Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008255

Physical Location & Seq

Genomic Coordinates Reverse (-)

19958872 .. 19960681

Gene Structure 1810 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G49230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGATTCGAATTCATGGATCAATTGTCCCCCTGTGTTTTCATCATCGCCTTCTTCACGCCGTTACCAATCTCGATCAGATTTGTATTTGGGAGATGTTGAAGGAGAAGACGATTTGAAAGCTGAGTTTATGTGTCCTTTTTGTGCAGATGAGTTTGATATTGTTGGTCTTTGTTGTCATATTGATGTGAATCATCCTGTTGAAGCTAAGAATGGGGTTTGTCCTGTCTGCACAAAGAAGGTGGGATTGGACATTGTTGGCCATATAACAACGCAACACGGGAACGTATTTAAGGTGCAGCGAAGAAGAAGGTTGCGTAAAGGTGGATATAGCTCTACCTATCTTACTCTTAAAAAAGAGCTTCGAGAAGCTAACTTACAGTCTCTTGGAGGGTCTTCCACTTTCATTCCCTCTTCCAATATAGATTCTGATCCTCTACTCTCATCCTTTATGTTTAAACCCCCTTCGGCTATACCTATCACTGAAGGAGACTCGGTAGCACAAGTCTCACCTAAGGACACCTCTAAAAGCAAAATACAACAAGAATCATTCTCAAACGAAGATCAAGAGAAGGCAAAGAAGAGCAAGTTTGTGCGGGGCTTGCTTTGGTCAACCATGCTTGAAGACAAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009785 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0023052 GO:0030522 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071489 GO:0071491 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

211

Amino Acids

23.49

Weight (kDa)

6.89

Isoelectric Point (pI)

64.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	42 - 94	4.8e-23	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	116 - 206	5.2e-21	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06760 AT3G06760 AT5G49230 AT5G49230
fragaria_vesca	FvH4_4g19190
malus_domestica	MD13G1160200.v1.1 MD16G1159500.v1.1
prunus_persica	Prupe.1G126600_v2.0.a1 Prupe.1G126600_v2.0.a1 Prupe.1G126700_v2.0.a1
pyrus_communis	pycom13g13630
rosa_chinensis	RchiOBHm_Chr4g0424161 RchiOBHm_Chr4g0424171
rosa_laevigata	RLG00000007500
rosa_multiflora	Rmu_sc0002260.1_g000044 Rmu_sc0038176.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366140
rosa_rugosa	Rorug04G0193500
rosa_samantha	Rh4AG251400 Rh4BG256500 Rh4CG267400 Rh4DG251100
rosa_wichuraiana	Rw4G021680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	595
AclWI	GGATC	2 cut(s)	26, 425
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	504
AgsI	TTSAA	4 cut(s)	101, 118, 203, 623
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AluBI	AGCT	5 cut(s)	122, 206, 333, 361, 371
AluI	AGCT	5 cut(s)	122, 206, 333, 361, 371
Alw26I	GTCTC	3 cut(s)	387, 483, 511
AlwI	GGATC	2 cut(s)	26, 425
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	1 cut(s)	298
ApoI	RAATTY	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	501
AsuII	TTCGAA	1 cut(s)	8
AxyI	CCTNAGG	1 cut(s)	513
BalI	TGGCCA	1 cut(s)	261
BarI	GAAGNNNNNNTAC	2 cut(s)	360, 392
BbsI	GAAGAC	3 cut(s)	114, 387, 630
BbvI	GCAGC	1 cut(s)	310
BceAI	ACGGC	1 cut(s)	45
BcoDI	GTCTC	3 cut(s)	387, 483, 511
BisI	GCNGC	1 cut(s)	299
BlsI	GCNGC	1 cut(s)	300
BpiI	GAAGAC	3 cut(s)	114, 387, 630
Bpu14I	TTCGAA	1 cut(s)	8
BsaBI	GATNNNNATC	2 cut(s)	189, 429
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bse21I	CCTNAGG	1 cut(s)	513
Bse8I	GATNNNNATC	2 cut(s)	189, 429
BseGI	GGATG	2 cut(s)	193, 443
BseJI	GATNNNNATC	2 cut(s)	189, 429
BseMII	CTCAG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	310
BsgI	GTGCAG	3 cut(s)	165, 214, 317
BshFI	GGCC	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	12
BsmAI	GTCTC	3 cut(s)	387, 483, 511
BsmFI	GGGAC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	261
Bsp119I	TTCGAA	1 cut(s)	8
Bsp143I	GATC	4 cut(s)	18, 74, 430, 562
BspACI	CCGC	1 cut(s)	595
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	1 cut(s)	115
BspPI	GGATC	2 cut(s)	26, 425
BspQI	GCTCTTC	1 cut(s)	575
BspT104I	TTCGAA	1 cut(s)	8
BssMI	GATC	4 cut(s)	18, 74, 430, 562
Bst4CI	ACNGT	1 cut(s)	381
Bst6I	CTCTTC	2 cut(s)	418, 575
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	602
BstDEI	CTNAG	3 cut(s)	123, 207, 513
BstF5I	GGATG	2 cut(s)	193, 443
BstKTI	GATC	4 cut(s)	21, 77, 433, 565
BstMAI	GTCTC	3 cut(s)	387, 483, 511
BstMBI	GATC	4 cut(s)	18, 74, 430, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	601
BstV1I	GCAGC	1 cut(s)	310
BstV2I	GAAGAC	3 cut(s)	114, 387, 630
Bsu36I	CCTNAGG	1 cut(s)	513
BsuRI	GGCC	1 cut(s)	261
BtgZI	GCGATG	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	193, 443
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	1 cut(s)	602
CspCI	CAANNNNNGTGG	2 cut(s)	222, 257
CviAII	CATG	2 cut(s)	15, 616
CviJI	RGCY	8 cut(s)	122, 206, 261, 333, 361, 371, 470, 600
CviKI_1	RGCY	8 cut(s)	122, 206, 261, 333, 361, 371, 470, 600
DdeI	CTNAG	3 cut(s)	123, 207, 513
DpnI	GATC	4 cut(s)	20, 76, 432, 564
DpnII	GATC	4 cut(s)	18, 74, 430, 562
DraI	TTTAAA	1 cut(s)	457
EaeI	YGGCCR	1 cut(s)	259
Eam1104I	CTCTTC	2 cut(s)	418, 575
EarI	CTCTTC	2 cut(s)	418, 575
Eco57I	CTGAAG	1 cut(s)	504
Eco81I	CCTNAGG	1 cut(s)	513
EcoRI	GAATTC	1 cut(s)	10
FaeI	CATG	2 cut(s)	18, 619
FaqI	GGGAC	1 cut(s)	12
FatI	CATG	2 cut(s)	14, 615
FauI	CCCGC	1 cut(s)	588
Fnu4HI	GCNGC	1 cut(s)	299
FokI	GGATG	2 cut(s)	180, 430
Fsp4HI	GCNGC	1 cut(s)	299
GluI	GCNGC	1 cut(s)	299
HaeIII	GGCC	1 cut(s)	261
Hin1II	CATG	2 cut(s)	18, 619
HincII	GTYRAC	1 cut(s)	612
HindII	GTYRAC	1 cut(s)	612
HinfI	GANTC	5 cut(s)	5, 190, 425, 491, 545
HphI	GGTGA	1 cut(s)	501
Hpy166II	GTNNAC	1 cut(s)	612
Hpy188I	TCNGA	2 cut(s)	79, 430
Hpy188III	TCNNGA	3 cut(s)	72, 365, 566
Hpy8I	GTNNAC	1 cut(s)	612
HpyAV	CCTTC	7 cut(s)	60, 95, 232, 303, 474, 479, 565
HpyCH4III	ACNGT	1 cut(s)	381
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	3 cut(s)	146, 231, 298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	601
HpyF3I	CTNAG	3 cut(s)	123, 207, 513
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	18, 619
Kzo9I	GATC	4 cut(s)	18, 74, 430, 562
LguI	GCTCTTC	1 cut(s)	575
LpnPI	CCDG	3 cut(s)	45, 210, 237
Lsp1109I	GCAGC	1 cut(s)	310
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	4 cut(s)	20, 76, 432, 564
MboI	GATC	4 cut(s)	18, 74, 430, 562
MboII	GAAGA	9 cut(s)	45, 119, 315, 318, 387, 405, 572, 592, 635
MfeI	CAATTG	1 cut(s)	22
MlsI	TGGCCA	1 cut(s)	261
MluCI	AATT	2 cut(s)	10, 22
MluNI	TGGCCA	1 cut(s)	261
MlyI	GAGTC	1 cut(s)	485
MnlI	CCTC	4 cut(s)	383, 421, 444, 532
Mox20I	TGGCCA	1 cut(s)	261
MscI	TGGCCA	1 cut(s)	261
MseI	TTAA	3 cut(s)	291, 351, 456
MslI	CAYNNNNRTG	1 cut(s)	183
Msp20I	TGGCCA	1 cut(s)	261
MssI	GTTTAAAC	1 cut(s)	457
MunI	CAATTG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	601
NdeII	GATC	4 cut(s)	18, 74, 430, 562
NlaIII	CATG	2 cut(s)	18, 619
NspV	TTCGAA	1 cut(s)	8
PciSI	GCTCTTC	1 cut(s)	575
PfeI	GAWTC	4 cut(s)	5, 190, 425, 545
PkrI	GCNGC	1 cut(s)	300
PleI	GAGTC	1 cut(s)	485
PmeI	GTTTAAAC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	485
RseI	CAYNNNNRTG	1 cut(s)	183
SapI	GCTCTTC	1 cut(s)	575
SaqAI	TTAA	3 cut(s)	291, 351, 456
SatI	GCNGC	1 cut(s)	299
Sau3AI	GATC	4 cut(s)	18, 74, 430, 562
SchI	GAGTC	1 cut(s)	485
SfuI	TTCGAA	1 cut(s)	8
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	2 cut(s)	10, 22
SsiI	CCGC	1 cut(s)	595
TaaI	ACNGT	1 cut(s)	381
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	3 cut(s)	8, 73, 364
TasI	AATT	2 cut(s)	10, 22
TfiI	GAWTC	4 cut(s)	5, 190, 425, 545
Tru1I	TTAA	3 cut(s)	291, 351, 456
Tru9I	TTAA	3 cut(s)	291, 351, 456
TscAI	CASTG	1 cut(s)	487
TseI	GCWGC	1 cut(s)	298
TspDTI	ATGAA	2 cut(s)	30, 394
TspRI	CASTG	1 cut(s)	487
XapI	RAATTY	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.