Rh4AG251400

protein DEHYDRATION-INDUCED 19 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0008255
Physical Location & Seq
Reverse (-)
56464233 .. 56466874
2642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG251400.1

Sequence Viewer

Length: 405 bp
ATGTATTCCTTGACTATACATTACGTTCAGCGCAAAAGGAAATTTCGCAGGGGATCTAATTCGACATTTTCAATATTAAGGAAAGAGCTGCGAGAAGGAAGTCTACAAGCCCTTCTGGGAGGTTCTTCATTCCCATTTTCTTCAAATACGGAACCTGATCCTTTGTTGTCTTCTTTTATATACAATGCACCTGATGAACATGTGAGTGAACAACCCCATCCTTTAGTCGAAGCACCTTTCATGAAGGAAAGCACAAAAGAAGAGTCCTCAGAAAGGTATGAGCATTACAACGACTTCTTCTTCTTGTTATTATTATTTTTTTTTTTGTTCCTTAACTCCCCAAATGAAAATGACAATTCTCCATATCTCGAGGCATTGGTTTTAGGTCGGGATCAGATCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Di19_C zf-Di19

Protein Analysis

134

Amino Acids

15.59

Weight (kDa)

5.34

Isoelectric Point (pI)

62.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Di19_C PF14571 23 - 93 8.8e-18 Stress-induced protein Di19, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 103
AclWI GGATC 3 cut(s) 61, 152, 399
AcsI RAATTY 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 273
AflIII ACRYGT 1 cut(s) 199
AgsI TTSAA 2 cut(s) 72, 144
AluBI AGCT 2 cut(s) 88, 402
AluI AGCT 2 cut(s) 88, 402
AlwI GGATC 3 cut(s) 61, 152, 399
Ama87I CYCGRG 1 cut(s) 368
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 1 cut(s) 41
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AspLEI GCGC 1 cut(s) 33
AvaI CYCGRG 1 cut(s) 368
BarI GAAGNNNNNNTAC 2 cut(s) 87, 119
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 75
BccI CCATC 1 cut(s) 225
BfaI CTAG 1 cut(s) 403
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
BmeT110I CYCGRG 1 cut(s) 368
BmiI GGNNCC 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 273
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 273
BseMII CTCAG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 273
BsoBI CYCGRG 1 cut(s) 368
Bsp143I GATC 4 cut(s) 53, 157, 391, 396
BspCNI CTCAG 1 cut(s) 281
BspHI TCATGA 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 153
BspPI GGATC 3 cut(s) 61, 152, 399
BssMI GATC 4 cut(s) 53, 157, 391, 396
Bst6I CTCTTC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 268
BstENI CCTNNNNNAGG 1 cut(s) 271
BstF5I GGATG 1 cut(s) 217
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 4 cut(s) 56, 160, 394, 399
BstMBI GATC 4 cut(s) 53, 157, 391, 396
BstNSI RCATGY 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 75
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
BtsCI GGATG 1 cut(s) 217
CciI TCATGA 1 cut(s) 240
CfoI GCGC 1 cut(s) 33
CviAII CATG 2 cut(s) 200, 241
CviJI RGCY 3 cut(s) 88, 110, 402
CviKI_1 RGCY 3 cut(s) 88, 110, 402
DdeI CTNAG 1 cut(s) 268
DpnI GATC 4 cut(s) 55, 159, 393, 398
DpnII GATC 4 cut(s) 53, 157, 391, 396
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 368
EcoNI CCTNNNNNAGG 1 cut(s) 271
FaeI CATG 2 cut(s) 203, 244
FaiI YATR 7 cut(s) 17, 179, 181, 201, 242, 279, 364
FatI CATG 2 cut(s) 199, 240
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 1 cut(s) 403
GlaI GCGC 1 cut(s) 32
GluI GCNGC 1 cut(s) 89
HhaI GCGC 1 cut(s) 33
Hin1II CATG 2 cut(s) 203, 244
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 1 cut(s) 263
Hpy166II GTNNAC 2 cut(s) 104, 209
Hpy188I TCNGA 2 cut(s) 271, 396
Hpy188III TCNNGA 3 cut(s) 241, 368, 389
Hpy8I GTNNAC 2 cut(s) 104, 209
HpyAV CCTTC 3 cut(s) 89, 122, 238
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 268
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 2 cut(s) 203, 244
HspAI GCGC 1 cut(s) 31
Kzo9I GATC 4 cut(s) 53, 157, 391, 396
LpnPI CCDG 4 cut(s) 34, 101, 168, 204
Lsp1109I GCAGC 1 cut(s) 75
MaeI CTAG 1 cut(s) 403
MaeII ACGT 1 cut(s) 24
MalI GATC 4 cut(s) 55, 159, 393, 398
MboI GATC 4 cut(s) 53, 157, 391, 396
MboII GAAGA 6 cut(s) 117, 132, 162, 272, 289, 292
MflI RGATCY 1 cut(s) 53
MluCI AATT 3 cut(s) 41, 58, 355
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 3 cut(s) 113, 277, 364
MseI TTAA 2 cut(s) 77, 333
MslI CAYNNNNRTG 1 cut(s) 204
NdeII GATC 4 cut(s) 53, 157, 391, 396
NlaIII CATG 2 cut(s) 203, 244
NlaIV GGNNCC 1 cut(s) 153
NspI RCATGY 1 cut(s) 203
PaeR7I CTCGAG 1 cut(s) 368
PagI TCATGA 1 cut(s) 240
PciI ACATGT 1 cut(s) 199
PkrI GCNGC 1 cut(s) 90
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PscI ACATGT 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 153
PsuI RGATCY 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 2 cut(s) 77, 333
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 4 cut(s) 53, 157, 391, 396
SchI GAGTC 1 cut(s) 272
SetI ASST 9 cut(s) 27, 90, 124, 157, 193, 238, 278, 388, 404
Sfr274I CTCGAG 1 cut(s) 368
SlaI CTCGAG 1 cut(s) 368
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 3 cut(s) 41, 58, 355
SspI AATATT 1 cut(s) 75
SspMI CTAG 1 cut(s) 403
TaiI ACGT 1 cut(s) 27
TaqI TCGA 3 cut(s) 62, 228, 369
TasI AATT 3 cut(s) 41, 58, 355
Tru1I TTAA 2 cut(s) 77, 333
Tru9I TTAA 2 cut(s) 77, 333
TseI GCWGC 1 cut(s) 88
TspDTI ATGAA 5 cut(s) 117, 210, 229, 257, 360
TspGWI ACGGA 1 cut(s) 164
XagI CCTNNNNNAGG 1 cut(s) 271
XapI RAATTY 1 cut(s) 41
XceI RCATGY 1 cut(s) 203
XhoI CTCGAG 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 103
XspI CTAG 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.