Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008255

Physical Location & Seq

Genomic Coordinates Forward (+)

9960184 .. 9962854

Gene Structure 2671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G126600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTGTATCAAGATGGAGTCTGATAATTCGTGGAGCAGTCTCTTCTCGAGCTCTTCGTCGAGGCGGTACCAATCTCGATCCGGTCACTTTTCCCAAACTACCCCAGATCTGTTTGCGCACGACGAAACTGATGGAGACGATGAGTTAAAGGCCGAGTTTTTGTGCCCTTTTTGCGCCGAGGATTTTGATGTTGTTGGGCTTTGTTGCCACATCGATGAGGAACATCCGGTGGAGGCTAAGAACGGGGTCTGTCCAGTTTGTGCCAAAAGGGTGGGAGCAAACCTTGTGAGCCATATTACCACGCAACATGGGAGTTTGTTAAAGGTTCAGCGCAAGAGGAAATTTCGCAGGGGATCTAATTCAACATTTTCTATATTAAGGAAAGAGCTGCGAGAAGGAAGTTTACAAGCCCTTCTCGGAGGTTCTTCTTTCCTTGTTTCTTCAAACACGGAAGCTGATCCTTTGCTGTCTTCCTTTATTTATAACCCACCCACAGTTGATGAGGATGTGAGCGCACAACCCGATCCTTTAGTCGAAGCTTCTTTTGTAAAGGAAAGCACAAAGGAAGAGTTCTCGGAAAGAATCGTGCAACAACCACCGCTATCGCATAAGGACCAAGAAGAGAAGGCGCGGAAGTGTGAGTTTGTTCAAGGATTGCTGATGTCCACCATCCTTGATGACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

229

Amino Acids

25.42

Weight (kDa)

5.11

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06760 AT3G06760 AT5G49230 AT5G49230
fragaria_vesca	FvH4_4g19190
malus_domestica	MD13G1160200.v1.1 MD16G1159500.v1.1
prunus_persica	Prupe.1G126600_v2.0.a1 Prupe.1G126600_v2.0.a1 Prupe.1G126700_v2.0.a1
pyrus_communis	pycom13g13630
rosa_chinensis	RchiOBHm_Chr4g0424161 RchiOBHm_Chr4g0424171
rosa_laevigata	RLG00000007500
rosa_multiflora	Rmu_sc0002260.1_g000044 Rmu_sc0038176.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366140
rosa_rugosa	Rorug04G0193500
rosa_samantha	Rh4AG251400 Rh4BG256500 Rh4CG267400 Rh4DG251100
rosa_wichuraiana	Rw4G021680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	483
Acc16I	TGCGCA	1 cut(s)	117
Acc65I	GGTACC	1 cut(s)	66
AccB1I	GGYRCC	1 cut(s)	66
AccII	CGCG	1 cut(s)	631
AciI	CCGC	3 cut(s)	64, 599, 631
AclWI	GGATC	4 cut(s)	72, 361, 452, 518
AcsI	RAATTY	1 cut(s)	341
AfaI	GTAC	1 cut(s)	68
AgsI	TTSAA	3 cut(s)	363, 444, 650
AluBI	AGCT	4 cut(s)	51, 388, 455, 539
AluI	AGCT	4 cut(s)	51, 388, 455, 539
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	2 cut(s)	44, 129
AlwI	GGATC	4 cut(s)	72, 361, 452, 518
Ama87I	CYCGRG	1 cut(s)	46
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	388
ApoI	RAATTY	1 cut(s)	341
Asp718I	GGTACC	1 cut(s)	66
AspLEI	GCGC	5 cut(s)	118, 176, 333, 515, 631
AspS9I	GGNCC	1 cut(s)	613
AvaI	CYCGRG	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	613
BaeGI	GKGCMC	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	53
BarI	GAAGNNNNNNTAC	2 cut(s)	387, 419
BbsI	GAAGAC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	375
BccI	CCATC	3 cut(s)	7, 125, 677
BcoDI	GTCTC	2 cut(s)	44, 129
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	1 cut(s)	389
BlsI	GCNGC	1 cut(s)	390
Bme18I	GGWCC	1 cut(s)	613
BmeT110I	CYCGRG	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	613
BmiI	GGNNCC	1 cut(s)	68
BpiI	GAAGAC	1 cut(s)	462
Bsa29I	ATCGAT	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	177
BsaWI	WCCGGW	2 cut(s)	80, 226
Bse1I	ACTGG	1 cut(s)	254
BseCI	ATCGAT	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	3 cut(s)	223, 511, 669
BseNI	ACTGG	1 cut(s)	254
BseSI	GKGCMC	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	375
Bsh1236I	CGCG	1 cut(s)	631
BshFI	GGCC	1 cut(s)	152
BshNI	GGYRCC	1 cut(s)	66
BshVI	ATCGAT	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	53
BsiHKCI	CYCGRG	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	81, 227
BsmAI	GTCTC	2 cut(s)	44, 129
BsmBI	CGTCTC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	46
Bsp1286I	GDGCHC	2 cut(s)	53, 167
Bsp143I	GATC	5 cut(s)	77, 106, 353, 457, 523
BspACI	CCGC	3 cut(s)	64, 599, 631
BspANI	GGCC	1 cut(s)	152
BspDI	ATCGAT	1 cut(s)	213
BspFNI	CGCG	1 cut(s)	631
BspLI	GGNNCC	1 cut(s)	68
BspPI	GGATC	4 cut(s)	72, 361, 452, 518
BspQI	GCTCTTC	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	5 cut(s)	77, 106, 353, 457, 523
Bst4CI	ACNGT	1 cut(s)	496
Bst6I	CTCTTC	4 cut(s)	47, 58, 561, 615
BstDEI	CTNAG	1 cut(s)	237
BstF5I	GGATG	3 cut(s)	223, 511, 669
BstFNI	CGCG	1 cut(s)	631
BstHHI	GCGC	5 cut(s)	118, 176, 333, 515, 631
BstKTI	GATC	5 cut(s)	80, 109, 356, 460, 526
BstMAI	GTCTC	2 cut(s)	44, 129
BstMBI	GATC	5 cut(s)	77, 106, 353, 457, 523
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstSLI	GKGCMC	1 cut(s)	167
BstUI	CGCG	1 cut(s)	631
BstV1I	GCAGC	1 cut(s)	375
BstV2I	GAAGAC	1 cut(s)	462
BstX2I	RGATCY	2 cut(s)	106, 353
BstXI	CCANNNNNNTGG	1 cut(s)	271
BstYI	RGATCY	2 cut(s)	106, 353
Bsu15I	ATCGAT	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	152
BsuTUI	ATCGAT	1 cut(s)	213
BtsCI	GGATG	3 cut(s)	223, 511, 669
CfoI	GCGC	5 cut(s)	118, 176, 333, 515, 631
Cfr13I	GGNCC	1 cut(s)	613
ClaI	ATCGAT	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	67
CspCI	CAANNNNNGTGG	1 cut(s)	655
CviAII	CATG	1 cut(s)	308
CviJI	RGCY	9 cut(s)	51, 152, 199, 236, 291, 388, 410, 455, 539
CviKI_1	RGCY	9 cut(s)	51, 152, 199, 236, 291, 388, 410, 455, 539
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	5 cut(s)	79, 108, 355, 459, 525
DpnII	GATC	5 cut(s)	77, 106, 353, 457, 523
Eam1104I	CTCTTC	4 cut(s)	47, 58, 561, 615
EarI	CTCTTC	4 cut(s)	47, 58, 561, 615
Ecl136II	GAGCTC	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	613
Eco53kI	GAGCTC	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	46
EcoICRI	GAGCTC	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	53
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	1 cut(s)	311
FaiI	YATR	6 cut(s)	294, 309, 374, 483, 609, 685
FatI	CATG	1 cut(s)	307
Fnu4HI	GCNGC	1 cut(s)	389
FokI	GGATG	3 cut(s)	210, 518, 656
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	389
FspI	TGCGCA	1 cut(s)	117
GlaI	GCGC	5 cut(s)	117, 175, 332, 514, 630
GluI	GCNGC	1 cut(s)	389
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	2 cut(s)	81, 227
HhaI	GCGC	5 cut(s)	118, 176, 333, 515, 631
Hin1II	CATG	1 cut(s)	311
Hin6I	GCGC	5 cut(s)	116, 174, 331, 513, 629
HinP1I	GCGC	5 cut(s)	116, 174, 331, 513, 629
HindIII	AAGCTT	1 cut(s)	537
HinfI	GANTC	2 cut(s)	17, 582
HpaII	CCGG	2 cut(s)	81, 227
Hpy166II	GTNNAC	2 cut(s)	404, 666
Hpy188I	TCNGA	3 cut(s)	22, 419, 577
Hpy188III	TCNNGA	3 cut(s)	10, 46, 75
Hpy8I	GTNNAC	2 cut(s)	404, 666
Hpy99I	CGWCG	2 cut(s)	61, 125
HpyAV	CCTTC	3 cut(s)	389, 422, 619
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4V	TGCA	1 cut(s)	589
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
HpyF3I	CTNAG	1 cut(s)	237
Hsp92II	CATG	1 cut(s)	311
HspAI	GCGC	5 cut(s)	116, 174, 331, 513, 629
KpnI	GGTACC	1 cut(s)	70
Kzo9I	GATC	5 cut(s)	77, 106, 353, 457, 523
LguI	GCTCTTC	1 cut(s)	58
LmnI	GCTCC	2 cut(s)	33, 275
LpnPI	CCDG	5 cut(s)	94, 117, 240, 267, 334
Lsp1109I	GCAGC	1 cut(s)	375
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	5 cut(s)	79, 108, 355, 459, 525
MboI	GATC	5 cut(s)	77, 106, 353, 457, 523
MboII	GAAGA	7 cut(s)	34, 45, 417, 432, 462, 578, 632
MflI	RGATCY	2 cut(s)	106, 353
MhlI	GDGCHC	2 cut(s)	53, 167
MluCI	AATT	3 cut(s)	25, 341, 358
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	7 cut(s)	54, 172, 211, 226, 330, 413, 496
MseI	TTAA	3 cut(s)	146, 320, 377
MslI	CAYNNNNRTG	1 cut(s)	213
MspI	CCGG	2 cut(s)	81, 227
MvnI	CGCG	1 cut(s)	631
MwoI	GCNNNNNNNGC	1 cut(s)	171
NdeII	GATC	5 cut(s)	77, 106, 353, 457, 523
NlaIII	CATG	1 cut(s)	311
NlaIV	GGNNCC	1 cut(s)	68
NmeAIII	GCCGAG	2 cut(s)	178, 202
NmuCI	GTSAC	1 cut(s)	83
NsbI	TGCGCA	1 cut(s)	117
PaeR7I	CTCGAG	1 cut(s)	46
PciSI	GCTCTTC	1 cut(s)	58
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	582
PkrI	GCNGC	1 cut(s)	390
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PsiI	TTATAA	1 cut(s)	483
Psp124BI	GAGCTC	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	1 cut(s)	613
PsuI	RGATCY	2 cut(s)	106, 353
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	213
SacI	GAGCTC	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	58
SaqAI	TTAA	3 cut(s)	146, 320, 377
SatI	GCNGC	1 cut(s)	389
Sau3AI	GATC	5 cut(s)	77, 106, 353, 457, 523
Sau96I	GGNCC	1 cut(s)	613
SchI	GAGTC	1 cut(s)	26
SduI	GDGCHC	2 cut(s)	53, 167
SetI	ASST	7 cut(s)	53, 285, 327, 390, 424, 457, 541
Sfr274I	CTCGAG	1 cut(s)	46
SinI	GGWCC	1 cut(s)	613
SlaI	CTCGAG	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
Sse9I	AATT	3 cut(s)	25, 341, 358
SsiI	CCGC	3 cut(s)	64, 599, 631
SstI	GAGCTC	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	496
TaqI	TCGA	5 cut(s)	47, 59, 76, 213, 534
TasI	AATT	3 cut(s)	25, 341, 358
TfiI	GAWTC	1 cut(s)	582
Tru1I	TTAA	3 cut(s)	146, 320, 377
Tru9I	TTAA	3 cut(s)	146, 320, 377
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	1 cut(s)	388
Tsp45I	GTSAC	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	613
XapI	RAATTY	1 cut(s)	341
XhoI	CTCGAG	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.