Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038176.1

Orthogroup ID

OG0008255

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1144

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038176.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 274 bp

atggactctgattcgtggagcaatctgttctcgtcctcgaacgcgaggcggtaccaatctcgatccgatctgttcggacacgaggaaatagagggagacgatgagataaaggctgagtttttgtgccccttctgcgcggaggatttcgatgttgttgggctttgttgtcacatcgatgaggaacatcccgtcgaggctaagaatggggtctgtccagtttgtgcaaagagggtgggatcaaatcttgtcacccatattaccacacaacatggga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

91

Amino Acids

10.13

Weight (kDa)

4.64

Isoelectric Point (pI)

73.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06760 AT3G06760 AT5G49230 AT5G49230
fragaria_vesca	FvH4_4g19190
malus_domestica	MD13G1160200.v1.1 MD16G1159500.v1.1
prunus_persica	Prupe.1G126600_v2.0.a1 Prupe.1G126600_v2.0.a1 Prupe.1G126700_v2.0.a1
pyrus_communis	pycom13g13630
rosa_chinensis	RchiOBHm_Chr4g0424161 RchiOBHm_Chr4g0424171
rosa_laevigata	RLG00000007500
rosa_multiflora	Rmu_sc0002260.1_g000044 Rmu_sc0038176.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366140
rosa_rugosa	Rorug04G0193500
rosa_samantha	Rh4AG251400 Rh4BG256500 Rh4CG267400 Rh4DG251100
rosa_wichuraiana	Rw4G021680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	51
AccB1I	GGYRCC	1 cut(s)	51
AccII	CGCG	2 cut(s)	44, 137
AciI	CCGC	2 cut(s)	49, 137
AclWI	GGATC	2 cut(s)	57, 244
AfaI	GTAC	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	2 cut(s)	57, 244
Asp718I	GGTACC	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	241
BaeGI	GKGCMC	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	51
BauI	CACGAG	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	90
BmiI	GGNNCC	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	215
BseCI	ATCGAT	1 cut(s)	174
BseGI	GGATG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	215
BseSI	GKGCMC	1 cut(s)	128
Bsh1236I	CGCG	2 cut(s)	44, 137
BshNI	GGYRCC	1 cut(s)	51
BshVI	ATCGAT	1 cut(s)	174
BsmAI	GTCTC	1 cut(s)	90
BsmBI	CGTCTC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	62, 67, 236
BspACI	CCGC	2 cut(s)	49, 137
BspCNI	CTCAG	1 cut(s)	106
BspDI	ATCGAT	1 cut(s)	174
BspFNI	CGCG	2 cut(s)	44, 137
BspLI	GGNNCC	1 cut(s)	53
BspPI	GGATC	2 cut(s)	57, 244
BspT107I	GGYRCC	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	215
BssMI	GATC	3 cut(s)	62, 67, 236
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	114, 198
BstF5I	GGATG	1 cut(s)	184
BstFNI	CGCG	2 cut(s)	44, 137
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	3 cut(s)	65, 70, 239
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	3 cut(s)	62, 67, 236
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstSLI	GKGCMC	1 cut(s)	128
BstUI	CGCG	2 cut(s)	44, 137
Bsu15I	ATCGAT	1 cut(s)	174
BsuTUI	ATCGAT	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	184
CfoI	GCGC	1 cut(s)	137
ClaI	ATCGAT	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	52
CspCI	CAANNNNNGTGG	2 cut(s)	213, 248
CviAII	CATG	1 cut(s)	269
CviJI	RGCY	3 cut(s)	113, 160, 197
CviKI_1	RGCY	3 cut(s)	113, 160, 197
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	2 cut(s)	114, 198
DpnI	GATC	3 cut(s)	64, 69, 238
DpnII	GATC	3 cut(s)	62, 67, 236
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	1 cut(s)	272
FaiI	YATR	2 cut(s)	255, 270
FatI	CATG	1 cut(s)	268
FokI	GGATG	1 cut(s)	171
GlaI	GCGC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	1 cut(s)	272
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HinfI	GANTC	2 cut(s)	5, 11
HphI	GGTGA	1 cut(s)	241
Hpy188I	TCNGA	3 cut(s)	10, 67, 77
Hpy188III	TCNNGA	1 cut(s)	60
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	139
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	2 cut(s)	114, 198
Hsp92II	CATG	1 cut(s)	272
HspAI	GCGC	1 cut(s)	135
KpnI	GGTACC	1 cut(s)	55
Kzo9I	GATC	3 cut(s)	62, 67, 236
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	167, 247
MalI	GATC	3 cut(s)	64, 69, 238
MboI	GATC	3 cut(s)	62, 67, 236
MhlI	GDGCHC	1 cut(s)	128
MnlI	CCTC	8 cut(s)	39, 46, 76, 85, 133, 172, 187, 222
MslI	CAYNNNNRTG	1 cut(s)	174
MvnI	CGCG	2 cut(s)	44, 137
MwoI	GCNNNNNNNGC	1 cut(s)	132
NdeII	GATC	3 cut(s)	62, 67, 236
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	1 cut(s)	53
NmuCI	GTSAC	2 cut(s)	167, 247
PfeI	GAWTC	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	53
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	174
Sau3AI	GATC	3 cut(s)	62, 67, 236
SduI	GDGCHC	1 cut(s)	128
SmiMI	CAYNNNNRTG	1 cut(s)	174
SsiI	CCGC	2 cut(s)	49, 137
TaqI	TCGA	5 cut(s)	38, 61, 147, 174, 192
TfiI	GAWTC	1 cut(s)	11
TseFI	GTSAC	2 cut(s)	167, 247
Tsp45I	GTSAC	2 cut(s)	167, 247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.