Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008255

Physical Location & Seq

Genomic Coordinates Forward (+)

2132758 .. 2134665

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGATTCCAATTGGATCAATTGTCCCTCTGTTTTCTCCTCATCCTCTTCTTCTTCCAGACGCTGTCAATCCCGATCAGACTTGTATTTAGGAGGAGGGTACGAGGATCTTGAAGGAGAAGACGATTTGAAGGCAGAGTTTATATGCCCTTTTTGCGCTGAAGATTTTGACATTGTTGGGCTTTGTTGTCACATTGATGAAGAACATCCTGTTGAAGCCAAGAATGGGGTCTGTCCTGTATGCACTAAGAGGGTGGGATTGGATATCGTTGGCCATATTACGACGCAACATGCGAATTTCTTTAAGGTACAGCGAAGGAGAAGGTTGCGAAGAGGAGGATATAGCTCTACCTATCTCGCCTTGAAAAAGGAACTCCGGGAAGCAAACCTACAGTCTCTTCTTGGTGGATCTTCAAGTTTCACTTCTTCAACCAATATCGATTCTGATCCGTTGCTGTCATCCTTTATGTTTAATTCTCCTTCAGTGAACCAGTCTGCAAACAAATCTGCTACACCTGTGACTGTAGGAAACGCGGCTACAAAAGTCTCGATTAAGGAATCTCTCAAAAGAGACATTCAAGAAGCTCCACTTTCAGGTGAAGATCAGGAGAAGGCGAAAAAGAGTGAGTTTGTGCGAGGCTTGTTGTTGTCAACCATGCTTGAAGACGATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

224

Amino Acids

24.65

Weight (kDa)

5.47

Isoelectric Point (pI)

68.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	46 - 77	2.7e-11	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	130 - 229	4e-31	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06760 AT3G06760 AT5G49230 AT5G49230
fragaria_vesca	FvH4_4g19190
malus_domestica	MD13G1160200.v1.1 MD16G1159500.v1.1
prunus_persica	Prupe.1G126600_v2.0.a1 Prupe.1G126600_v2.0.a1 Prupe.1G126700_v2.0.a1
pyrus_communis	pycom13g13630
rosa_chinensis	RchiOBHm_Chr4g0424161 RchiOBHm_Chr4g0424171
rosa_laevigata	RLG00000007500
rosa_multiflora	Rmu_sc0002260.1_g000044 Rmu_sc0038176.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366140
rosa_rugosa	Rorug04G0193500
rosa_samantha	Rh4AG251400 Rh4BG256500 Rh4CG267400 Rh4DG251100
rosa_wichuraiana	Rw4G021680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	533
AciI	CCGC	1 cut(s)	533
AclWI	GGATC	4 cut(s)	23, 114, 415, 440
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	295
AcuI	CTGAAG	2 cut(s)	180, 465
AfaI	GTAC	2 cut(s)	101, 309
AfiI	CCNNNNNNNGG	2 cut(s)	225, 593
AgsI	TTSAA	8 cut(s)	113, 130, 215, 364, 414, 429, 578, 662
AluBI	AGCT	2 cut(s)	345, 584
AluI	AGCT	2 cut(s)	345, 584
Alw26I	GTCTC	3 cut(s)	399, 550, 564
AlwI	GGATC	4 cut(s)	23, 114, 415, 440
AlwNI	CAGNNNCTG	1 cut(s)	63
AoxI	GGCC	1 cut(s)	271
ApoI	RAATTY	1 cut(s)	295
ArsI	GACNNNNNNTTYG	2 cut(s)	377, 409
AspLEI	GCGC	1 cut(s)	158
AsuC2I	CCSGG	1 cut(s)	377
AsuHPI	GGTGA	1 cut(s)	608
BalI	TGGCCA	1 cut(s)	273
BarI	GAAGNNNNNNTAC	2 cut(s)	372, 404
BbsI	GAAGAC	2 cut(s)	126, 669
BcnI	CCSGG	1 cut(s)	377
BcoDI	GTCTC	3 cut(s)	399, 550, 564
BfmI	CTRYAG	2 cut(s)	389, 522
BisI	GCNGC	1 cut(s)	534
BlsI	GCNGC	1 cut(s)	535
Bme1390I	CCNGG	1 cut(s)	377
BmrFI	CCNGG	1 cut(s)	377
BpiI	GAAGAC	2 cut(s)	126, 669
BpuMI	CCSGG	1 cut(s)	377
Bsa29I	ATCGAT	1 cut(s)	438
BsaBI	GATNNNNATC	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 593
Bse1I	ACTGG	1 cut(s)	490
Bse8I	GATNNNNATC	1 cut(s)	444
BseCI	ATCGAT	1 cut(s)	438
BseGI	GGATG	3 cut(s)	41, 205, 458
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	2 cut(s)	225, 593
BseNI	ACTGG	1 cut(s)	490
BseRI	GAGGAG	3 cut(s)	28, 108, 348
Bsh1236I	CGCG	1 cut(s)	533
BshFI	GGCC	1 cut(s)	273
BshVI	ATCGAT	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	376
BslFI	GGGAC	1 cut(s)	9
BslI	CCNNNNNNNGG	2 cut(s)	225, 593
BsmAI	GTCTC	3 cut(s)	399, 550, 564
BsmFI	GGGAC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	273
Bsp143I	GATC	6 cut(s)	15, 74, 106, 407, 445, 601
BspACI	CCGC	1 cut(s)	533
BspANI	GGCC	1 cut(s)	273
BspDI	ATCGAT	1 cut(s)	438
BspFNI	CGCG	1 cut(s)	533
BspPI	GGATC	4 cut(s)	23, 114, 415, 440
BsrI	ACTGG	1 cut(s)	490
BssMI	GATC	6 cut(s)	15, 74, 106, 407, 445, 601
Bst4CI	ACNGT	2 cut(s)	393, 523
Bst6I	CTCTTC	3 cut(s)	52, 325, 402
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	3 cut(s)	41, 205, 458
BstFNI	CGCG	1 cut(s)	533
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	6 cut(s)	18, 77, 109, 410, 448, 604
BstMAI	GTCTC	3 cut(s)	399, 550, 564
BstMBI	GATC	6 cut(s)	15, 74, 106, 407, 445, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	153
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	375
BstSFI	CTRYAG	2 cut(s)	389, 522
BstUI	CGCG	1 cut(s)	533
BstV2I	GAAGAC	2 cut(s)	126, 669
BstX2I	RGATCY	2 cut(s)	106, 407
BstYI	RGATCY	2 cut(s)	106, 407
Bsu15I	ATCGAT	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	273
BsuTUI	ATCGAT	1 cut(s)	438
BtsCI	GGATG	3 cut(s)	41, 205, 458
BtsIMutI	CAGTG	1 cut(s)	489
CaiI	CAGNNNCTG	1 cut(s)	63
CfoI	GCGC	1 cut(s)	158
ClaI	ATCGAT	1 cut(s)	438
CseI	GACGC	2 cut(s)	69, 292
Csp6I	GTAC	2 cut(s)	100, 308
CviAII	CATG	2 cut(s)	290, 655
CviJI	RGCY	7 cut(s)	181, 218, 273, 345, 536, 584, 639
CviKI_1	RGCY	7 cut(s)	181, 218, 273, 345, 536, 584, 639
CviQI	GTAC	2 cut(s)	100, 308
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	6 cut(s)	17, 76, 108, 409, 447, 603
DpnII	GATC	6 cut(s)	15, 74, 106, 407, 445, 601
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	3 cut(s)	52, 325, 402
EarI	CTCTTC	3 cut(s)	52, 325, 402
Eco32I	GATATC	1 cut(s)	265
Eco57I	CTGAAG	2 cut(s)	180, 465
EcoRV	GATATC	1 cut(s)	265
FaeI	CATG	2 cut(s)	293, 658
FaiI	YATR	8 cut(s)	143, 145, 241, 276, 291, 342, 467, 656
FalI	AAGNNNNNCTT	4 cut(s)	406, 438, 573, 605
FaqI	GGGAC	1 cut(s)	9
FatI	CATG	2 cut(s)	289, 654
Fnu4HI	GCNGC	1 cut(s)	534
FokI	GGATG	3 cut(s)	28, 192, 445
Fsp4HI	GCNGC	1 cut(s)	534
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	534
HaeIII	GGCC	1 cut(s)	273
HapII	CCGG	1 cut(s)	376
HgaI	GACGC	2 cut(s)	69, 292
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	2 cut(s)	293, 658
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HincII	GTYRAC	1 cut(s)	651
HindII	GTYRAC	1 cut(s)	651
HinfI	GANTC	3 cut(s)	5, 440, 557
HpaII	CCGG	1 cut(s)	376
HphI	GGTGA	1 cut(s)	608
Hpy166II	GTNNAC	2 cut(s)	487, 651
Hpy188I	TCNGA	2 cut(s)	79, 445
Hpy188III	TCNNGA	6 cut(s)	57, 72, 110, 547, 578, 605
Hpy8I	GTNNAC	2 cut(s)	487, 651
Hpy99I	CGWCG	1 cut(s)	286
HpyAV	CCTTC	6 cut(s)	107, 124, 309, 315, 489, 604
HpyCH4III	ACNGT	2 cut(s)	393, 523
HpyCH4V	TGCA	2 cut(s)	243, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	153
HpyF3I	CTNAG	1 cut(s)	246
Hsp92II	CATG	2 cut(s)	293, 658
HspAI	GCGC	1 cut(s)	156
Kzo9I	GATC	6 cut(s)	15, 74, 106, 407, 445, 601
LmnI	GCTCC	1 cut(s)	589
LpnPI	CCDG	8 cut(s)	70, 222, 249, 389, 503, 528, 579, 590
MaeIII	GTNAC	2 cut(s)	188, 517
MalI	GATC	6 cut(s)	17, 76, 108, 409, 447, 603
MboI	GATC	6 cut(s)	15, 74, 106, 407, 445, 601
MfeI	CAATTG	2 cut(s)	10, 19
MflI	RGATCY	2 cut(s)	106, 407
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	4 cut(s)	10, 19, 295, 472
MluNI	TGGCCA	1 cut(s)	273
Mox20I	TGGCCA	1 cut(s)	273
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	3 cut(s)	303, 471, 552
MslI	CAYNNNNRTG	1 cut(s)	195
Msp20I	TGGCCA	1 cut(s)	273
MspI	CCGG	1 cut(s)	376
MspR9I	CCNGG	1 cut(s)	377
MunI	CAATTG	2 cut(s)	10, 19
MvnI	CGCG	1 cut(s)	533
MwoI	GCNNNNNNNGC	1 cut(s)	153
NciI	CCSGG	1 cut(s)	377
NdeII	GATC	6 cut(s)	15, 74, 106, 407, 445, 601
NlaIII	CATG	2 cut(s)	293, 658
NmuCI	GTSAC	2 cut(s)	188, 517
NspI	RCATGY	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	1 cut(s)	290
PfeI	GAWTC	3 cut(s)	5, 440, 557
PflFI	GACNNNGTC	1 cut(s)	63
PfoI	TCCNGGA	1 cut(s)	375
PkrI	GCNGC	1 cut(s)	535
PstNI	CAGNNNCTG	1 cut(s)	63
PsuI	RGATCY	2 cut(s)	106, 407
PsyI	GACNNNGTC	1 cut(s)	63
RsaI	GTAC	2 cut(s)	101, 309
RsaNI	GTAC	2 cut(s)	100, 308
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	3 cut(s)	303, 471, 552
SatI	GCNGC	1 cut(s)	534
Sau3AI	GATC	6 cut(s)	15, 74, 106, 407, 445, 601
ScrFI	CCNGG	1 cut(s)	377
SetI	ASST	8 cut(s)	309, 326, 347, 353, 390, 517, 586, 598
SfcI	CTRYAG	2 cut(s)	389, 522
SmiMI	CAYNNNNRTG	1 cut(s)	195
Sse9I	AATT	4 cut(s)	10, 19, 295, 472
SsiI	CCGC	1 cut(s)	533
StyD4I	CCNGG	1 cut(s)	375
TaaI	ACNGT	2 cut(s)	393, 523
TaqI	TCGA	2 cut(s)	438, 548
TasI	AATT	4 cut(s)	10, 19, 295, 472
TauI	GCSGC	1 cut(s)	536
TfiI	GAWTC	3 cut(s)	5, 440, 557
Tru1I	TTAA	3 cut(s)	303, 471, 552
Tru9I	TTAA	3 cut(s)	303, 471, 552
TscAI	CASTG	1 cut(s)	489
TseFI	GTSAC	2 cut(s)	188, 517
Tsp45I	GTSAC	2 cut(s)	188, 517
TspDTI	ATGAA	1 cut(s)	213
TspGWI	ACGGA	1 cut(s)	438
TspRI	CASTG	1 cut(s)	489
Tth111I	GACNNNGTC	1 cut(s)	63
XapI	RAATTY	1 cut(s)	295
XceI	RCATGY	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.