Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002184

Physical Location & Seq

Genomic Coordinates Forward (+)

11381911 .. 11384244

Gene Structure 2334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g15620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGACAGAATCGGGGTCCGCAATGAAGCTTTAAAACACAGCTCGTCCCCACCGCCGCTGGCTCCGCCGGTTACGTGCTCGACGTCGTGCACGGAGACCGTAAATGGGTGCCACGAGTTTAAGATCAGTGGGTACTCCCTTGCCAAGGGTATGGGAATCGGTAAGTACGTCGCCTCCGATTCGTTTGTGGTGGGTGGGTACACGTGGGCTATATATTTCTACCCGGATGGCAAGAGCGTTGAGGACCACGCCGGGTATGTGTCGGTGTTCATAGCTCTGGCCAGCGAGGGCACCGACGTCAGGGCGTTGTTCGAATTGACGCTTTTGGATCAGAGCGAGAGGCAACGGCACAAGGTGCATAGCCATTTTCTGAGGATGCTCGATGGCGGTCCTTATACGCTTAAATACCGTGGAAGCATGTGGGGTTATAAACGCTTCTACAAAAGAAGTCTTTTAGAGGGATCGGACTACCTTAAAGATGATTGCCTTATAATAAAATGTCGTGTTGGTGTTGTTAAGACGAATACAGAAGGACCTAAAACATACAATATAGCAGAACCACCTTCCAATATCGGCCAGCATTTTGGTAAGCTTTTAGAAAGTGGGAAGTTGACTGATGTAAGTTTCAAAGTTGACGAAGAAGTATTTGCTGCCCACAAAGTGGTGCTCGCAGCACGCTCGCCTGTGTTCAAGGCACAACTTTTTGGTCCATTAAAAGATAAAAACACTGATTTCATAATAGTTGAAGACATTGAAGCTCCCGCATTTAAGGTATTACTTCACTTCATCTACTGGGATTCTCTACCAGACTTGCAAGAGCTTGTGGGGCTGCTAAATTCAAGCTGGGCGTCTACAGTAATGGCCCAACACCTTCTGGCAGCGGCTGATCGTTCAAAACATATATGCCCTCGAGAGGCTCAAACTGATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0031668 GO:0033554 GO:0042221 GO:0042631 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071470 GO:0071472 GO:0071496 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

311

Amino Acids

34.44

Weight (kDa)

6.83

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06190 AT3G06190 AT3G06190 AT3G06190 AT3G06190 AT5G19000 AT5G19000 AT5G19000
fragaria_vesca	FvH4_2g24040 FvH4_2g24040 FvH4_4g14240 FvH4_4g14240 FvH4_4g14240 FvH4_4g14240
malus_domestica	MD03G1269700.v1.1 MD11G1290500.v1.1 MD13G1181000.v1.1 MD16G1181700.v1.1
prunus_persica	Prupe.1G149100_v2.0.a1 Prupe.8G245800_v2.0.a1
pyrus_communis	pycom03g21500 pycom11g25780 pycom13g15620 pycom16g15250
rosa_chinensis	RchiOBHm_Chr4g0418941 RchiOBHm_Chr6g0291771
rosa_laevigata	RLG00000007840 RLG00000012086
rosa_multiflora	Rmu_sc0000935.1_g000060 Rmu_sc0002226.1_g000029 Rmu_sc0002713.1_g000011
rosa_roxburghii	Rroxscaffold_5G00362030 Rroxscaffold_7G00175770
rosa_rugosa	Rorug04G0155300 Rorug06G0221500
rosa_samantha	Rh4AG217300 Rh4BG213100 Rh6AG334300 Rh6BG341500 Rh6CG347500 Rh6DG334600
rosa_wichuraiana	Rw4G018570 Rw6G029100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	429, 491
AatII	GACGTC	2 cut(s)	86, 300
AccB1I	GGYRCC	2 cut(s)	108, 290
AccB7I	CCANNNNNTGG	1 cut(s)	661
AccI	GTMKAC	1 cut(s)	851
AciI	CCGC	7 cut(s)	19, 53, 56, 65, 387, 762, 881
AclWI	GGATC	2 cut(s)	336, 469
AcoI	YGGCCR	2 cut(s)	279, 574
AcsI	RAATTY	1 cut(s)	835
AcvI	CACGTG	1 cut(s)	204
AcyI	GRCGYC	3 cut(s)	83, 297, 848
AdeI	CACNNNGTG	2 cut(s)	355, 661
AfaI	GTAC	3 cut(s)	134, 167, 200
AfiI	CCNNNNNNNGG	5 cut(s)	105, 145, 300, 661, 913
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	6 cut(s)	628, 691, 746, 755, 840, 894
AluBI	AGCT	7 cut(s)	29, 42, 275, 592, 758, 820, 843
AluI	AGCT	7 cut(s)	29, 42, 275, 592, 758, 820, 843
Alw21I	GWGCWC	3 cut(s)	80, 92, 669
Alw26I	GTCTC	1 cut(s)	89
Alw44I	GTGCAC	1 cut(s)	88
AlwI	GGATC	2 cut(s)	336, 469
AlwNI	CAGNNNCTG	1 cut(s)	884
Ama87I	CYCGRG	1 cut(s)	909
AoxI	GGCC	3 cut(s)	279, 574, 861
ApaLI	GTGCAC	1 cut(s)	88
ApeKI	GCWGC	4 cut(s)	650, 671, 829, 878
ApoI	RAATTY	1 cut(s)	835
AspS9I	GGNCC	6 cut(s)	16, 244, 389, 533, 707, 862
AsuC2I	CCSGG	2 cut(s)	224, 253
AsuII	TTCGAA	1 cut(s)	312
AvaI	CYCGRG	1 cut(s)	909
AvaII	GGWCC	5 cut(s)	16, 244, 389, 533, 707
BaeGI	GKGCMC	2 cut(s)	92, 293
BalI	TGGCCA	1 cut(s)	281
BanI	GGYRCC	2 cut(s)	108, 290
BauI	CACGAG	1 cut(s)	113
BbrPI	CACGTG	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	753
Bbv12I	GWGCWC	3 cut(s)	80, 92, 669
BbvI	GCAGC	4 cut(s)	637, 683, 816, 890
BccI	CCATC	2 cut(s)	221, 377
BceAI	ACGGC	1 cut(s)	362
BcgI	CGANNNNNNTGC	2 cut(s)	660, 694
BcnI	CCSGG	2 cut(s)	224, 253
BcoDI	GTCTC	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	852
BisI	GCNGC	6 cut(s)	56, 651, 672, 830, 879, 882
BlsI	GCNGC	6 cut(s)	57, 652, 673, 831, 880, 883
Bme1390I	CCNGG	2 cut(s)	224, 253
Bme18I	GGWCC	5 cut(s)	16, 244, 389, 533, 707
BmeT110I	CYCGRG	1 cut(s)	909
BmgT120I	GGNCC	6 cut(s)	16, 244, 389, 533, 707, 862
BmiI	GGNNCC	4 cut(s)	17, 63, 110, 292
BmrFI	CCNGG	2 cut(s)	224, 253
BmrI	ACTGGG	1 cut(s)	802
BmsI	GCATC	1 cut(s)	366
BmuI	ACTGGG	1 cut(s)	802
BpiI	GAAGAC	1 cut(s)	753
Bpu14I	TTCGAA	1 cut(s)	312
BpuMI	CCSGG	2 cut(s)	224, 253
BsaAI	YACGTR	2 cut(s)	75, 204
BsaHI	GRCGYC	3 cut(s)	83, 297, 848
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	144, 409
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	5 cut(s)	105, 145, 300, 661, 913
Bse118I	RCCGGY	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	797
Bse3DI	GCAATG	1 cut(s)	28
BseDI	CCNNGG	2 cut(s)	144, 409
BseGI	GGATG	2 cut(s)	232, 381
BseLI	CCNNNNNNNGG	5 cut(s)	105, 145, 300, 661, 913
BseMI	GCAATG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	1 cut(s)	797
BseSI	GKGCMC	2 cut(s)	92, 293
BseXI	GCAGC	4 cut(s)	637, 683, 816, 890
BseYI	CCCAGC	1 cut(s)	843
BshFI	GGCC	3 cut(s)	281, 576, 863
BshNI	GGYRCC	2 cut(s)	108, 290
BsiHKAI	GWGCWC	3 cut(s)	80, 92, 669
BsiHKCI	CYCGRG	1 cut(s)	909
BsiSI	CCGG	3 cut(s)	68, 224, 252
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	5 cut(s)	105, 145, 300, 661, 913
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	3 cut(s)	281, 576, 863
Bso31I	GGTCTC	1 cut(s)	89
BsoBI	CYCGRG	1 cut(s)	909
Bsp119I	TTCGAA	1 cut(s)	312
Bsp1286I	GDGCHC	4 cut(s)	80, 92, 293, 669
Bsp143I	GATC	4 cut(s)	123, 328, 461, 886
BspACI	CCGC	7 cut(s)	19, 53, 56, 65, 387, 762, 881
BspANI	GGCC	3 cut(s)	281, 576, 863
BspCNI	CTCAG	1 cut(s)	363
BspLI	GGNNCC	4 cut(s)	17, 63, 110, 292
BspPI	GGATC	2 cut(s)	336, 469
BspT104I	TTCGAA	1 cut(s)	312
BspT107I	GGYRCC	2 cut(s)	108, 290
BspTNI	GGTCTC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	797
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	2 cut(s)	144, 409
BssMI	GATC	4 cut(s)	123, 328, 461, 886
BssNI	GRCGYC	3 cut(s)	83, 297, 848
BssSI	CACGAG	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	113
Bst4CI	ACNGT	3 cut(s)	100, 410, 856
BstACI	GRCGYC	3 cut(s)	83, 297, 848
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstBAI	YACGTR	2 cut(s)	75, 204
BstBI	TTCGAA	1 cut(s)	312
BstC8I	GCNNGC	6 cut(s)	60, 283, 578, 669, 676, 680
BstDEI	CTNAG	1 cut(s)	371
BstDSI	CCRYGG	1 cut(s)	409
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	232, 381
BstKTI	GATC	4 cut(s)	126, 331, 464, 889
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	4 cut(s)	123, 328, 461, 886
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 355, 826
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	2 cut(s)	222, 251
BstSFI	CTRYAG	1 cut(s)	852
BstSLI	GKGCMC	2 cut(s)	92, 293
BstV1I	GCAGC	4 cut(s)	637, 683, 816, 890
BstV2I	GAAGAC	1 cut(s)	753
BstXI	CCANNNNNNTGG	2 cut(s)	151, 584
BsuRI	GGCC	3 cut(s)	281, 576, 863
BtgI	CCRYGG	1 cut(s)	409
BtsCI	GGATG	2 cut(s)	232, 381
BtsIMutI	CAGTG	2 cut(s)	133, 726
Cac8I	GCNNGC	6 cut(s)	60, 283, 578, 669, 676, 680
CaiI	CAGNNNCTG	1 cut(s)	884
Cfr10I	RCCGGY	1 cut(s)	67
Cfr13I	GGNCC	6 cut(s)	16, 244, 389, 533, 707, 862
CseI	GACGC	2 cut(s)	328, 837
Csp6I	GTAC	3 cut(s)	133, 166, 199
CviAII	CATG	1 cut(s)	418
CviQI	GTAC	3 cut(s)	133, 166, 199
DdeI	CTNAG	1 cut(s)	371
DpnI	GATC	4 cut(s)	125, 330, 463, 888
DpnII	GATC	4 cut(s)	123, 328, 461, 886
DraI	TTTAAA	1 cut(s)	33
DraIII	CACNNNGTG	2 cut(s)	355, 661
EaeI	YGGCCR	2 cut(s)	279, 574
EciI	GGCGGA	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	89
Eco47I	GGWCC	5 cut(s)	16, 244, 389, 533, 707
Eco72I	CACGTG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	909
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	1 cut(s)	421
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	1 cut(s)	417
FauI	CCCGC	1 cut(s)	769
FblI	GTMKAC	1 cut(s)	851
Fnu4HI	GCNGC	6 cut(s)	56, 651, 672, 830, 879, 882
FokI	GGATG	2 cut(s)	239, 388
Fsp4HI	GCNGC	6 cut(s)	56, 651, 672, 830, 879, 882
GluI	GCNGC	6 cut(s)	56, 651, 672, 830, 879, 882
GsaI	CCCAGC	1 cut(s)	847
HaeIII	GGCC	3 cut(s)	281, 576, 863
HapII	CCGG	3 cut(s)	68, 224, 252
HgaI	GACGC	2 cut(s)	328, 837
Hin1I	GRCGYC	3 cut(s)	83, 297, 848
Hin1II	CATG	1 cut(s)	421
HincII	GTYRAC	2 cut(s)	612, 634
HindII	GTYRAC	2 cut(s)	612, 634
HindIII	AAGCTT	2 cut(s)	27, 590
HinfI	GANTC	4 cut(s)	9, 156, 179, 797
HpaII	CCGG	3 cut(s)	68, 224, 252
Hpy166II	GTNNAC	5 cut(s)	90, 201, 612, 634, 852
Hpy188I	TCNGA	4 cut(s)	178, 333, 372, 466
Hpy188III	TCNNGA	1 cut(s)	911
Hpy8I	GTNNAC	5 cut(s)	90, 201, 612, 634, 852
Hpy99I	CGWCG	4 cut(s)	85, 88, 173, 299
HpyAV	CCTTC	3 cut(s)	524, 573, 881
HpyCH4III	ACNGT	3 cut(s)	100, 410, 856
HpyCH4IV	ACGT	5 cut(s)	74, 83, 168, 203, 297
HpyCH4V	TGCA	3 cut(s)	90, 358, 814
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 355, 826
HpyF3I	CTNAG	1 cut(s)	371
HpySE526I	ACGT	5 cut(s)	74, 83, 168, 203, 297
Hsp92I	GRCGYC	3 cut(s)	83, 297, 848
Hsp92II	CATG	1 cut(s)	421
Kzo9I	GATC	4 cut(s)	123, 328, 461, 886
LmnI	GCTCC	2 cut(s)	67, 763
Lsp1109I	GCAGC	4 cut(s)	637, 683, 816, 890
LweI	GCATC	1 cut(s)	366
MaeII	ACGT	5 cut(s)	74, 83, 168, 203, 297
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	4 cut(s)	125, 330, 463, 888
MboI	GATC	4 cut(s)	123, 328, 461, 886
MboII	GAAGA	2 cut(s)	650, 758
MhlI	GDGCHC	4 cut(s)	80, 92, 293, 669
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	2 cut(s)	314, 835
MluNI	TGGCCA	1 cut(s)	281
MnlI	CCTC	8 cut(s)	184, 235, 280, 333, 366, 451, 907, 918
Mox20I	TGGCCA	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	7 cut(s)	32, 120, 402, 474, 516, 713, 768
Msp20I	TGGCCA	1 cut(s)	281
MspA1I	CMGCKG	2 cut(s)	58, 881
MspI	CCGG	3 cut(s)	68, 224, 252
MspR9I	CCNGG	2 cut(s)	224, 253
MwoI	GCNNNNNNNGC	3 cut(s)	64, 355, 826
NciI	CCSGG	2 cut(s)	224, 253
NdeII	GATC	4 cut(s)	123, 328, 461, 886
NlaIII	CATG	1 cut(s)	421
NlaIV	GGNNCC	4 cut(s)	17, 63, 110, 292
NspI	RCATGY	1 cut(s)	421
NspV	TTCGAA	1 cut(s)	312
PaeR7I	CTCGAG	1 cut(s)	909
PcsI	WCGNNNNNNNCGW	3 cut(s)	80, 165, 174
PfeI	GAWTC	4 cut(s)	9, 156, 179, 797
PflMI	CCANNNNNTGG	1 cut(s)	661
PkrI	GCNGC	6 cut(s)	57, 652, 673, 831, 880, 883
PmaCI	CACGTG	1 cut(s)	204
PmlI	CACGTG	1 cut(s)	204
Ppu21I	YACGTR	2 cut(s)	75, 204
PpuMI	RGGWCCY	1 cut(s)	533
PsiI	TTATAA	2 cut(s)	429, 491
Psp5II	RGGWCCY	1 cut(s)	533
PspCI	CACGTG	1 cut(s)	204
PspFI	CCCAGC	1 cut(s)	843
PspN4I	GGNNCC	4 cut(s)	17, 63, 110, 292
PspPI	GGNCC	6 cut(s)	16, 244, 389, 533, 707, 862
PspPPI	RGGWCCY	1 cut(s)	533
PstNI	CAGNNNCTG	1 cut(s)	884
RsaI	GTAC	3 cut(s)	134, 167, 200
RsaNI	GTAC	3 cut(s)	133, 166, 199
SaqAI	TTAA	7 cut(s)	32, 120, 402, 474, 516, 713, 768
SatI	GCNGC	6 cut(s)	56, 651, 672, 830, 879, 882
Sau3AI	GATC	4 cut(s)	123, 328, 461, 886
Sau96I	GGNCC	6 cut(s)	16, 244, 389, 533, 707, 862
ScrFI	CCNGG	2 cut(s)	224, 253
SduI	GDGCHC	4 cut(s)	80, 92, 293, 669
SfaNI	GCATC	1 cut(s)	366
SfcI	CTRYAG	1 cut(s)	852
Sfr274I	CTCGAG	1 cut(s)	909
SfuI	TTCGAA	1 cut(s)	312
SinI	GGWCC	5 cut(s)	16, 244, 389, 533, 707
SlaI	CTCGAG	1 cut(s)	909
SmlI	CTYRAG	1 cut(s)	909
SmoI	CTYRAG	1 cut(s)	909
Sse9I	AATT	2 cut(s)	314, 835
SsiI	CCGC	7 cut(s)	19, 53, 56, 65, 387, 762, 881
StyD4I	CCNGG	2 cut(s)	222, 251
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	3 cut(s)	100, 410, 856
TaiI	ACGT	5 cut(s)	77, 86, 171, 206, 300
TaqI	TCGA	4 cut(s)	80, 312, 381, 910
TasI	AATT	2 cut(s)	314, 835
TauI	GCSGC	2 cut(s)	58, 884
TfiI	GAWTC	4 cut(s)	9, 156, 179, 797
Tru1I	TTAA	7 cut(s)	32, 120, 402, 474, 516, 713, 768
Tru9I	TTAA	7 cut(s)	32, 120, 402, 474, 516, 713, 768
TscAI	CASTG	2 cut(s)	133, 733
TseI	GCWGC	4 cut(s)	650, 671, 829, 878
TspDTI	ATGAA	4 cut(s)	39, 259, 724, 775
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	2 cut(s)	133, 733
Van91I	CCANNNNNTGG	1 cut(s)	661
VneI	GTGCAC	1 cut(s)	88
VpaK11BI	GGWCC	5 cut(s)	16, 244, 389, 533, 707
XagI	CCTNNNNNAGG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	835
XceI	RCATGY	1 cut(s)	421
XhoI	CTCGAG	1 cut(s)	909
XmiI	GTMKAC	1 cut(s)	851
ZraI	GACGTC	2 cut(s)	84, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.