Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002260.1

Orthogroup ID

OG0008255

Physical Location & Seq

Genomic Coordinates Forward (+)

193833 .. 195853

Gene Structure 2021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002260.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atggactctgattcgtggagcaatctgttctcgtcctcgaacgcgaggcggtaccagtctcgatccgatctgttcggacacgaggaaatagagggagacgatgagataaaggctgagtttttgtgccccttctgcgcggaggatttcgatgttgttgggctttgttgtcacatcgatgaggaacatcccgtcgaggctaagaatggggtctgtccagtttgcgcaaagagggtgggatcaaatcttgtcacccatattaccacacaacatgggagtttgaaagagctgcgagaaggaagtctacaagcccttctgggaggttcttcattcccattttcttcaaatacggaacctgatcctttgttgtcttcttttatatacaatgcacctgatgaacatgtgagggaacaaccccatcctttagtcgaagcacctttcatgaaggaaagcacaaaagaagagtcctcagaaagaattgctcaacaaccgcctctatcaaccaaagaccaagaggagaaggctcggaagtgtgagtttgttcaaggattgctgatgtccaccattcttgatgatttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

192

Amino Acids

21.42

Weight (kDa)

4.64

Isoelectric Point (pI)

67.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06760 AT3G06760 AT5G49230 AT5G49230
fragaria_vesca	FvH4_4g19190
malus_domestica	MD13G1160200.v1.1 MD16G1159500.v1.1
prunus_persica	Prupe.1G126600_v2.0.a1 Prupe.1G126600_v2.0.a1 Prupe.1G126700_v2.0.a1
pyrus_communis	pycom13g13630
rosa_chinensis	RchiOBHm_Chr4g0424161 RchiOBHm_Chr4g0424171
rosa_laevigata	RLG00000007500
rosa_multiflora	Rmu_sc0002260.1_g000044 Rmu_sc0038176.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366140
rosa_rugosa	Rorug04G0193500
rosa_samantha	Rh4AG251400 Rh4BG256500 Rh4CG267400 Rh4DG251100
rosa_wichuraiana	Rw4G021680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	223
Acc65I	GGTACC	1 cut(s)	51
AccB1I	GGYRCC	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	301
AccII	CGCG	2 cut(s)	44, 137
AciI	CCGC	3 cut(s)	49, 137, 488
AclWI	GGATC	3 cut(s)	57, 244, 350
AfaI	GTAC	1 cut(s)	53
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	3 cut(s)	280, 342, 542
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw26I	GTCTC	2 cut(s)	63, 90
AlwI	GGATC	3 cut(s)	57, 244, 350
ApeKI	GCWGC	1 cut(s)	286
ArsI	GACNNNNNNTTYG	2 cut(s)	446, 478
Asp718I	GGTACC	1 cut(s)	51
AspLEI	GCGC	2 cut(s)	137, 224
AsuHPI	GGTGA	1 cut(s)	241
BaeGI	GKGCMC	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	51
BarI	GAAGNNNNNNTAC	2 cut(s)	285, 317
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	1 cut(s)	423
BcoDI	GTCTC	2 cut(s)	63, 90
BisI	GCNGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	288
BmiI	GGNNCC	2 cut(s)	53, 351
BpiI	GAAGAC	1 cut(s)	360
Bsa29I	ATCGAT	1 cut(s)	174
Bse1I	ACTGG	2 cut(s)	55, 215
BseCI	ATCGAT	1 cut(s)	174
BseGI	GGATG	2 cut(s)	184, 415
BseMII	CTCAG	2 cut(s)	105, 480
BseNI	ACTGG	2 cut(s)	55, 215
BseRI	GAGGAG	1 cut(s)	527
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	273
Bsh1236I	CGCG	2 cut(s)	44, 137
BshNI	GGYRCC	1 cut(s)	51
BshVI	ATCGAT	1 cut(s)	174
BsmAI	GTCTC	2 cut(s)	63, 90
BsmBI	CGTCTC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	4 cut(s)	62, 67, 236, 355
BspACI	CCGC	3 cut(s)	49, 137, 488
BspCNI	CTCAG	2 cut(s)	106, 479
BspDI	ATCGAT	1 cut(s)	174
BspFNI	CGCG	2 cut(s)	44, 137
BspHI	TCATGA	1 cut(s)	438
BspLI	GGNNCC	2 cut(s)	53, 351
BspPI	GGATC	3 cut(s)	57, 244, 350
BspT107I	GGYRCC	1 cut(s)	51
BsrI	ACTGG	2 cut(s)	55, 215
BssMI	GATC	4 cut(s)	62, 67, 236, 355
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	453
BstDEI	CTNAG	3 cut(s)	114, 198, 466
BstF5I	GGATG	2 cut(s)	184, 415
BstFNI	CGCG	2 cut(s)	44, 137
BstHHI	GCGC	2 cut(s)	137, 224
BstKTI	GATC	4 cut(s)	65, 70, 239, 358
BstMAI	GTCTC	2 cut(s)	63, 90
BstMBI	GATC	4 cut(s)	62, 67, 236, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	401
BstSLI	GKGCMC	1 cut(s)	128
BstUI	CGCG	2 cut(s)	44, 137
BstV1I	GCAGC	1 cut(s)	273
BstV2I	GAAGAC	1 cut(s)	360
Bsu15I	ATCGAT	1 cut(s)	174
BsuTUI	ATCGAT	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	184, 415
CciI	TCATGA	1 cut(s)	438
CfoI	GCGC	2 cut(s)	137, 224
ClaI	ATCGAT	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	52
CspCI	CAANNNNNGTGG	3 cut(s)	213, 248, 547
CviAII	CATG	3 cut(s)	269, 398, 439
CviJI	RGCY	6 cut(s)	113, 160, 197, 286, 308, 521
CviKI_1	RGCY	6 cut(s)	113, 160, 197, 286, 308, 521
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	3 cut(s)	114, 198, 466
DpnI	GATC	4 cut(s)	64, 69, 238, 357
DpnII	GATC	4 cut(s)	62, 67, 236, 355
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	3 cut(s)	272, 401, 442
FaiI	YATR	7 cut(s)	255, 270, 377, 379, 399, 440, 577
FatI	CATG	3 cut(s)	268, 397, 438
FblI	GTMKAC	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	287
FokI	GGATG	2 cut(s)	171, 402
Fsp4HI	GCNGC	1 cut(s)	287
FspI	TGCGCA	1 cut(s)	223
GlaI	GCGC	2 cut(s)	136, 223
GluI	GCNGC	1 cut(s)	287
HhaI	GCGC	2 cut(s)	137, 224
Hin1II	CATG	3 cut(s)	272, 401, 442
Hin6I	GCGC	2 cut(s)	135, 222
HinP1I	GCGC	2 cut(s)	135, 222
HinfI	GANTC	3 cut(s)	5, 11, 461
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	2 cut(s)	302, 558
Hpy188I	TCNGA	5 cut(s)	10, 67, 77, 469, 525
Hpy188III	TCNNGA	3 cut(s)	60, 439, 566
Hpy8I	GTNNAC	2 cut(s)	302, 558
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	5 cut(s)	139, 287, 320, 436, 511
HpyCH4V	TGCA	1 cut(s)	386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	3 cut(s)	114, 198, 466
Hsp92II	CATG	3 cut(s)	272, 401, 442
HspAI	GCGC	2 cut(s)	135, 222
KpnI	GGTACC	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	62, 67, 236, 355
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	5 cut(s)	68, 228, 299, 366, 402
Lsp1109I	GCAGC	1 cut(s)	273
MaeIII	GTNAC	2 cut(s)	167, 247
MalI	GATC	4 cut(s)	64, 69, 238, 357
MboI	GATC	4 cut(s)	62, 67, 236, 355
MboII	GAAGA	4 cut(s)	315, 330, 360, 470
MhlI	GDGCHC	1 cut(s)	128
MluCI	AATT	1 cut(s)	474
MlyI	GAGTC	1 cut(s)	470
MslI	CAYNNNNRTG	1 cut(s)	174
MvnI	CGCG	2 cut(s)	44, 137
MwoI	GCNNNNNNNGC	1 cut(s)	132
NdeII	GATC	4 cut(s)	62, 67, 236, 355
NlaIII	CATG	3 cut(s)	272, 401, 442
NlaIV	GGNNCC	2 cut(s)	53, 351
NmuCI	GTSAC	2 cut(s)	167, 247
NsbI	TGCGCA	1 cut(s)	223
NspI	RCATGY	1 cut(s)	401
PagI	TCATGA	1 cut(s)	438
PciI	ACATGT	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	288
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
PscI	ACATGT	1 cut(s)	397
PspN4I	GGNNCC	2 cut(s)	53, 351
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	174
SatI	GCNGC	1 cut(s)	287
Sau3AI	GATC	4 cut(s)	62, 67, 236, 355
SchI	GAGTC	1 cut(s)	470
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	5 cut(s)	288, 322, 355, 391, 436
SmiMI	CAYNNNNRTG	1 cut(s)	174
Sse9I	AATT	1 cut(s)	474
SsiI	CCGC	3 cut(s)	49, 137, 488
TaqI	TCGA	6 cut(s)	38, 61, 147, 174, 192, 426
TasI	AATT	1 cut(s)	474
TfiI	GAWTC	1 cut(s)	11
TseFI	GTSAC	2 cut(s)	167, 247
TseI	GCWGC	1 cut(s)	286
Tsp45I	GTSAC	2 cut(s)	167, 247
TspDTI	ATGAA	4 cut(s)	315, 408, 427, 455
TspGWI	ACGGA	1 cut(s)	362
XceI	RCATGY	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.