Prupe.1G126700_v2.0.a1

protein DEHYDRATION-INDUCED 19 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0008255
Physical Location & Seq
Forward (+)
9964168 .. 9966905
2738 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G126700.1

Sequence Viewer

Length: 675 bp
ATGGAGTCTGATAATTCGTGGAGCAGTCTCTTCTCGAGCTCTTCGTCGAGGCGGTACCAATCTCGATCCGGTCACTTTTCCCAAACTACCCCAGATCTGTTTGCGCACGACGAAACTGATGGAGACGATGAGTTAAAGGCCGAGTTTTTGTGCCCTTTTTGCGCCGAGGATTTCGATGTTGTTGGGCTTTGTTGCCACATCGATGAGGAACATCCGGTGGAGGCTAAGAACGGGGTCTGTCCAGTTTGTTCCAAAAGGGTGGGAGCAAACCTTGTGAGCCATATTACCACGCAACATGGGAGTTTATTAAAGGTTCAGCGCAAGAGGAAATTTCGCAGGGGATCCAATTCAACATTTTCTTTATTAAGGAAAGAGCTTCGAGAAGGAAGTTTACAAGCCCTTCTCGGAGGTTCTTCTTTCCTTGTTTCTTCAAACACGGAAGCTGATCCTTTGCTGTCTTCCTTTATATATAACCCTCCCACAGTTGATGAGGATGTGAGCGCACAACCCCGTCCTTCAGTCGAAACTTCTTTTGTAAAGGAAAGCACGAAGGAAGAGTTCTCGGAAAGAACCGTGCAACAACCACCGTTATCACATAAGGACCAAGAAGAAAAGGGGCGGAAGTGTGAGTTTGTTCGAGGATTGCTGATGTCCACCATCCTTGATGACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Di19_C zf-Di19

Protein Analysis

225

Amino Acids

25.01

Weight (kDa)

5.31

Isoelectric Point (pI)

56.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 105
Acc65I GGTACC 1 cut(s) 54
AccB1I GGYRCC 1 cut(s) 54
AciI CCGC 2 cut(s) 52, 619
AclWI GGATC 4 cut(s) 60, 336, 349, 440
AcsI RAATTY 1 cut(s) 329
AcuI CTGAAG 1 cut(s) 501
AfaI GTAC 1 cut(s) 56
AgsI TTSAA 2 cut(s) 351, 432
AluBI AGCT 3 cut(s) 39, 376, 443
AluI AGCT 3 cut(s) 39, 376, 443
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 2 cut(s) 32, 117
AlwI GGATC 4 cut(s) 60, 336, 349, 440
Ama87I CYCGRG 1 cut(s) 34
AoxI GGCC 1 cut(s) 138
ApoI RAATTY 1 cut(s) 329
Asp718I GGTACC 1 cut(s) 54
AspLEI GCGC 4 cut(s) 106, 164, 321, 503
AspS9I GGNCC 1 cut(s) 601
AvaI CYCGRG 1 cut(s) 34
AvaII GGWCC 1 cut(s) 601
BaeGI GKGCMC 1 cut(s) 155
BamHI GGATCC 1 cut(s) 341
BanI GGYRCC 1 cut(s) 54
BanII GRGCYC 1 cut(s) 41
BarI GAAGNNNNNNTAC 2 cut(s) 375, 407
BbsI GAAGAC 1 cut(s) 450
Bbv12I GWGCWC 1 cut(s) 41
BccI CCATC 2 cut(s) 113, 665
BcoDI GTCTC 2 cut(s) 32, 117
BglII AGATCT 1 cut(s) 94
Bme18I GGWCC 1 cut(s) 601
BmeT110I CYCGRG 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 601
BmiI GGNNCC 2 cut(s) 56, 343
BpiI GAAGAC 1 cut(s) 450
Bsa29I ATCGAT 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 165
BsaWI WCCGGW 2 cut(s) 68, 214
Bse1I ACTGG 1 cut(s) 242
BseCI ATCGAT 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 3 cut(s) 211, 499, 657
BseNI ACTGG 1 cut(s) 242
BseSI GKGCMC 1 cut(s) 155
BshFI GGCC 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 54
BshVI ATCGAT 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 34
BsiSI CCGG 2 cut(s) 69, 215
BsmAI GTCTC 2 cut(s) 32, 117
BsmBI CGTCTC 1 cut(s) 117
BsnI GGCC 1 cut(s) 140
BsoBI CYCGRG 1 cut(s) 34
Bsp1286I GDGCHC 2 cut(s) 41, 155
Bsp143I GATC 4 cut(s) 65, 94, 341, 445
BspACI CCGC 2 cut(s) 52, 619
BspANI GGCC 1 cut(s) 140
BspDI ATCGAT 1 cut(s) 201
BspLI GGNNCC 2 cut(s) 56, 343
BspPI GGATC 4 cut(s) 60, 336, 349, 440
BspQI GCTCTTC 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 54
BsrI ACTGG 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 4 cut(s) 65, 94, 341, 445
Bst4CI ACNGT 3 cut(s) 484, 574, 588
Bst6I CTCTTC 3 cut(s) 35, 46, 549
BstDEI CTNAG 1 cut(s) 225
BstF5I GGATG 3 cut(s) 211, 499, 657
BstHHI GCGC 4 cut(s) 106, 164, 321, 503
BstKTI GATC 4 cut(s) 68, 97, 344, 448
BstMAI GTCTC 2 cut(s) 32, 117
BstMBI GATC 4 cut(s) 65, 94, 341, 445
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstSLI GKGCMC 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 450
BstX2I RGATCY 2 cut(s) 94, 341
BstXI CCANNNNNNTGG 1 cut(s) 259
BstYI RGATCY 2 cut(s) 94, 341
Bsu15I ATCGAT 1 cut(s) 201
BsuRI GGCC 1 cut(s) 140
BsuTUI ATCGAT 1 cut(s) 201
BtsCI GGATG 3 cut(s) 211, 499, 657
CfoI GCGC 4 cut(s) 106, 164, 321, 503
Cfr13I GGNCC 1 cut(s) 601
ClaI ATCGAT 1 cut(s) 201
Csp6I GTAC 1 cut(s) 55
CspCI CAANNNNNGTGG 1 cut(s) 643
CviAII CATG 1 cut(s) 296
CviJI RGCY 8 cut(s) 39, 140, 187, 224, 279, 376, 398, 443
CviKI_1 RGCY 8 cut(s) 39, 140, 187, 224, 279, 376, 398, 443
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 1 cut(s) 225
DpnI GATC 4 cut(s) 67, 96, 343, 447
DpnII GATC 4 cut(s) 65, 94, 341, 445
Eam1104I CTCTTC 3 cut(s) 35, 46, 549
EarI CTCTTC 3 cut(s) 35, 46, 549
EciI GGCGGA 1 cut(s) 634
Ecl136II GAGCTC 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 601
Eco53kI GAGCTC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 501
Eco88I CYCGRG 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 41
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 1 cut(s) 299
FaiI YATR 7 cut(s) 282, 297, 467, 469, 471, 597, 673
FatI CATG 1 cut(s) 295
FokI GGATG 3 cut(s) 198, 506, 644
FriOI GRGCYC 1 cut(s) 41
FspI TGCGCA 1 cut(s) 105
GlaI GCGC 4 cut(s) 105, 163, 320, 502
HaeIII GGCC 1 cut(s) 140
HapII CCGG 2 cut(s) 69, 215
HhaI GCGC 4 cut(s) 106, 164, 321, 503
Hin1II CATG 1 cut(s) 299
Hin6I GCGC 4 cut(s) 104, 162, 319, 501
HinP1I GCGC 4 cut(s) 104, 162, 319, 501
HinfI GANTC 1 cut(s) 5
HpaII CCGG 2 cut(s) 69, 215
Hpy166II GTNNAC 2 cut(s) 392, 654
Hpy188I TCNGA 3 cut(s) 10, 407, 565
Hpy188III TCNNGA 3 cut(s) 34, 63, 380
Hpy8I GTNNAC 2 cut(s) 392, 654
Hpy99I CGWCG 2 cut(s) 49, 113
HpyAV CCTTC 4 cut(s) 377, 410, 525, 544
HpyCH4III ACNGT 3 cut(s) 484, 574, 588
HpyCH4V TGCA 1 cut(s) 577
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 1 cut(s) 225
Hsp92II CATG 1 cut(s) 299
HspAI GCGC 4 cut(s) 104, 162, 319, 501
KpnI GGTACC 1 cut(s) 58
Kzo9I GATC 4 cut(s) 65, 94, 341, 445
LguI GCTCTTC 1 cut(s) 46
LmnI GCTCC 2 cut(s) 21, 263
LpnPI CCDG 5 cut(s) 82, 105, 228, 255, 322
MaeIII GTNAC 1 cut(s) 71
MalI GATC 4 cut(s) 67, 96, 343, 447
MboI GATC 4 cut(s) 65, 94, 341, 445
MboII GAAGA 7 cut(s) 22, 33, 405, 420, 450, 566, 620
MflI RGATCY 2 cut(s) 94, 341
MhlI GDGCHC 2 cut(s) 41, 155
MluCI AATT 3 cut(s) 13, 329, 346
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 9 cut(s) 42, 160, 199, 214, 318, 401, 484, 486, 632
MseI TTAA 3 cut(s) 134, 308, 365
MslI CAYNNNNRTG 1 cut(s) 201
MspI CCGG 2 cut(s) 69, 215
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeII GATC 4 cut(s) 65, 94, 341, 445
NlaIII CATG 1 cut(s) 299
NlaIV GGNNCC 2 cut(s) 56, 343
NmeAIII GCCGAG 2 cut(s) 166, 190
NmuCI GTSAC 1 cut(s) 71
NsbI TGCGCA 1 cut(s) 105
PaeR7I CTCGAG 1 cut(s) 34
PciSI GCTCTTC 1 cut(s) 46
PcsI WCGNNNNNNNCGW 1 cut(s) 41
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp124BI GAGCTC 1 cut(s) 41
PspN4I GGNNCC 2 cut(s) 56, 343
PspPI GGNCC 1 cut(s) 601
PsuI RGATCY 2 cut(s) 94, 341
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 201
SacI GAGCTC 1 cut(s) 41
SapI GCTCTTC 1 cut(s) 46
SaqAI TTAA 3 cut(s) 134, 308, 365
Sau3AI GATC 4 cut(s) 65, 94, 341, 445
Sau96I GGNCC 1 cut(s) 601
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 2 cut(s) 41, 155
SetI ASST 6 cut(s) 41, 273, 315, 378, 412, 445
Sfr274I CTCGAG 1 cut(s) 34
SinI GGWCC 1 cut(s) 601
SlaI CTCGAG 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 3 cut(s) 13, 329, 346
SsiI CCGC 2 cut(s) 52, 619
SstI GAGCTC 1 cut(s) 41
TaaI ACNGT 3 cut(s) 484, 574, 588
TaqI TCGA 8 cut(s) 35, 47, 64, 174, 201, 379, 522, 637
TasI AATT 3 cut(s) 13, 329, 346
Tru1I TTAA 3 cut(s) 134, 308, 365
Tru9I TTAA 3 cut(s) 134, 308, 365
TseFI GTSAC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 71
TspGWI ACGGA 1 cut(s) 452
VpaK11BI GGWCC 1 cut(s) 601
XapI RAATTY 1 cut(s) 329
XhoI CTCGAG 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.