut(s) 89, 188, 264
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 6 cut(s) 31, 427, 580, 721, 922, 1208
HspAI GCGC 2 cut(s) 281, 311
KflI GGGWCCC 1 cut(s) 114
KspAI GTTAAC 1 cut(s) 502
Kzo9I GATC 7 cut(s) 93, 129, 334, 683, 724, 889, 1114
LguI GCTCTTC 2 cut(s) 278, 816
LmnI GCTCC 2 cut(s) 769, 1004
Lsp1109I GCAGC 4 cut(s) 689, 893, 896, 1082
LweI GCATC 1 cut(s) 880
MaeI CTAG 2 cut(s) 674, 1134
MaeII ACGT 3 cut(s) 89, 188, 264
MaeIII GTNAC 5 cut(s) 431, 525, 780, 1073, 1196
MalI GATC 7 cut(s) 95, 131, 336, 685, 726, 891, 1116
MbiI CCGCTC 1 cut(s) 342
MboI GATC 7 cut(s) 93, 129, 334, 683, 724, 889, 1114
MboII GAAGA 6 cut(s) 33, 39, 51, 265, 763, 833
MhlI GDGCHC 2 cut(s) 661, 703
MluCI AATT 3 cut(s) 320, 546, 648
MmeI TCCRAC 1 cut(s) 95
MroXI GAANNNNTTC 1 cut(s) 1182
MseI TTAA 3 cut(s) 192, 480, 501
MslI CAYNNNNRTG 1 cut(s) 860
MspA1I CMGCKG 1 cut(s) 1006
MspI CCGG 4 cut(s) 230, 609, 697, 1041
MspR9I CCNGG 5 cut(s) 230, 698, 813, 941, 1041
Mva1269I GAATGC 1 cut(s) 1147
MvaI CCWGG 2 cut(s) 813, 941
MvnI CGCG 2 cut(s) 281, 417
MwoI GCNNNNNNNGC 2 cut(s) 361, 1219
NciI CCSGG 3 cut(s) 230, 698, 1041
NcoI CCATGG 1 cut(s) 1204
NdeII GATC 7 cut(s) 93, 129, 334, 683, 724, 889, 1114
NlaIII CATG 6 cut(s) 31, 427, 580, 721, 922, 1208
NlaIV GGNNCC 7 cut(s) 115, 116, 298, 540, 701, 715, 765
NmuCI GTSAC 2 cut(s) 525, 1196
NspI RCATGY 1 cut(s) 427
NspV TTCGAA 2 cut(s) 318, 633
PciSI GCTCTTC 2 cut(s) 278, 816
PcsI WCGNNNNNNNCGW 4 cut(s) 41, 68, 240, 639
PctI GAATGC 1 cut(s) 1147
PdmI GAANNNNTTC 1 cut(s) 1182
PfeI GAWTC 3 cut(s) 803, 834, 1026
PfoI TCCNGGA 1 cut(s) 1039
PkrI GCNGC 7 cut(s) 66, 259, 395, 679, 883, 886, 1097
PpuMI RGGWCCY 1 cut(s) 114
Psp5II RGGWCCY 1 cut(s) 114
Psp6I CCWGG 2 cut(s) 811, 939
PspFI CCCAGC 2 cut(s) 52, 1002
PspGI CCWGG 2 cut(s) 811, 939
PspN4I GGNNCC 7 cut(s) 115, 116, 298, 540, 701, 715, 765
PspOMI GGGCCC 1 cut(s) 699
PspPI GGNCC 7 cut(s) 114, 395, 539, 580, 699, 700, 713
PspPPI RGGWCCY 1 cut(s) 114
PstNI CAGNNNCTG 1 cut(s) 874
PvuII CAGCTG 1 cut(s) 1006
RsaI GTAC 2 cut(s) 173, 672
RsaNI GTAC 2 cut(s) 172, 671
RseI CAYNNNNRTG 1 cut(s) 860
SalI GTCGAC 1 cut(s) 85
SapI GCTCTTC 2 cut(s) 278, 816
SaqAI TTAA 3 cut(s) 192, 480, 501
SatI GCNGC 7 cut(s) 65, 258, 394, 678, 882, 885, 1096
Sau3AI GATC 7 cut(s) 93, 129, 334, 683, 724, 889, 1114
Sau96I GGNCC 7 cut(s) 114, 395, 539, 580, 699, 700, 713
ScrFI CCNGG 5 cut(s) 230, 698, 813, 941, 1041
SduI GDGCHC 2 cut(s) 661, 703
SfaNI GCATC 1 cut(s) 880
SfuI TTCGAA 2 cut(s) 318, 633
SgrDI CGTCGACG 1 cut(s) 85
SinI GGWCC 3 cut(s) 114, 539, 713
SmiMI CAYNNNNRTG 1 cut(s) 860
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 3 cut(s) 320, 546, 648
SsiI CCGC 7 cut(s) 65, 258, 342, 393, 417, 566, 1213
SspMI CTAG 2 cut(s) 674, 1134
StyD4I CCNGG 5 cut(s) 228, 696, 811, 939, 1039
StyI CCWWGG 2 cut(s) 150, 1204
TaaI ACNGT 2 cut(s) 106, 506
TaiI ACGT 3 cut(s) 92, 191, 267
TaqI TCGA 6 cut(s) 86, 92, 318, 633, 682, 842
TaqII GACCGA 2 cut(s) 556, 1127
TasI AATT 3 cut(s) 320, 546, 648
TatI WGTACW 1 cut(s) 171
TauI GCSGC 3 cut(s) 67, 260, 396
TfiI GAWTC 3 cut(s) 803, 834, 1026
Tru1I TTAA 3 cut(s) 192, 480, 501
Tru9I TTAA 3 cut(s) 192, 480, 501
TscAI CASTG 3 cut(s) 85, 813, 1001
TseFI GTSAC 2 cut(s) 525, 1196
TseI GCWGC 4 cut(s) 677, 881, 884, 1095
Tsp45I GTSAC 2 cut(s) 525, 1196
TspDTI ATGAA 6 cut(s) 265, 734, 776, 907, 1018, 1191
TspRI CASTG 3 cut(s) 85, 813, 1001
VpaK11BI GGWCC 3 cut(s) 114, 539, 713
XagI CCTNNNNNAGG 1 cut(s) 1162
XapI RAATTY 2 cut(s) 546, 648
XceI RCATGY 1 cut(s) 427
XmiI GTMKAC 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 1182
XspI CTAG 2 cut(s) 674, 1134
ZraI GACGTC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.