MD13G1181000.v1.1

BTB POZ and MATH domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
15083509 .. 15086633
3125 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1181000.v1.1.491

Sequence Viewer

Length: 1083 bp
ATGGACAGAATCGGGGTCCGCAATGAAACTCTAAAACACAGCTCGTTCCCACCGCCGCTGGCTCCGCCGGTTACGTGCTCGACGTCGTGCACGGAGACCGTAAATGGGTGCCACGAGTTTAAGATCAGTGGGTACTCCCTTGCCAAGGGTATGGGAATCGGTAAGTACGTCGCCTCCGATTCGTTTGTGGTGGGTGGGTACACGTGGGCTATATATTTCTACCCGGATGGCAAGAGTATCGAGGACAACGCCGGGTATGTGTCGGTGTTCATAGCTCTGGCCAGCGAGGGCACGGACGTCAGGGCGTTGTTCGAATTGACGCTTTTGGATCAGAGCGAGAGGCAACGGCACAAGGTGCATAGCCATTTTCTGAGGATGCTCGATGGCGGTCCTTATACGCTTAAATACCGCGGAAGCATGTGGGGTTATAAACGCTTCTACAAAAGAAGTCTTTTAGAGGGATCGGACTACCTTAAAGATGATTGCCTTATAATAAAATGTCGTGTTGGTGTTGTTAAGACGAATACAGAAGGACCTAAAACATACAATATCGCAGAACCACCTTCTAATATCGGCCAGCATTTTGGTAAGCTTTTAGAAAGTGGGAAGTTGACTGATGTAAGTTTCAAAGTTGACGAAGAAGTATTTGCTGCCCACAAAGTGGTGCTCGCAGCACGCTCACCTGTGTTCAAGGCACAACTTTTTGGTCCATTAAAAGATAAAAACACTGATTTCATAATAGTTGAAGACATTGAAGCTCCCGCATTTAAGGTATTACTTCACTTCATCTACTGGGATTCTCTACCAGACATGCAAGAGCTTGTGGGCCTGCTAAATTCAAGCTGGGCGTCTACAGTAATGGCCCAACATCTTCTGGCAGCGGCTGATCGCTATGCCCTCGAGAGGCTCAAACTGATGTGTGAGGCTAAACTTTGCGAAAATGTTGCCATAAATAATGTTGCAACAACGTTAGCCTTGGCAGAGCAACACCAATGTGAACAACTTAGAGCTGTATGCCTCAAATTTATTGCAGTGCCTGAAAATTTAAGAGGTAAACTTTTTTCTTTAACTGATTTGTTCTGA

Protein Analysis

361

Amino Acids

40.17

Weight (kDa)

6.79

Isoelectric Point (pI)

31.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 38 - 169 8.5e-31 MATH domain
BTB PF00651 195 - 314 1.2e-21 BTB/POZ domain
BACK_BPM_SPOP PF24570 319 - 350 2.9e-13 BPM/SPOP, BACK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 429, 491
AatII GACGTC 2 cut(s) 86, 300
AccB1I GGYRCC 1 cut(s) 108
AccB7I CCANNNNNTGG 1 cut(s) 661
AccI GTMKAC 1 cut(s) 851
AccII CGCG 1 cut(s) 411
AciI CCGC 9 cut(s) 19, 53, 56, 65, 387, 409, 411, 762, 881
AclI AACGTT 1 cut(s) 968
AclWI GGATC 2 cut(s) 336, 469
AcoI YGGCCR 2 cut(s) 279, 574
AcsI RAATTY 3 cut(s) 835, 1022, 1042
AcvI CACGTG 1 cut(s) 204
AcyI GRCGYC 3 cut(s) 83, 297, 848
AdeI CACNNNGTG 2 cut(s) 355, 661
AfaI GTAC 3 cut(s) 134, 167, 200
AfiI CCNNNNNNNGG 4 cut(s) 105, 145, 661, 903
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 5 cut(s) 628, 691, 746, 755, 840
AleI CACNNNNGTG 1 cut(s) 993
AluBI AGCT 7 cut(s) 42, 275, 592, 758, 820, 843, 1010
AluI AGCT 7 cut(s) 42, 275, 592, 758, 820, 843, 1010
Alw21I GWGCWC 3 cut(s) 80, 92, 669
Alw26I GTCTC 1 cut(s) 89
Alw44I GTGCAC 1 cut(s) 88
AlwI GGATC 2 cut(s) 336, 469
AlwNI CAGNNNCTG 2 cut(s) 884, 1037
Ama87I CYCGRG 1 cut(s) 899
AoxI GGCC 4 cut(s) 279, 574, 826, 861
ApaLI GTGCAC 1 cut(s) 88
ApeKI GCWGC 3 cut(s) 650, 671, 878
ApoI RAATTY 3 cut(s) 835, 1022, 1042
AspS9I GGNCC 6 cut(s) 16, 389, 533, 707, 826, 862
AsuC2I CCSGG 2 cut(s) 224, 253
AsuHPI GGTGA 1 cut(s) 672
AsuII TTCGAA 1 cut(s) 312
AvaI CYCGRG 1 cut(s) 899
AvaII GGWCC 4 cut(s) 16, 389, 533, 707
BaeGI GKGCMC 2 cut(s) 92, 293
BalI TGGCCA 1 cut(s) 281
BanI GGYRCC 1 cut(s) 108
BauI CACGAG 1 cut(s) 113
BbrPI CACGTG 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 753
Bbv12I GWGCWC 3 cut(s) 80, 92, 669
BbvI GCAGC 3 cut(s) 637, 683, 890
BccI CCATC 2 cut(s) 221, 377
BceAI ACGGC 1 cut(s) 362
BcgI CGANNNNNNTGC 4 cut(s) 220, 254, 926, 960
BcnI CCSGG 2 cut(s) 224, 253
BcoDI GTCTC 1 cut(s) 89
BfmI CTRYAG 1 cut(s) 852
BisI GCNGC 5 cut(s) 56, 651, 672, 879, 882
BlsI GCNGC 5 cut(s) 57, 652, 673, 880, 883
Bme1390I CCNGG 2 cut(s) 224, 253
Bme18I GGWCC 4 cut(s) 16, 389, 533, 707
BmeT110I CYCGRG 1 cut(s) 899
BmgT120I GGNCC 6 cut(s) 16, 389, 533, 707, 826, 862
BmiI GGNNCC 3 cut(s) 17, 63, 110
BmrFI CCNGG 2 cut(s) 224, 253
BmrI ACTGGG 1 cut(s) 802
BmsI GCATC 1 cut(s) 366
BmuI ACTGGG 1 cut(s) 802
BpiI GAAGAC 1 cut(s) 753
Bpu14I TTCGAA 1 cut(s) 312
BpuMI CCSGG 2 cut(s) 224, 253
BsaAI YACGTR 2 cut(s) 75, 204
BsaHI GRCGYC 3 cut(s) 83, 297, 848
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 3 cut(s) 144, 409, 975
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 4 cut(s) 105, 145, 661, 903
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 797
Bse3DI GCAATG 1 cut(s) 28
BseDI CCNNGG 3 cut(s) 144, 409, 975
BseGI GGATG 2 cut(s) 232, 381
BseLI CCNNNNNNNGG 4 cut(s) 105, 145, 661, 903
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 1 cut(s) 797
BseSI GKGCMC 2 cut(s) 92, 293
BseXI GCAGC 3 cut(s) 637, 683, 890
BseYI CCCAGC 1 cut(s) 843
Bsh1236I CGCG 1 cut(s) 411
BshFI GGCC 4 cut(s) 281, 576, 828, 863
BshNI GGYRCC 1 cut(s) 108
BsiHKAI GWGCWC 3 cut(s) 80, 92, 669
BsiHKCI CYCGRG 1 cut(s) 899
BsiSI CCGG 3 cut(s) 68, 224, 252
BslI CCNNNNNNNGG 4 cut(s) 105, 145, 661, 903
BsmAI GTCTC 1 cut(s) 89
BsnI GGCC 4 cut(s) 281, 576, 828, 863
Bso31I GGTCTC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 899
Bsp119I TTCGAA 1 cut(s) 312
Bsp1286I GDGCHC 4 cut(s) 80, 92, 293, 669
Bsp143I GATC 4 cut(s) 123, 328, 461, 886
BspACI CCGC 9 cut(s) 19, 53, 56, 65, 387, 409, 411, 762, 881
BspANI GGCC 4 cut(s) 281, 576, 828, 863
BspCNI CTCAG 1 cut(s) 363
BspFNI CGCG 1 cut(s) 411
BspLI GGNNCC 3 cut(s) 17, 63, 110
BspPI GGATC 2 cut(s) 336, 469
BspT104I TTCGAA 1 cut(s) 312
BspT107I GGYRCC 1 cut(s) 108
BspTNI GGTCTC 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 28
BsrFI RCCGGY 1 cut(s) 67
BsrI ACTGG 1 cut(s) 797
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 3 cut(s) 144, 409, 975
BssMI GATC 4 cut(s) 123, 328, 461, 886
BssNI GRCGYC 3 cut(s) 83, 297, 848
BssSI CACGAG 1 cut(s) 113
BssT1I CCWWGG 2 cut(s) 144, 975
Bst2BI CACGAG 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 100, 856
BstACI GRCGYC 3 cut(s) 83, 297, 848
BstAPI GCANNNNNTGC 1 cut(s) 355
BstBAI YACGTR 2 cut(s) 75, 204
BstBI TTCGAA 1 cut(s) 312
BstC8I GCNNGC 6 cut(s) 60, 283, 578, 669, 676, 830
BstDEI CTNAG 2 cut(s) 371, 1004
BstDSI CCRYGG 1 cut(s) 409
BstENI CCTNNNNNAGG 1 cut(s) 143
BstF5I GGATG 2 cut(s) 232, 381
BstFNI CGCG 1 cut(s) 411
BstKTI GATC 4 cut(s) 126, 331, 464, 889
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 4 cut(s) 123, 328, 461, 886
BstMWI GCNNNNNNNGC 2 cut(s) 64, 355
BstNSI RCATGY 2 cut(s) 421, 814
BstSCI CCNGG 2 cut(s) 222, 251
BstSFI CTRYAG 1 cut(s) 852
BstSLI GKGCMC 2 cut(s) 92, 293
BstUI CGCG 1 cut(s) 411
BstV1I GCAGC 3 cut(s) 637, 683, 890
BstV2I GAAGAC 1 cut(s) 753
BstXI CCANNNNNNTGG 2 cut(s) 151, 584
BsuRI GGCC 4 cut(s) 281, 576, 828, 863
BtgI CCRYGG 1 cut(s) 409
BtsCI GGATG 2 cut(s) 232, 381
BtsI GCAGTG 1 cut(s) 1038
BtsIMutI CAGTG 3 cut(s) 133, 726, 1038
Cac8I GCNNGC 6 cut(s) 60, 283, 578, 669, 676, 830
CaiI CAGNNNCTG 2 cut(s) 884, 1037
Cfr10I RCCGGY 1 cut(s) 67
Cfr13I GGNCC 6 cut(s) 16, 389, 533, 707, 826, 862
Cfr42I CCGCGG 1 cut(s) 412
CseI GACGC 2 cut(s) 328, 837
Csp6I GTAC 3 cut(s) 133, 166, 199
CviAII CATG 2 cut(s) 418, 811
CviQI GTAC 3 cut(s) 133, 166, 199
DdeI CTNAG 2 cut(s) 371, 1004
DpnI GATC 4 cut(s) 125, 330, 463, 888
DpnII GATC 4 cut(s) 123, 328, 461, 886
DraIII CACNNNGTG 2 cut(s) 355, 661
EaeI YGGCCR 2 cut(s) 279, 574
EciI GGCGGA 1 cut(s) 54
Eco130I CCWWGG 2 cut(s) 144, 975
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 4 cut(s) 16, 389, 533, 707
Eco72I CACGTG 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 899
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 533
EcoT14I CCWWGG 2 cut(s) 144, 975
ErhI CCWWGG 2 cut(s) 144, 975
FaeI CATG 2 cut(s) 421, 814
FatI CATG 2 cut(s) 417, 810
FauI CCCGC 1 cut(s) 769
FblI GTMKAC 1 cut(s) 851
Fnu4HI GCNGC 5 cut(s) 56, 651, 672, 879, 882
FokI GGATG 2 cut(s) 239, 388
Fsp4HI GCNGC 5 cut(s) 56, 651, 672, 879, 882
GluI GCNGC 5 cut(s) 56, 651, 672, 879, 882
GsaI CCCAGC 1 cut(s) 847
HaeIII GGCC 4 cut(s) 281, 576, 828, 863
HapII CCGG 3 cut(s) 68, 224, 252
HgaI GACGC 2 cut(s) 328, 837
Hin1I GRCGYC 3 cut(s) 83, 297, 848
Hin1II CATG 2 cut(s) 421, 814
HincII GTYRAC 2 cut(s) 612, 634
HindII GTYRAC 2 cut(s) 612, 634
HindIII AAGCTT 1 cut(s) 590
HinfI GANTC 4 cut(s) 9, 156, 179, 797
HpaII CCGG 3 cut(s) 68, 224, 252
HphI GGTGA 1 cut(s) 672
Hpy166II GTNNAC 7 cut(s) 90, 201, 612, 634, 852, 998, 1055
Hpy188I TCNGA 5 cut(s) 178, 333, 372, 466, 1082
Hpy188III TCNNGA 1 cut(s) 901
Hpy8I GTNNAC 7 cut(s) 90, 201, 612, 634, 852, 998, 1055
Hpy99I CGWCG 3 cut(s) 85, 88, 173
HpyAV CCTTC 2 cut(s) 524, 573
HpyCH4III ACNGT 2 cut(s) 100, 856
HpyCH4IV ACGT 6 cut(s) 74, 83, 168, 203, 297, 968
HpyCH4V TGCA 5 cut(s) 90, 358, 814, 962, 1031
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 355
HpyF3I CTNAG 2 cut(s) 371, 1004
HpySE526I ACGT 6 cut(s) 74, 83, 168, 203, 297, 968
Hsp92I GRCGYC 3 cut(s) 83, 297, 848
Hsp92II CATG 2 cut(s) 421, 814
KspI CCGCGG 1 cut(s) 412
Kzo9I GATC 4 cut(s) 123, 328, 461, 886
LmnI GCTCC 2 cut(s) 67, 763
Lsp1109I GCAGC 3 cut(s) 637, 683, 890
LweI GCATC 1 cut(s) 366
MaeII ACGT 6 cut(s) 74, 83, 168, 203, 297, 968
MaeIII GTNAC 1 cut(s) 70
MalI GATC 4 cut(s) 125, 330, 463, 888
MboI GATC 4 cut(s) 123, 328, 461, 886
MboII GAAGA 3 cut(s) 650, 758, 863
MhlI GDGCHC 4 cut(s) 80, 92, 293, 669
MlsI TGGCCA 1 cut(s) 281
MluCI AATT 4 cut(s) 314, 835, 1022, 1042
MluNI TGGCCA 1 cut(s) 281
Mox20I TGGCCA 1 cut(s) 281
MscI TGGCCA 1 cut(s) 281
MseI TTAA 8 cut(s) 120, 402, 474, 516, 713, 768, 1046, 1067
MslI CAYNNNNRTG 1 cut(s) 993
Msp20I TGGCCA 1 cut(s) 281
MspA1I CMGCKG 3 cut(s) 58, 411, 881
MspI CCGG 3 cut(s) 68, 224, 252
MspR9I CCNGG 2 cut(s) 224, 253
MvnI CGCG 1 cut(s) 411
MwoI GCNNNNNNNGC 2 cut(s) 64, 355
NciI CCSGG 2 cut(s) 224, 253
NdeII GATC 4 cut(s) 123, 328, 461, 886
NlaIII CATG 2 cut(s) 421, 814
NlaIV GGNNCC 3 cut(s) 17, 63, 110
NspI RCATGY 2 cut(s) 421, 814
NspV TTCGAA 1 cut(s) 312
OliI CACNNNNGTG 1 cut(s) 993
PaeR7I CTCGAG 1 cut(s) 899
PcsI WCGNNNNNNNCGW 3 cut(s) 80, 165, 174
PfeI GAWTC 4 cut(s) 9, 156, 179, 797
PflMI CCANNNNNTGG 1 cut(s) 661
PkrI GCNGC 5 cut(s) 57, 652, 673, 880, 883
PmaCI CACGTG 1 cut(s) 204
PmlI CACGTG 1 cut(s) 204
Ppu21I YACGTR 2 cut(s) 75, 204
PpuMI RGGWCCY 1 cut(s) 533
PsiI TTATAA 2 cut(s) 429, 491
Psp1406I AACGTT 1 cut(s) 968
Psp5II RGGWCCY 1 cut(s) 533
PspCI CACGTG 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 843
PspN4I GGNNCC 3 cut(s) 17, 63, 110
PspPI GGNCC 6 cut(s) 16, 389, 533, 707, 826, 862
PspPPI RGGWCCY 1 cut(s) 533
PstNI CAGNNNCTG 2 cut(s) 884, 1037
RsaI GTAC 3 cut(s) 134, 167, 200
RsaNI GTAC 3 cut(s) 133, 166, 199
RseI CAYNNNNRTG 1 cut(s) 993
SacII CCGCGG 1 cut(s) 412
SaqAI TTAA 8 cut(s) 120, 402, 474, 516, 713, 768, 1046, 1067
SatI GCNGC 5 cut(s) 56, 651, 672, 879, 882
Sau3AI GATC 4 cut(s) 123, 328, 461, 886
Sau96I GGNCC 6 cut(s) 16, 389, 533, 707, 826, 862
ScrFI CCNGG 2 cut(s) 224, 253
SduI GDGCHC 4 cut(s) 80, 92, 293, 669
SfaNI GCATC 1 cut(s) 366
SfcI CTRYAG 1 cut(s) 852
Sfr274I CTCGAG 1 cut(s) 899
Sfr303I CCGCGG 1 cut(s) 412
SfuI TTCGAA 1 cut(s) 312
SgrBI CCGCGG 1 cut(s) 412
SinI GGWCC 4 cut(s) 16, 389, 533, 707
SlaI CTCGAG 1 cut(s) 899
SmiMI CAYNNNNRTG 1 cut(s) 993
SmlI CTYRAG 1 cut(s) 899
SmoI CTYRAG 1 cut(s) 899
Sse9I AATT 4 cut(s) 314, 835, 1022, 1042
SsiI CCGC 9 cut(s) 19, 53, 56, 65, 387, 409, 411, 762, 881
StyD4I CCNGG 2 cut(s) 222, 251
StyI CCWWGG 2 cut(s) 144, 975
TaaI ACNGT 2 cut(s) 100, 856
TaiI ACGT 6 cut(s) 77, 86, 171, 206, 300, 971
TaqI TCGA 5 cut(s) 80, 240, 312, 381, 900
TasI AATT 4 cut(s) 314, 835, 1022, 1042
TauI GCSGC 2 cut(s) 58, 884
TfiI GAWTC 4 cut(s) 9, 156, 179, 797
Tru1I TTAA 8 cut(s) 120, 402, 474, 516, 713, 768, 1046, 1067
Tru9I TTAA 8 cut(s) 120, 402, 474, 516, 713, 768, 1046, 1067
TscAI CASTG 3 cut(s) 133, 733, 1038
TseI GCWGC 3 cut(s) 650, 671, 878
TspDTI ATGAA 4 cut(s) 39, 259, 724, 775
TspGWI ACGGA 2 cut(s) 107, 308
TspRI CASTG 3 cut(s) 133, 733, 1038
Van91I CCANNNNNTGG 1 cut(s) 661
VneI GTGCAC 1 cut(s) 88
VpaK11BI GGWCC 4 cut(s) 16, 389, 533, 707
XagI CCTNNNNNAGG 1 cut(s) 143
XapI RAATTY 3 cut(s) 835, 1022, 1042
XceI RCATGY 2 cut(s) 421, 814
XhoI CTCGAG 1 cut(s) 899
XmiI GTMKAC 1 cut(s) 851
ZraI GACGTC 2 cut(s) 84, 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.