Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008255

Physical Location & Seq

Genomic Coordinates Reverse (-)

22899486 .. 22902190

Gene Structure 2705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g19190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGACTCTGATTCCTGGAGCAACCTGTTCTCGTCTTCGAACGCGAGGAGGTACCAGTCCCGATCCGATCTGTTCGGGCACGAGGAGATAGAAGGAGACGATGAGATAAAGGCTGAGTTTTTGTGCCCTTTTTGCGCGGAGGACTTCGATGTCGTTGGGCTTTGTTGTCACATCGATGAGGAGCATCCCGTCGAGGCTAAGAATGGGGTCTGTCCAGTTTGTACTAAGAGGGTTGGATCAAATCTTGTCACACATATTACCACGCAACATGGGAGTCTATTAAAGGTTCAGCGCAAAAGGAAATTGCGCAGGGGAACTAATTCGACATTTTCAATATTAAGGAAAGAGCTGCGAGAAGGAAGTCTACAAGCCCTCCTGGGAGGGTCTTCATTCCCATTTTCCTCAAACACCGAACCTGATCCTTTGTTGTCTTCTTTTATATACAATGCACCTGATGAACATGTGAGCGAACAACCCCTTCCTTTAGTTGAAGCACCATTCATGAAGGAAAGCACAAAAGAAGAGTCCTCCGAAAGAATTGCTCAACAACCACCTCTATCAACTAAAGACCAAGAGGAGAAGGCTCGGAAGTGTGAGTTTGTCCAAGGATTGCTGATGTCCACCATTCTTGATGACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

214

Amino Acids

23.89

Weight (kDa)

5.05

Isoelectric Point (pI)

70.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	39 - 91	1.2e-23	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	110 - 209	8.7e-34	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06760 AT3G06760 AT5G49230 AT5G49230
fragaria_vesca	FvH4_4g19190
malus_domestica	MD13G1160200.v1.1 MD16G1159500.v1.1
prunus_persica	Prupe.1G126600_v2.0.a1 Prupe.1G126600_v2.0.a1 Prupe.1G126700_v2.0.a1
pyrus_communis	pycom13g13630
rosa_chinensis	RchiOBHm_Chr4g0424161 RchiOBHm_Chr4g0424171
rosa_laevigata	RLG00000007500
rosa_multiflora	Rmu_sc0002260.1_g000044 Rmu_sc0038176.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366140
rosa_rugosa	Rorug04G0193500
rosa_samantha	Rh4AG251400 Rh4BG256500 Rh4CG267400 Rh4DG251100
rosa_wichuraiana	Rw4G021680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	149
Acc16I	TGCGCA	1 cut(s)	308
Acc65I	GGTACC	1 cut(s)	51
AccB1I	GGYRCC	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	364
AccII	CGCG	2 cut(s)	44, 137
AciI	CCGC	1 cut(s)	137
AclWI	GGATC	3 cut(s)	57, 244, 413
AfaI	GTAC	2 cut(s)	53, 223
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	2 cut(s)	333, 491
AjnI	CCWGG	2 cut(s)	14, 375
AluBI	AGCT	1 cut(s)	349
AluI	AGCT	1 cut(s)	349
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	3 cut(s)	57, 244, 413
ApeKI	GCWGC	1 cut(s)	349
ArsI	GACNNNNNNTTYG	2 cut(s)	509, 541
Asp700I	GAANNNNTTC	1 cut(s)	319
Asp718I	GGTACC	1 cut(s)	51
AspLEI	GCGC	3 cut(s)	137, 294, 309
AsuII	TTCGAA	1 cut(s)	38
BaeGI	GKGCMC	2 cut(s)	81, 128
BanI	GGYRCC	1 cut(s)	51
BarI	GAAGNNNNNNTAC	2 cut(s)	348, 380
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	3 cut(s)	27, 378, 423
BbvI	GCAGC	1 cut(s)	336
BcgI	CGANNNNNNTGC	2 cut(s)	521, 555
BciT130I	CCWGG	2 cut(s)	16, 377
BcoDI	GTCTC	1 cut(s)	90
BisI	GCNGC	1 cut(s)	350
BlsI	GCNGC	1 cut(s)	351
Bme1390I	CCNGG	2 cut(s)	16, 377
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	2 cut(s)	16, 377
BmsI	GCATC	1 cut(s)	193
BpiI	GAAGAC	3 cut(s)	27, 378, 423
BpmI	CTGGAG	1 cut(s)	37
Bpu14I	TTCGAA	1 cut(s)	38
Bsa29I	ATCGAT	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	376, 604
BsaXI	ACNNNNNCTCC	2 cut(s)	357, 387
Bse1I	ACTGG	2 cut(s)	55, 215
BseBI	CCWGG	2 cut(s)	16, 377
BseCI	ATCGAT	1 cut(s)	174
BseDI	CCNNGG	2 cut(s)	376, 604
BseGI	GGATG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	2 cut(s)	55, 215
BseRI	GAGGAG	4 cut(s)	61, 98, 194, 590
BseSI	GKGCMC	2 cut(s)	81, 128
BseXI	GCAGC	1 cut(s)	336
Bsh1236I	CGCG	2 cut(s)	44, 137
BshNI	GGYRCC	1 cut(s)	51
BshVI	ATCGAT	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	90
BsmBI	CGTCTC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	43
Bsp119I	TTCGAA	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	81, 128
Bsp143I	GATC	4 cut(s)	62, 67, 236, 418
BspACI	CCGC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	106
BspDI	ATCGAT	1 cut(s)	174
BspFNI	CGCG	2 cut(s)	44, 137
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	1 cut(s)	53
BspPI	GGATC	3 cut(s)	57, 244, 413
BspT104I	TTCGAA	1 cut(s)	38
BspT107I	GGYRCC	1 cut(s)	51
BsrI	ACTGG	2 cut(s)	55, 215
BssECI	CCNNGG	2 cut(s)	376, 604
BssMI	GATC	4 cut(s)	62, 67, 236, 418
BssSI	CACGAG	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	604
Bst2BI	CACGAG	1 cut(s)	80
Bst2UI	CCWGG	2 cut(s)	16, 377
Bst6I	CTCTTC	1 cut(s)	516
BstBI	TTCGAA	1 cut(s)	38
BstDEI	CTNAG	3 cut(s)	114, 198, 225
BstF5I	GGATG	1 cut(s)	184
BstFNI	CGCG	2 cut(s)	44, 137
BstHHI	GCGC	3 cut(s)	137, 294, 309
BstKTI	GATC	4 cut(s)	65, 70, 239, 421
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	4 cut(s)	62, 67, 236, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNI	CCWGG	2 cut(s)	16, 377
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	2 cut(s)	14, 375
BstSLI	GKGCMC	2 cut(s)	81, 128
BstUI	CGCG	2 cut(s)	44, 137
BstV1I	GCAGC	1 cut(s)	336
BstV2I	GAAGAC	3 cut(s)	27, 378, 423
Bsu15I	ATCGAT	1 cut(s)	174
BsuTUI	ATCGAT	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	184
CciI	TCATGA	1 cut(s)	501
CfoI	GCGC	3 cut(s)	137, 294, 309
ClaI	ATCGAT	1 cut(s)	174
Csp6I	GTAC	2 cut(s)	52, 222
CspCI	CAANNNNNGTGG	1 cut(s)	610
CviAII	CATG	3 cut(s)	269, 461, 502
CviJI	RGCY	6 cut(s)	113, 160, 197, 349, 371, 584
CviKI_1	RGCY	6 cut(s)	113, 160, 197, 349, 371, 584
CviQI	GTAC	2 cut(s)	52, 222
DdeI	CTNAG	3 cut(s)	114, 198, 225
DpnI	GATC	4 cut(s)	64, 69, 238, 420
DpnII	GATC	4 cut(s)	62, 67, 236, 418
DrdI	GACNNNNNNGTC	1 cut(s)	149
DseDI	GACNNNNNNGTC	1 cut(s)	149
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
Eco130I	CCWWGG	1 cut(s)	604
EcoRII	CCWGG	2 cut(s)	14, 375
EcoT14I	CCWWGG	1 cut(s)	604
ErhI	CCWWGG	1 cut(s)	604
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	3 cut(s)	272, 464, 505
FaiI	YATR	7 cut(s)	255, 270, 440, 442, 462, 503, 640
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	3 cut(s)	268, 460, 501
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	350
FokI	GGATG	1 cut(s)	171
Fsp4HI	GCNGC	1 cut(s)	350
FspI	TGCGCA	1 cut(s)	308
GlaI	GCGC	3 cut(s)	136, 293, 308
GluI	GCNGC	1 cut(s)	350
GsuI	CTGGAG	1 cut(s)	37
HhaI	GCGC	3 cut(s)	137, 294, 309
Hin1II	CATG	3 cut(s)	272, 464, 505
Hin6I	GCGC	3 cut(s)	135, 292, 307
HinP1I	GCGC	3 cut(s)	135, 292, 307
HinfI	GANTC	4 cut(s)	5, 11, 274, 524
Hpy166II	GTNNAC	2 cut(s)	365, 621
Hpy188I	TCNGA	4 cut(s)	10, 67, 532, 588
Hpy188III	TCNNGA	3 cut(s)	60, 502, 629
Hpy8I	GTNNAC	2 cut(s)	365, 621
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	5 cut(s)	86, 350, 488, 499, 574
HpyCH4V	TGCA	1 cut(s)	449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	3 cut(s)	114, 198, 225
Hsp92II	CATG	3 cut(s)	272, 464, 505
HspAI	GCGC	3 cut(s)	135, 292, 307
KpnI	GGTACC	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	62, 67, 236, 418
LmnI	GCTCC	2 cut(s)	18, 181
LpnPI	CCDG	9 cut(s)	28, 38, 68, 228, 295, 362, 389, 429, 465
Lsp1109I	GCAGC	1 cut(s)	336
LweI	GCATC	1 cut(s)	193
MaeIII	GTNAC	2 cut(s)	167, 247
MalI	GATC	4 cut(s)	64, 69, 238, 420
MboI	GATC	4 cut(s)	62, 67, 236, 418
MboII	GAAGA	4 cut(s)	27, 378, 423, 533
MhlI	GDGCHC	2 cut(s)	81, 128
MluCI	AATT	3 cut(s)	302, 319, 537
MlyI	GAGTC	2 cut(s)	283, 533
MmeI	TCCRAC	1 cut(s)	214
MroXI	GAANNNNTTC	1 cut(s)	319
MseI	TTAA	2 cut(s)	281, 338
MslI	CAYNNNNRTG	1 cut(s)	174
MspR9I	CCNGG	2 cut(s)	16, 377
MvaI	CCWGG	2 cut(s)	16, 377
MvnI	CGCG	2 cut(s)	44, 137
MwoI	GCNNNNNNNGC	1 cut(s)	132
NdeII	GATC	4 cut(s)	62, 67, 236, 418
NlaIII	CATG	3 cut(s)	272, 464, 505
NlaIV	GGNNCC	1 cut(s)	53
NmuCI	GTSAC	2 cut(s)	167, 247
NsbI	TGCGCA	1 cut(s)	308
NspI	RCATGY	1 cut(s)	464
NspV	TTCGAA	1 cut(s)	38
PagI	TCATGA	1 cut(s)	501
PciI	ACATGT	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	351
PleI	GAGTC	2 cut(s)	282, 532
PpsI	GAGTC	2 cut(s)	282, 532
PscI	ACATGT	1 cut(s)	460
Psp6I	CCWGG	2 cut(s)	14, 375
PspGI	CCWGG	2 cut(s)	14, 375
PspN4I	GGNNCC	1 cut(s)	53
RsaI	GTAC	2 cut(s)	53, 223
RsaNI	GTAC	2 cut(s)	52, 222
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	281, 338
SatI	GCNGC	1 cut(s)	350
Sau3AI	GATC	4 cut(s)	62, 67, 236, 418
SchI	GAGTC	2 cut(s)	283, 533
ScrFI	CCNGG	2 cut(s)	16, 377
SduI	GDGCHC	2 cut(s)	81, 128
SetI	ASST	7 cut(s)	27, 53, 288, 351, 418, 454, 556
SfaNI	GCATC	1 cut(s)	193
SfuI	TTCGAA	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	174
Sse9I	AATT	3 cut(s)	302, 319, 537
SsiI	CCGC	1 cut(s)	137
SspI	AATATT	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	14, 375
StyI	CCWWGG	1 cut(s)	604
TaqI	TCGA	5 cut(s)	38, 147, 174, 192, 323
TasI	AATT	3 cut(s)	302, 319, 537
TatI	WGTACW	1 cut(s)	221
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	2 cut(s)	281, 338
Tru9I	TTAA	2 cut(s)	281, 338
TseFI	GTSAC	2 cut(s)	167, 247
TseI	GCWGC	1 cut(s)	349
Tsp45I	GTSAC	2 cut(s)	167, 247
TspDTI	ATGAA	4 cut(s)	378, 471, 490, 518
XceI	RCATGY	1 cut(s)	464
XmiI	GTMKAC	1 cut(s)	364
XmnI	GAANNNNTTC	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.