Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002184

Physical Location & Seq

Genomic Coordinates Reverse (-)

57337718 .. 57339266

Gene Structure 1549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG341500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGGCAAGGTTGTTATAGAAGCCTCCAGGCCGTCTTCTTCTTCGTCTCCGGCGACCTCGTCCTCGCCGGCGCCGACGACCACCTCGTCGACGTCGATCACGGAGACGGTGAACGGGACGCACCAGTTCAAGATCAACGGGTATTCTTTGTCCAAAGGGATTGGGATTGGGAAGTACGTGACCTCCGAAGTTTTCAATGTGGGTGGGTATTCTTGGGCCATCTATTTCTATCCCGACGGCAAGAGCGCCGAGGACAATGCCACGTATGTGTCGCTGTTCATTGCGCTCGCGAGTGAAGGAAGCGATGTGAGAGCTCTGTTTGAGCTGACGCTTTTGGATCAGAGTGGAAATGGGAGGCACAAGGTGCATAGCCATTTCGGGAGGTCATTGGATAGCGGCCCCTACACGCTCAAGTATCGCGGTAGCATGTGGGGTTACAAGCGTTTTTTCAAAAGAACTTCTCTGGAGACATCAGACTACCTTAAAGATGATTGCCTCTCAGTCAACTGTATGGTTGGTGTTGTGAAGTCACACACTGAAGGGCCAAAAATATACTCTATAGCAGTACCACGATCCAACATGGGCCATCATTTTGGGCGACTACTAGAAAGTGGAAAGGGAACTGATGTAAATTTTGAAGTTGATGGGGAAACTTTTGCTGCTCACAAGTTGGTACTAGCAGCTCGATCACCTGTATTCAGGGCCCAACTATTTGGTCCAATGAAAGATCAGAACTCTCAGTGCATAAATGTTGAGGACATAGAGGCTCCAGTCTTTAAGGTAGGATGCATTTCTTTTTCTTTGGTTCATTATGTGTGTACATCATTTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0031668 GO:0033554 GO:0042221 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071470 GO:0071472 GO:0071496 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB LSM

Protein Analysis

277

Amino Acids

30.18

Weight (kDa)

8.2

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	40 - 172	1.8e-31	MATH domain
BTB	PF00651	199 - 260	5e-12	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06190 AT3G06190 AT3G06190 AT3G06190 AT3G06190 AT5G19000 AT5G19000 AT5G19000
fragaria_vesca	FvH4_2g24040 FvH4_2g24040 FvH4_4g14240 FvH4_4g14240 FvH4_4g14240 FvH4_4g14240
malus_domestica	MD03G1269700.v1.1 MD11G1290500.v1.1 MD13G1181000.v1.1 MD16G1181700.v1.1
prunus_persica	Prupe.1G149100_v2.0.a1 Prupe.8G245800_v2.0.a1
pyrus_communis	pycom03g21500 pycom11g25780 pycom13g15620 pycom16g15250
rosa_chinensis	RchiOBHm_Chr4g0418941 RchiOBHm_Chr6g0291771
rosa_laevigata	RLG00000007840 RLG00000012086
rosa_multiflora	Rmu_sc0000935.1_g000060 Rmu_sc0002226.1_g000029 Rmu_sc0002713.1_g000011
rosa_roxburghii	Rroxscaffold_5G00362030 Rroxscaffold_7G00175770
rosa_rugosa	Rorug04G0155300 Rorug06G0221500
rosa_samantha	Rh4AG217300 Rh4BG213100 Rh6AG334300 Rh6BG341500 Rh6CG347500 Rh6DG334600
rosa_wichuraiana	Rw4G018570 Rw6G029100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	85
AatII	GACGTC	1 cut(s)	95
AccB1I	GGYRCC	1 cut(s)	70
AccI	GTMKAC	1 cut(s)	89
AccII	CGCG	2 cut(s)	290, 420
AciI	CCGC	2 cut(s)	396, 420
AclWI	GGATC	2 cut(s)	345, 567
AcsI	RAATTY	1 cut(s)	631
AcuI	CTGAAG	1 cut(s)	558
AcyI	GRCGYC	2 cut(s)	71, 92
AdeI	CACNNNGTG	1 cut(s)	364
AfaI	GTAC	4 cut(s)	176, 567, 675, 820
AgsI	TTSAA	4 cut(s)	130, 196, 451, 638
AjnI	CCWGG	1 cut(s)	26
AleI	CACNNNNGTG	1 cut(s)	266
AluBI	AGCT	3 cut(s)	314, 325, 683
AluI	AGCT	3 cut(s)	314, 325, 683
Alw21I	GWGCWC	1 cut(s)	316
Alw26I	GTCTC	3 cut(s)	51, 98, 461
AlwI	GGATC	2 cut(s)	345, 567
AoxI	GGCC	6 cut(s)	29, 216, 397, 542, 583, 702
ApaI	GGGCCC	1 cut(s)	706
ApeKI	GCWGC	2 cut(s)	659, 680
ApoI	RAATTY	1 cut(s)	631
AspLEI	GCGC	3 cut(s)	73, 248, 286
AspS9I	GGNCC	7 cut(s)	216, 398, 542, 583, 702, 703, 716
AsuHPI	GGTGA	2 cut(s)	121, 681
AvaII	GGWCC	1 cut(s)	716
BaeGI	GKGCMC	1 cut(s)	706
BanI	GGYRCC	1 cut(s)	70
BanII	GRGCYC	2 cut(s)	316, 706
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	316
BbvI	GCAGC	2 cut(s)	646, 692
BccI	CCATC	3 cut(s)	227, 594, 638
BceAI	ACGGC	2 cut(s)	16, 253
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciT130I	CCWGG	1 cut(s)	28
BcoDI	GTCTC	3 cut(s)	51, 98, 461
BfaI	CTAG	2 cut(s)	605, 677
BfmI	CTRYAG	1 cut(s)	558
BfoI	RGCGCY	2 cut(s)	74, 249
BisI	GCNGC	3 cut(s)	397, 660, 681
BlsI	GCNGC	3 cut(s)	398, 661, 682
Bme1390I	CCNGG	1 cut(s)	28
Bme18I	GGWCC	1 cut(s)	716
BmgT120I	GGNCC	7 cut(s)	216, 398, 542, 583, 702, 703, 716
BmiI	GGNNCC	4 cut(s)	72, 400, 704, 768
BmrFI	CCNGG	1 cut(s)	28
BmsI	GCATC	1 cut(s)	776
BpiI	GAAGAC	1 cut(s)	27
BpmI	CTGGAG	3 cut(s)	10, 485, 753
BpuEI	CTTGAG	1 cut(s)	395
BsaAI	YACGTR	2 cut(s)	178, 264
BsaHI	GRCGYC	2 cut(s)	71, 92
BsaJI	CCNNGG	1 cut(s)	249
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bse118I	RCCGGY	1 cut(s)	67
Bse1I	ACTGG	2 cut(s)	124, 770
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	791
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	2 cut(s)	513, 752
BseNI	ACTGG	2 cut(s)	124, 770
BseSI	GKGCMC	1 cut(s)	706
BseXI	GCAGC	2 cut(s)	646, 692
Bsh1236I	CGCG	2 cut(s)	290, 420
BshFI	GGCC	6 cut(s)	31, 218, 399, 544, 585, 704
BshNI	GGYRCC	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	316
BsiSI	CCGG	2 cut(s)	50, 68
BslFI	GGGAC	1 cut(s)	130
BsmAI	GTCTC	3 cut(s)	51, 98, 461
BsmBI	CGTCTC	2 cut(s)	51, 98
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	6 cut(s)	31, 218, 399, 544, 585, 704
Bsp120I	GGGCCC	1 cut(s)	702
Bsp1286I	GDGCHC	2 cut(s)	316, 706
Bsp1407I	TGTACA	1 cut(s)	818
Bsp143I	GATC	6 cut(s)	96, 132, 337, 572, 686, 727
Bsp68I	TCGCGA	1 cut(s)	290
BspACI	CCGC	2 cut(s)	396, 420
BspANI	GGCC	6 cut(s)	31, 218, 399, 544, 585, 704
BspCNI	CTCAG	2 cut(s)	512, 751
BspFNI	CGCG	2 cut(s)	290, 420
BspLI	GGNNCC	4 cut(s)	72, 400, 704, 768
BspPI	GGATC	2 cut(s)	345, 567
BspT107I	GGYRCC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	67
BsrGI	TGTACA	1 cut(s)	818
BsrI	ACTGG	2 cut(s)	124, 770
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	6 cut(s)	96, 132, 337, 572, 686, 727
BssNI	GRCGYC	2 cut(s)	71, 92
Bst2UI	CCWGG	1 cut(s)	28
Bst4CI	ACNGT	2 cut(s)	109, 509
BstACI	GRCGYC	2 cut(s)	71, 92
BstAPI	GCANNNNNTGC	1 cut(s)	364
BstAUI	TGTACA	1 cut(s)	818
BstBAI	YACGTR	2 cut(s)	178, 264
BstC8I	GCNNGC	2 cut(s)	69, 288
BstDEI	CTNAG	2 cut(s)	499, 738
BstF5I	GGATG	1 cut(s)	791
BstFNI	CGCG	2 cut(s)	290, 420
BstH2I	RGCGCY	2 cut(s)	74, 249
BstHHI	GCGC	3 cut(s)	73, 248, 286
BstKTI	GATC	6 cut(s)	99, 135, 340, 575, 689, 730
BstMAI	GTCTC	3 cut(s)	51, 98, 461
BstMBI	GATC	6 cut(s)	96, 132, 337, 572, 686, 727
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstNI	CCWGG	1 cut(s)	28
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	26
BstSFI	CTRYAG	1 cut(s)	558
BstSLI	GKGCMC	1 cut(s)	706
BstUI	CGCG	2 cut(s)	290, 420
BstV1I	GCAGC	2 cut(s)	646, 692
BstV2I	GAAGAC	1 cut(s)	27
BstXI	CCANNNNNNTGG	2 cut(s)	593, 713
BsuRI	GGCC	6 cut(s)	31, 218, 399, 544, 585, 704
BtgZI	GCGATG	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	791
BtsIMutI	CAGTG	2 cut(s)	534, 746
BtuMI	TCGCGA	1 cut(s)	290
Cac8I	GCNNGC	2 cut(s)	69, 288
CfoI	GCGC	3 cut(s)	73, 248, 286
Cfr10I	RCCGGY	1 cut(s)	67
Cfr13I	GGNCC	7 cut(s)	216, 398, 542, 583, 702, 703, 716
CseI	GACGC	2 cut(s)	127, 337
Csp6I	GTAC	4 cut(s)	175, 566, 674, 819
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
CviAII	CATG	2 cut(s)	427, 580
CviQI	GTAC	4 cut(s)	175, 566, 674, 819
DdeI	CTNAG	2 cut(s)	499, 738
DinI	GGCGCC	1 cut(s)	72
DpnI	GATC	6 cut(s)	98, 134, 339, 574, 688, 729
DpnII	GATC	6 cut(s)	96, 132, 337, 572, 686, 727
DraIII	CACNNNGTG	1 cut(s)	364
DrdI	GACNNNNNNGTC	1 cut(s)	85
DseDI	GACNNNNNNGTC	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	314
Eco24I	GRGCYC	2 cut(s)	316, 706
Eco47I	GGWCC	1 cut(s)	716
Eco53kI	GAGCTC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	558
EcoICRI	GAGCTC	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	702
EcoRII	CCWGG	1 cut(s)	26
EcoT22I	ATGCAT	1 cut(s)	791
EcoT38I	GRGCYC	2 cut(s)	316, 706
EgeI	GGCGCC	1 cut(s)	72
EheI	GGCGCC	1 cut(s)	72
Esp3I	CGTCTC	2 cut(s)	51, 98
FaeI	CATG	2 cut(s)	430, 583
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	2 cut(s)	426, 579
FblI	GTMKAC	1 cut(s)	89
Fnu4HI	GCNGC	3 cut(s)	397, 660, 681
FokI	GGATG	1 cut(s)	798
FriOI	GRGCYC	2 cut(s)	316, 706
Fsp4HI	GCNGC	3 cut(s)	397, 660, 681
FspBI	CTAG	2 cut(s)	605, 677
GlaI	GCGC	3 cut(s)	72, 247, 285
GluI	GCNGC	3 cut(s)	397, 660, 681
GsuI	CTGGAG	3 cut(s)	10, 485, 753
HaeII	RGCGCY	2 cut(s)	74, 249
HaeIII	GGCC	6 cut(s)	31, 218, 399, 544, 585, 704
HapII	CCGG	2 cut(s)	50, 68
HgaI	GACGC	2 cut(s)	127, 337
HhaI	GCGC	3 cut(s)	73, 248, 286
Hin1I	GRCGYC	2 cut(s)	71, 92
Hin1II	CATG	2 cut(s)	430, 583
Hin6I	GCGC	3 cut(s)	71, 246, 284
HinP1I	GCGC	3 cut(s)	71, 246, 284
HincII	GTYRAC	2 cut(s)	90, 505
HindII	GTYRAC	2 cut(s)	90, 505
HpaII	CCGG	2 cut(s)	50, 68
HphI	GGTGA	2 cut(s)	121, 681
Hpy166II	GTNNAC	4 cut(s)	90, 112, 505, 819
Hpy188I	TCNGA	4 cut(s)	187, 342, 475, 732
Hpy188III	TCNNGA	5 cut(s)	130, 233, 289, 379, 464
Hpy8I	GTNNAC	4 cut(s)	90, 112, 505, 819
Hpy99I	CGWCG	5 cut(s)	79, 91, 94, 97, 239
HpyAV	CCTTC	2 cut(s)	290, 533
HpyCH4III	ACNGT	2 cut(s)	109, 509
HpyCH4IV	ACGT	3 cut(s)	92, 177, 263
HpyCH4V	TGCA	3 cut(s)	367, 744, 789
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
HpyF3I	CTNAG	2 cut(s)	499, 738
HpySE526I	ACGT	3 cut(s)	92, 177, 263
Hsp92I	GRCGYC	2 cut(s)	71, 92
Hsp92II	CATG	2 cut(s)	430, 583
HspAI	GCGC	3 cut(s)	71, 246, 284
KasI	GGCGCC	1 cut(s)	70
KroI	GCCGGC	1 cut(s)	67
KroNI	GCCGGC	1 cut(s)	69
Kzo9I	GATC	6 cut(s)	96, 132, 337, 572, 686, 727
LmnI	GCTCC	1 cut(s)	772
LpnPI	CCDG	9 cut(s)	13, 40, 63, 81, 137, 449, 685, 705, 783
Lsp1109I	GCAGC	2 cut(s)	646, 692
LweI	GCATC	1 cut(s)	776
MaeI	CTAG	2 cut(s)	605, 677
MaeII	ACGT	3 cut(s)	92, 177, 263
MaeIII	GTNAC	3 cut(s)	178, 434, 528
MalI	GATC	6 cut(s)	98, 134, 339, 574, 688, 729
MboI	GATC	6 cut(s)	96, 132, 337, 572, 686, 727
MboII	GAAGA	3 cut(s)	27, 30, 33
MhlI	GDGCHC	2 cut(s)	316, 706
MluCI	AATT	1 cut(s)	631
Mly113I	GGCGCC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	600
Mph1103I	ATGCAT	1 cut(s)	791
MreI	CGCCGGCG	1 cut(s)	67
MroNI	GCCGGC	1 cut(s)	67
MseI	TTAA	3 cut(s)	483, 777, 828
MslI	CAYNNNNRTG	1 cut(s)	266
MspI	CCGG	2 cut(s)	50, 68
MspR9I	CCNGG	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	28
MvnI	CGCG	2 cut(s)	290, 420
MwoI	GCNNNNNNNGC	1 cut(s)	364
NaeI	GCCGGC	1 cut(s)	69
NarI	GGCGCC	1 cut(s)	71
NdeII	GATC	6 cut(s)	96, 132, 337, 572, 686, 727
NgoMIV	GCCGGC	1 cut(s)	67
NlaIII	CATG	2 cut(s)	430, 583
NlaIV	GGNNCC	4 cut(s)	72, 400, 704, 768
NmeAIII	GCCGAG	1 cut(s)	274
NmuCI	GTSAC	2 cut(s)	178, 528
NruI	TCGCGA	1 cut(s)	290
NsiI	ATGCAT	1 cut(s)	791
NspI	RCATGY	1 cut(s)	430
OliI	CACNNNNGTG	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	5 cut(s)	50, 71, 83, 92, 183
PdiI	GCCGGC	1 cut(s)	69
PflFI	GACNNNGTC	1 cut(s)	58
PkrI	GCNGC	3 cut(s)	398, 661, 682
PluTI	GGCGCC	1 cut(s)	74
Ppu21I	YACGTR	2 cut(s)	178, 264
Psp124BI	GAGCTC	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
PspN4I	GGNNCC	4 cut(s)	72, 400, 704, 768
PspOMI	GGGCCC	1 cut(s)	702
PspPI	GGNCC	7 cut(s)	216, 398, 542, 583, 702, 703, 716
PsyI	GACNNNGTC	1 cut(s)	58
RruI	TCGCGA	1 cut(s)	290
RsaI	GTAC	4 cut(s)	176, 567, 675, 820
RsaNI	GTAC	4 cut(s)	175, 566, 674, 819
RseI	CAYNNNNRTG	1 cut(s)	266
SacI	GAGCTC	1 cut(s)	316
SalI	GTCGAC	1 cut(s)	88
SaqAI	TTAA	3 cut(s)	483, 777, 828
SatI	GCNGC	3 cut(s)	397, 660, 681
Sau3AI	GATC	6 cut(s)	96, 132, 337, 572, 686, 727
Sau96I	GGNCC	7 cut(s)	216, 398, 542, 583, 702, 703, 716
ScrFI	CCNGG	1 cut(s)	28
SduI	GDGCHC	2 cut(s)	316, 706
SfaNI	GCATC	1 cut(s)	776
SfcI	CTRYAG	1 cut(s)	558
SfoI	GGCGCC	1 cut(s)	72
SgrAI	CRCCGGYG	1 cut(s)	67
SgrDI	CGTCGACG	1 cut(s)	88
SinI	GGWCC	1 cut(s)	716
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	1 cut(s)	631
SsiI	CCGC	2 cut(s)	396, 420
SspDI	GGCGCC	1 cut(s)	70
SspMI	CTAG	2 cut(s)	605, 677
SstI	GAGCTC	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	109, 509
TaiI	ACGT	3 cut(s)	95, 180, 266
TaqI	TCGA	3 cut(s)	89, 95, 685
TasI	AATT	1 cut(s)	631
TatI	WGTACW	1 cut(s)	818
TauI	GCSGC	1 cut(s)	399
Tru1I	TTAA	3 cut(s)	483, 777, 828
Tru9I	TTAA	3 cut(s)	483, 777, 828
TscAI	CASTG	2 cut(s)	541, 746
TseFI	GTSAC	2 cut(s)	178, 528
TseI	GCWGC	2 cut(s)	659, 680
Tsp45I	GTSAC	2 cut(s)	178, 528
TspDTI	ATGAA	3 cut(s)	268, 737, 797
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	2 cut(s)	541, 746
Tth111I	GACNNNGTC	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	716
XapI	RAATTY	1 cut(s)	631
XceI	RCATGY	1 cut(s)	430
XmiI	GTMKAC	1 cut(s)	89
XspI	CTAG	2 cut(s)	605, 677
ZraI	GACGTC	1 cut(s)	93
Zsp2I	ATGCAT	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.