Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0008255

Physical Location & Seq

Genomic Coordinates Reverse (-)

46594519 .. 46596990

Gene Structure 2472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG251100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGACTCTGATTCATGGAGCAATCTGTTCTCGTCCTCGAACGCGAGGCGGTACCAGTCTCGATCCGATCTGTTCGGACACGAGGAAATAGAGGGAGACGATGAGATAAAGGCTGAGTTTTTGTGCCCCTTTTGCGCGGAGGATTTCGATGTCGTTGGGCTTTGTTGTCACATCGATGAGGAACATCCCGTCGAGGCTAAGAATGGGGTCTGTCCAGTTTGTGCAAAGAGGGTGGGATCAAATCTTGTCACCCATATTACCACACAACATGGGAGTTTGTTAAAGGTTCAGCGCAAAAGGAAATTTCGCAGGGGATCTAATTCGACATTTTCAATATTAAGGAAAGAGCTGCGAGAAGGAAGTCTACAAGCCCTTCTGGGAGGTTCTTCATTCCCATTTTCTTCAAATACGGAACCTGATCCTTTGTTGTCTTCTTTTATATACAATGCACCTGATGAACATGTGAGGGAGCAACCCCATCCTTTAGTCGAAGCACCTTTCATGAAGGAAAGCACAAAAGAAGAGTCCTCAGAAAGGTATGAGCATTACCACGACTTCTTCTTCTTTTATTTTTTTGGTTCCTTAACTCTCCAAGTGAAAATGACGGTCTCCATATCTCAAGGCATTGGTTTTAGGTCGGGATCAGATCAGCTAGTGATAATGATTCTACTAGGACTTTTGCATATCTTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

231

Amino Acids

26.21

Weight (kDa)

5.56

Isoelectric Point (pI)

65.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	39 - 91	5.8e-24	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	110 - 180	3.9e-17	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06760 AT3G06760 AT5G49230 AT5G49230
fragaria_vesca	FvH4_4g19190
malus_domestica	MD13G1160200.v1.1 MD16G1159500.v1.1
prunus_persica	Prupe.1G126600_v2.0.a1 Prupe.1G126600_v2.0.a1 Prupe.1G126700_v2.0.a1
pyrus_communis	pycom13g13630
rosa_chinensis	RchiOBHm_Chr4g0424161 RchiOBHm_Chr4g0424171
rosa_laevigata	RLG00000007500
rosa_multiflora	Rmu_sc0002260.1_g000044 Rmu_sc0038176.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366140
rosa_rugosa	Rorug04G0193500
rosa_samantha	Rh4AG251400 Rh4BG256500 Rh4CG267400 Rh4DG251100
rosa_wichuraiana	Rw4G021680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	51
AccB1I	GGYRCC	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	364
AccII	CGCG	2 cut(s)	44, 137
AciI	CCGC	2 cut(s)	49, 137
AclWI	GGATC	5 cut(s)	57, 244, 322, 413, 649
AcsI	RAATTY	1 cut(s)	302
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	534
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	2 cut(s)	333, 405
AluBI	AGCT	2 cut(s)	349, 652
AluI	AGCT	2 cut(s)	349, 652
Alw26I	GTCTC	3 cut(s)	63, 90, 613
AlwI	GGATC	5 cut(s)	57, 244, 322, 413, 649
ApeKI	GCWGC	1 cut(s)	349
ApoI	RAATTY	1 cut(s)	302
ArsI	GACNNNNNNTTYG	2 cut(s)	509, 541
Asp718I	GGTACC	1 cut(s)	51
AspLEI	GCGC	2 cut(s)	137, 294
AsuHPI	GGTGA	1 cut(s)	241
BaeGI	GKGCMC	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	51
BarI	GAAGNNNNNNTAC	2 cut(s)	348, 380
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	423
BbvI	GCAGC	1 cut(s)	336
BccI	CCATC	1 cut(s)	486
BcoDI	GTCTC	3 cut(s)	63, 90, 613
BfaI	CTAG	2 cut(s)	653, 671
BisI	GCNGC	1 cut(s)	350
BlsI	GCNGC	1 cut(s)	351
BmiI	GGNNCC	3 cut(s)	53, 414, 580
BpiI	GAAGAC	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	603
Bsa29I	ATCGAT	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	613
Bsc4I	CCNNNNNNNGG	1 cut(s)	534
Bse1I	ACTGG	2 cut(s)	55, 215
BseCI	ATCGAT	1 cut(s)	174
BseGI	GGATG	2 cut(s)	184, 478
BseLI	CCNNNNNNNGG	1 cut(s)	534
BseMII	CTCAG	2 cut(s)	105, 543
BseNI	ACTGG	2 cut(s)	55, 215
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	336
Bsh1236I	CGCG	2 cut(s)	44, 137
BshNI	GGYRCC	1 cut(s)	51
BshVI	ATCGAT	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	534
BsmAI	GTCTC	3 cut(s)	63, 90, 613
BsmBI	CGTCTC	1 cut(s)	90
Bso31I	GGTCTC	1 cut(s)	613
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	7 cut(s)	62, 67, 236, 314, 418, 641, 646
BspACI	CCGC	2 cut(s)	49, 137
BspCNI	CTCAG	2 cut(s)	106, 542
BspDI	ATCGAT	1 cut(s)	174
BspFNI	CGCG	2 cut(s)	44, 137
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	3 cut(s)	53, 414, 580
BspPI	GGATC	5 cut(s)	57, 244, 322, 413, 649
BspT107I	GGYRCC	1 cut(s)	51
BspTNI	GGTCTC	1 cut(s)	613
BsrI	ACTGG	2 cut(s)	55, 215
BssMI	GATC	7 cut(s)	62, 67, 236, 314, 418, 641, 646
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	607
Bst6I	CTCTTC	1 cut(s)	516
BstDEI	CTNAG	3 cut(s)	114, 198, 529
BstENI	CCTNNNNNAGG	1 cut(s)	532
BstF5I	GGATG	2 cut(s)	184, 478
BstFNI	CGCG	2 cut(s)	44, 137
BstHHI	GCGC	2 cut(s)	137, 294
BstKTI	GATC	7 cut(s)	65, 70, 239, 317, 421, 644, 649
BstMAI	GTCTC	3 cut(s)	63, 90, 613
BstMBI	GATC	7 cut(s)	62, 67, 236, 314, 418, 641, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	464
BstSLI	GKGCMC	1 cut(s)	128
BstUI	CGCG	2 cut(s)	44, 137
BstV1I	GCAGC	1 cut(s)	336
BstV2I	GAAGAC	1 cut(s)	423
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
Bsu15I	ATCGAT	1 cut(s)	174
BsuTUI	ATCGAT	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	184, 478
CciI	TCATGA	1 cut(s)	501
CfoI	GCGC	2 cut(s)	137, 294
ClaI	ATCGAT	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	52
CspCI	CAANNNNNGTGG	2 cut(s)	213, 248
CviAII	CATG	4 cut(s)	15, 269, 461, 502
CviJI	RGCY	6 cut(s)	113, 160, 197, 349, 371, 652
CviKI_1	RGCY	6 cut(s)	113, 160, 197, 349, 371, 652
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	3 cut(s)	114, 198, 529
DpnI	GATC	7 cut(s)	64, 69, 238, 316, 420, 643, 648
DpnII	GATC	7 cut(s)	62, 67, 236, 314, 418, 641, 646
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
Eco31I	GGTCTC	1 cut(s)	613
EcoNI	CCTNNNNNAGG	1 cut(s)	532
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	4 cut(s)	18, 272, 464, 505
FatI	CATG	4 cut(s)	14, 268, 460, 501
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	350
FokI	GGATG	2 cut(s)	171, 465
Fsp4HI	GCNGC	1 cut(s)	350
FspBI	CTAG	2 cut(s)	653, 671
GlaI	GCGC	2 cut(s)	136, 293
GluI	GCNGC	1 cut(s)	350
HhaI	GCGC	2 cut(s)	137, 294
Hin1II	CATG	4 cut(s)	18, 272, 464, 505
Hin6I	GCGC	2 cut(s)	135, 292
HinP1I	GCGC	2 cut(s)	135, 292
HinfI	GANTC	4 cut(s)	5, 11, 524, 664
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	5 cut(s)	10, 67, 77, 532, 646
Hpy188III	TCNNGA	3 cut(s)	60, 502, 639
Hpy8I	GTNNAC	1 cut(s)	365
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	3 cut(s)	350, 383, 499
HpyCH4III	ACNGT	1 cut(s)	607
HpyCH4V	TGCA	3 cut(s)	224, 449, 682
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	3 cut(s)	114, 198, 529
Hsp92II	CATG	4 cut(s)	18, 272, 464, 505
HspAI	GCGC	2 cut(s)	135, 292
KpnI	GGTACC	1 cut(s)	55
Kzo9I	GATC	7 cut(s)	62, 67, 236, 314, 418, 641, 646
LmnI	GCTCC	2 cut(s)	18, 469
LpnPI	CCDG	6 cut(s)	68, 228, 295, 362, 429, 465
Lsp1109I	GCAGC	1 cut(s)	336
MaeI	CTAG	2 cut(s)	653, 671
MaeIII	GTNAC	2 cut(s)	167, 247
MalI	GATC	7 cut(s)	64, 69, 238, 316, 420, 643, 648
MboI	GATC	7 cut(s)	62, 67, 236, 314, 418, 641, 646
MboII	GAAGA	6 cut(s)	378, 393, 423, 533, 550, 553
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	1 cut(s)	128
MluCI	AATT	2 cut(s)	302, 319
MlyI	GAGTC	1 cut(s)	533
MseI	TTAA	3 cut(s)	281, 338, 584
MslI	CAYNNNNRTG	1 cut(s)	174
MvnI	CGCG	2 cut(s)	44, 137
MwoI	GCNNNNNNNGC	1 cut(s)	132
NdeII	GATC	7 cut(s)	62, 67, 236, 314, 418, 641, 646
NlaIII	CATG	4 cut(s)	18, 272, 464, 505
NlaIV	GGNNCC	3 cut(s)	53, 414, 580
NmuCI	GTSAC	2 cut(s)	167, 247
NspI	RCATGY	1 cut(s)	464
PagI	TCATGA	1 cut(s)	501
PciI	ACATGT	1 cut(s)	460
PfeI	GAWTC	2 cut(s)	11, 664
PkrI	GCNGC	1 cut(s)	351
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
PscI	ACATGT	1 cut(s)	460
PspN4I	GGNNCC	3 cut(s)	53, 414, 580
PsuI	RGATCY	1 cut(s)	314
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	3 cut(s)	281, 338, 584
SatI	GCNGC	1 cut(s)	350
Sau3AI	GATC	7 cut(s)	62, 67, 236, 314, 418, 641, 646
SchI	GAGTC	1 cut(s)	533
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	9 cut(s)	288, 351, 385, 418, 454, 499, 539, 638, 654
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	618
SmoI	CTYRAG	1 cut(s)	618
Sse9I	AATT	2 cut(s)	302, 319
SsiI	CCGC	2 cut(s)	49, 137
SspI	AATATT	1 cut(s)	336
SspMI	CTAG	2 cut(s)	653, 671
TaaI	ACNGT	1 cut(s)	607
TaqI	TCGA	7 cut(s)	38, 61, 147, 174, 192, 323, 489
TasI	AATT	2 cut(s)	302, 319
TfiI	GAWTC	2 cut(s)	11, 664
Tru1I	TTAA	3 cut(s)	281, 338, 584
Tru9I	TTAA	3 cut(s)	281, 338, 584
TseFI	GTSAC	2 cut(s)	167, 247
TseI	GCWGC	1 cut(s)	349
Tsp45I	GTSAC	2 cut(s)	167, 247
TspDTI	ATGAA	4 cut(s)	378, 471, 490, 518
TspGWI	ACGGA	1 cut(s)	425
XagI	CCTNNNNNAGG	1 cut(s)	532
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	1 cut(s)	464
XmiI	GTMKAC	1 cut(s)	364
XspI	CTAG	2 cut(s)	653, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.