Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0008255

Physical Location & Seq

Genomic Coordinates Reverse (-)

46366449 .. 46368481

Gene Structure 2033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G021680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGACTCTGATTCATGGAGCAATCTGTTCTCGTCCTCGAACGCGAGGCGGTACCAGTCTCGATCCGATCTGTTCGGACACGAGGAAATAGAGGGAGACGATGAGATAAAGGCTGAGTTTTTGTGCCCCTTTTGCGCGGAGGATTTCGATGTCGTTGGGCTTTGTTGTCACATCGATGAGGAACATCCCGTCGAGGCTAAGAATGGGGTCTGTCCAGTTTGTGCAAAGAGGGTGGGATCAAATCTTGTCACCCATATTACCACACAACATGGGATGATGTATTCCTTGACTATACATTACGTTCAGCGCAAAAGGAAATTTCGCAGGGGATCTAATTCGACATTTTCAATATTAAGGAAAGAGCTGCGAGAAGGAAGTCTACAAGCCCTTCTGGGAGGTTCTTCATTCCCATTTTCTTCAAATACGGAACCTGATCCTTTGTTGTCTTCTTTTATATACAATGCACCTGATGAACATGTGAGGGAGCAACCCCATCCTTTAGTCGAAGCACCTTTCATGAAGGAAAGCACAAAAGAAGAGTCCTCAGAAAGAATTGCTCAACCACCACCTCTATCAACCAAAGACCAAGAGGAGAAGGCTCGGAAGTGTGAGTTTGTTCAAGGATTGCTGATGTCCACCATTCTTGATGATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

218

Amino Acids

24.65

Weight (kDa)

5.2

Isoelectric Point (pI)

71.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	39 - 91	5.2e-24	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	115 - 214	2e-33	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06760 AT3G06760 AT5G49230 AT5G49230
fragaria_vesca	FvH4_4g19190
malus_domestica	MD13G1160200.v1.1 MD16G1159500.v1.1
prunus_persica	Prupe.1G126600_v2.0.a1 Prupe.1G126600_v2.0.a1 Prupe.1G126700_v2.0.a1
pyrus_communis	pycom13g13630
rosa_chinensis	RchiOBHm_Chr4g0424161 RchiOBHm_Chr4g0424171
rosa_laevigata	RLG00000007500
rosa_multiflora	Rmu_sc0002260.1_g000044 Rmu_sc0038176.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366140
rosa_rugosa	Rorug04G0193500
rosa_samantha	Rh4AG251400 Rh4BG256500 Rh4CG267400 Rh4DG251100
rosa_wichuraiana	Rw4G021680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	51
AccB1I	GGYRCC	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	379
AccII	CGCG	2 cut(s)	44, 137
AciI	CCGC	2 cut(s)	49, 137
AclWI	GGATC	4 cut(s)	57, 244, 337, 428
AcsI	RAATTY	1 cut(s)	317
AfaI	GTAC	1 cut(s)	53
AflIII	ACRYGT	1 cut(s)	475
AgsI	TTSAA	3 cut(s)	348, 420, 620
AluBI	AGCT	1 cut(s)	364
AluI	AGCT	1 cut(s)	364
Alw26I	GTCTC	2 cut(s)	63, 90
AlwI	GGATC	4 cut(s)	57, 244, 337, 428
ApeKI	GCWGC	1 cut(s)	364
ApoI	RAATTY	1 cut(s)	317
ArsI	GACNNNNNNTTYG	2 cut(s)	524, 556
Asp718I	GGTACC	1 cut(s)	51
AspLEI	GCGC	2 cut(s)	137, 309
AsuHPI	GGTGA	1 cut(s)	241
BaeGI	GKGCMC	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	51
BarI	GAAGNNNNNNTAC	2 cut(s)	363, 395
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	438
BbvI	GCAGC	1 cut(s)	351
BccI	CCATC	1 cut(s)	501
BcoDI	GTCTC	2 cut(s)	63, 90
BisI	GCNGC	1 cut(s)	365
BlsI	GCNGC	1 cut(s)	366
BmiI	GGNNCC	2 cut(s)	53, 429
BpiI	GAAGAC	1 cut(s)	438
Bsa29I	ATCGAT	1 cut(s)	174
Bse1I	ACTGG	2 cut(s)	55, 215
BseCI	ATCGAT	1 cut(s)	174
BseGI	GGATG	3 cut(s)	184, 279, 493
BseMII	CTCAG	2 cut(s)	105, 558
BseNI	ACTGG	2 cut(s)	55, 215
BseRI	GAGGAG	1 cut(s)	605
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	351
Bsh1236I	CGCG	2 cut(s)	44, 137
BshNI	GGYRCC	1 cut(s)	51
BshVI	ATCGAT	1 cut(s)	174
BsmAI	GTCTC	2 cut(s)	63, 90
BsmBI	CGTCTC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	5 cut(s)	62, 67, 236, 329, 433
BspACI	CCGC	2 cut(s)	49, 137
BspCNI	CTCAG	2 cut(s)	106, 557
BspDI	ATCGAT	1 cut(s)	174
BspFNI	CGCG	2 cut(s)	44, 137
BspHI	TCATGA	1 cut(s)	516
BspLI	GGNNCC	2 cut(s)	53, 429
BspPI	GGATC	4 cut(s)	57, 244, 337, 428
BspT107I	GGYRCC	1 cut(s)	51
BsrI	ACTGG	2 cut(s)	55, 215
BssMI	GATC	5 cut(s)	62, 67, 236, 329, 433
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	531
BstDEI	CTNAG	3 cut(s)	114, 198, 544
BstF5I	GGATG	3 cut(s)	184, 279, 493
BstFNI	CGCG	2 cut(s)	44, 137
BstHHI	GCGC	2 cut(s)	137, 309
BstKTI	GATC	5 cut(s)	65, 70, 239, 332, 436
BstMAI	GTCTC	2 cut(s)	63, 90
BstMBI	GATC	5 cut(s)	62, 67, 236, 329, 433
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	479
BstSLI	GKGCMC	1 cut(s)	128
BstUI	CGCG	2 cut(s)	44, 137
BstV1I	GCAGC	1 cut(s)	351
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
Bsu15I	ATCGAT	1 cut(s)	174
BsuTUI	ATCGAT	1 cut(s)	174
BtsCI	GGATG	3 cut(s)	184, 279, 493
CciI	TCATGA	1 cut(s)	516
CfoI	GCGC	2 cut(s)	137, 309
ClaI	ATCGAT	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	52
CspCI	CAANNNNNGTGG	3 cut(s)	213, 248, 625
CviAII	CATG	4 cut(s)	15, 269, 476, 517
CviJI	RGCY	6 cut(s)	113, 160, 197, 364, 386, 599
CviKI_1	RGCY	6 cut(s)	113, 160, 197, 364, 386, 599
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	3 cut(s)	114, 198, 544
DpnI	GATC	5 cut(s)	64, 69, 238, 331, 435
DpnII	GATC	5 cut(s)	62, 67, 236, 329, 433
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	4 cut(s)	18, 272, 479, 520
FaiI	YATR	9 cut(s)	16, 255, 270, 293, 455, 457, 477, 518, 655
FatI	CATG	4 cut(s)	14, 268, 475, 516
FblI	GTMKAC	1 cut(s)	379
Fnu4HI	GCNGC	1 cut(s)	365
FokI	GGATG	3 cut(s)	171, 286, 480
Fsp4HI	GCNGC	1 cut(s)	365
GlaI	GCGC	2 cut(s)	136, 308
GluI	GCNGC	1 cut(s)	365
HhaI	GCGC	2 cut(s)	137, 309
Hin1II	CATG	4 cut(s)	18, 272, 479, 520
Hin6I	GCGC	2 cut(s)	135, 307
HinP1I	GCGC	2 cut(s)	135, 307
HinfI	GANTC	3 cut(s)	5, 11, 539
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	2 cut(s)	380, 636
Hpy188I	TCNGA	5 cut(s)	10, 67, 77, 547, 603
Hpy188III	TCNNGA	3 cut(s)	60, 517, 644
Hpy8I	GTNNAC	2 cut(s)	380, 636
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	4 cut(s)	365, 398, 514, 589
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	2 cut(s)	224, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	3 cut(s)	114, 198, 544
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	4 cut(s)	18, 272, 479, 520
HspAI	GCGC	2 cut(s)	135, 307
KpnI	GGTACC	1 cut(s)	55
Kzo9I	GATC	5 cut(s)	62, 67, 236, 329, 433
LmnI	GCTCC	2 cut(s)	18, 484
LpnPI	CCDG	6 cut(s)	68, 228, 310, 377, 444, 480
Lsp1109I	GCAGC	1 cut(s)	351
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	2 cut(s)	167, 247
MalI	GATC	5 cut(s)	64, 69, 238, 331, 435
MboI	GATC	5 cut(s)	62, 67, 236, 329, 433
MboII	GAAGA	4 cut(s)	393, 408, 438, 548
MflI	RGATCY	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	128
MluCI	AATT	3 cut(s)	317, 334, 552
MlyI	GAGTC	1 cut(s)	548
MseI	TTAA	1 cut(s)	353
MslI	CAYNNNNRTG	1 cut(s)	174
MvnI	CGCG	2 cut(s)	44, 137
MwoI	GCNNNNNNNGC	1 cut(s)	132
NdeII	GATC	5 cut(s)	62, 67, 236, 329, 433
NlaIII	CATG	4 cut(s)	18, 272, 479, 520
NlaIV	GGNNCC	2 cut(s)	53, 429
NmuCI	GTSAC	2 cut(s)	167, 247
NspI	RCATGY	1 cut(s)	479
PagI	TCATGA	1 cut(s)	516
PciI	ACATGT	1 cut(s)	475
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	366
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
PscI	ACATGT	1 cut(s)	475
PspN4I	GGNNCC	2 cut(s)	53, 429
PsuI	RGATCY	1 cut(s)	329
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	1 cut(s)	365
Sau3AI	GATC	5 cut(s)	62, 67, 236, 329, 433
SchI	GAGTC	1 cut(s)	548
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	7 cut(s)	303, 366, 400, 433, 469, 514, 571
SmiMI	CAYNNNNRTG	1 cut(s)	174
Sse9I	AATT	3 cut(s)	317, 334, 552
SsiI	CCGC	2 cut(s)	49, 137
SspI	AATATT	1 cut(s)	351
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	7 cut(s)	38, 61, 147, 174, 192, 338, 504
TasI	AATT	3 cut(s)	317, 334, 552
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TseFI	GTSAC	2 cut(s)	167, 247
TseI	GCWGC	1 cut(s)	364
Tsp45I	GTSAC	2 cut(s)	167, 247
TspDTI	ATGAA	4 cut(s)	393, 486, 505, 533
TspGWI	ACGGA	1 cut(s)	440
XapI	RAATTY	1 cut(s)	317
XceI	RCATGY	1 cut(s)	479
XmiI	GTMKAC	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.